系统发生分析发现牛病毒性腹泻病病毒新基因亚型

本研究对我国首次分离获得的牛源牛病毒性腹泻病毒(BVDV)毒株Changchun 184(CC-184)和猪源牛病毒性腹泻病毒ZM-95进行了遗传衍化关系研究.选择主要抗原E2基因为研究对象,首先应用RT-PCR及套式PCR克隆得到CC-184和ZM-95的E2片段,通过序列测定发现CC-184和ZM-95 E2基因长度分别为1,122bp和1,125bp,各自编码374和375个氨基酸残基.核酸序列同源性比较和系统发生分析表明2株病毒均属于BVDV-1,CC-184与Osloss亲缘关系最近,都属于已有的b基因亚型,其E2基因同源性达91.8%.而ZM-95的E2基因有一个特征性的变异区,包含一个密码子序列插入,这一变异区编码了一段有别于其他瘟病毒的五肽氨基酸序列HYKKK.结果还表明ZM-95与BVDV-1现有的5个基因亚型的亲缘关系均较远,E2基因同源性最高(与Oregonc24v)只有72.4%.而BVDV 1亚型内毒株间的同源性大于85%,亚型间的同源性在69%～75%之间,充分说明ZM-95是BVDV-1中一个新发现的基因亚型.通常认为猪源BVDV来源于牛,应该与牛源BVDV有十分近的遗传关系,但是本研究发现ZM-95与其他已知牛源BVDV较低的基因同源性说明猪源BVDV还具有独立的遗传衍化与传播来源的可能性.     

Identification and categorization of horizontally transferred genes in prokaryotic genomes

Horizontal gene transfer （HGT）, a process through which genomes acquire genetic materials from distantly related organisms, is believed to be one of the major forces in prokaryotic genome evolution.However, systematic investigation is still scarce to clarify two basic issues about HGT： （1） what types of genes are transferred; and （2） what influence HGT events over the organization and evolution of biological pathways. Genome-scale investigations of these two issues will advance the systematical understanding of HGT in the context of prokaryotic genome evolution. Having investigated 82 genomes, we constructed an HGT database across broad evolutionary timescales. We identified four function categories containing a high proportion of horizontally transferred genes： cell envelope, energy metabolism, regulatory functions, and transport/binding proteins. Such biased function distribution indicates that HGT is not completely random;instead, it is under high selective pressure, required by function restraints in organisms. Furthermore, we mapped the transferred genes onto the connectivity structure map of organism-specific pathways listed in Kyoto Encyclopedia of Genes and Genomes （KEGG）. Our results suggest that recruitment of transferred genes into pathways is also selectively constrained because of the tuned interaction between original pathway members. Pathway organization structures still conserve well through evolution even with the recruitment of horizontally transferred genes. Interestingly, in pathways whose organization were significantly affected by HGT events, the operon-like arrangement of transferred genes was found to be prevalent. Such results suggest that operon plays an essential and directional role in the integration of alien genes into pathways.     

化感水稻种质资源鉴定及基因定位研究进展与展望

稻种资源化感作用的鉴定评价与深入研究是化感水稻品种选育的基础.本文概要介绍了化感水稻种质资源鉴定评价方法、化感作用生理生化机理以及化感特性遗传与基因定位方面的主要研究进展,并进一步讨论了水稻化感作用研究与利用的发展方向.     

Identification of a positive Cis-element upstream of human NKX3.1 gene

NKX3.1 is a prostate-specific homeobox gene related to prostate development and prostate cancer. In this work, we aimed to identify precisely the functional cis-element in the 197 bp region （from -1032 to -836 bp） of the NKX3.1 promoter （from -1032 to ＋8 bp）, which was previously identified to present positive regulatory activity on NKX3.1 expression, by deletion mutagenesis analysis and electrophoretic mobility shift assay （EMSA）. A 16 bp positive cis-element located between -920 and -905 bp upstream of the NKX3.1 gene was identified by deletion mutation analysis and proved to be a functional positive cis-element by EMSA. It will be important to further study the functions and regulatory mechanisms of this positive cis-element in NKX3.1 gene expression.     

大肠杆菌O23 O-抗原基因簇序列的破译及UDP-N-乙酰葡萄糖-C4异构酶的鉴定

采用鸟枪法破译大肠杆菌O23标准株的O-抗原基因簇序列,并用生物信息学的方法进行了基因注释和分析;采用基因缺失和互补的方法鉴定了O23的UDP-GlcNAc C4异构酶(Gne);用同源建模的方法构建了O23 Gne的高级结构并对其活性位点进行了分析;分析了不同血清型大肠杆菌O-抗原基因簇中gne基因的多样性;根据O23O-抗原基因簇中的特异基因筛选出了可用于大肠杆菌O23快速检测的特异DNA序列。     

Sinorhizobium morelens S-5中N-氨甲酰基水解酶基因的克隆、表达和纯化

N-氨甲酰基水解酶是一种非常具有工业应用价值的水解酶,可用于制备光学纯氨基酸。通过LA PCR从Sinorhizobium morelensS-5菌中克隆到1.3kb的DNA片段,测序表明该片段上含有一个完整的N-氨甲酰基水解酶的基因(hyuC)序列。将hyuC基因克隆到表达载体pET30a上,重组质粒pET30a-HyuC在大肠杆菌中获得了高水平表达。重组的N-氨甲酰基水解酶经过热处理和三步柱色谱分离而纯化。纯化倍数为16.1倍,收率21.2%。该酶为同源四聚体,亚基分子量是38kDa。最适温度是60℃,最适pH为7.0。该酶有较高的热稳定性和氧化稳定性。Fe2 和Ca2 对酶的活性有一定的促进作用,而金属螯合剂和巯基试剂对酶活无明显影响。     

中国部分地方鸡种MHC B-G基因第二外显子的遗传多态性

根据鸡主要组织相容性复合体BG基因序列设计特异性引物,在9个中国地方鸡种和1个国外引进鸡种基因组中扩增了包括其第一内含子和第二外显子在内、长度为401bp的DNA片段。经PCRSSCP分型筛选后,对该片段的核苷酸序列进行克隆测序和直接PCR测序及比对分析,发现了31个MHCBG新等位基因;各等位基因主型所含有的亚型数及其在不同品种间的分布极不均衡。第二外显子核苷酸序列和其所编码的MHCBG抗原类IgV结构域氨基酸序列比较表明,在中国地方鸡种BG基因第二外显子的207bp序列中有37个多态性变异位点,其中简约性信息位点29个,单个位点的变异8个;等位基因间的遗传变异范围0.0013-0.1433;各变异位点的核苷酸变异指数0.206-1.462。该编码区核苷酸的异义替换率为9.26%±1.92%,高于同义替换率2.34%±0.90%。所估计的核苷酸转换数和颠换数随着遗传距离的增加而逐渐增加,当核苷酸转换数和颠换数达到平衡后,该片段核苷酸转换数的增加幅度逐渐高于颠换数。在其所编码的类IgV结构域氨基酸序列中,多态变异位点有22个,其中简约性信息位点6个,单变异位点16个;所估测的等电点为8.45,疏水性氨基酸占40.3%,亲水性氨基酸占29.9%;该序列具有明显的疏水性特点。等位基因间的系统发生分析表明,31个BG等位基因分为两个群,相同主型的等位基因首先聚类。本研究为鸡BG基因的免疫功能和遗传进化研究提供了分子依据     

牛SRY蛋白表达纯化与体外功能鉴定

利用PCR技术从北京黑白花奶牛(Bostaurus)的基因组DNA中克隆了SRY(Sex-determiningregionontheYchromosome)基因编码区全长序列。序列分析表明牛SRY基因的HMG区(Highmobilitygroup)呈现高度的保守性,与人、小鼠、猪等的相似性达到70%。将SRY基因与pET-28a( )载体相连,构建表达载体pET-28a/SRY;把该表达载体转入大肠杆菌BL21(DE3),以IPTG诱导30℃诱导4h,SRY蛋白可高效表达,表达产物占总蛋白量的26%。对表达产物进行了Western-blotting检测,并采用亲和层析技术获得了高纯度的牛SRY蛋白。通过PCR技术分别获得牛、人、鼠的苗勒氏管抑制物(MullerianInhibitingsubstances,MIS)启动子,凝胶阻滞试验证明,牛SRY蛋白可与人及牛的MIS启动子结合,但与鼠的Mis启动子不发生相互作用。     

创伤弧菌vvhA基因的克隆、原核表达系统的构建及鉴定

目的 克隆创伤弧菌（Vibrio vulnificus,Vv）溶细胞素基因（υυhA）,构建原核表达系统并鉴定其表达产物的免疫性.方法 采用PCR技术从Vv GTC333和WZ01株DNA中扩增全长υυhA基因,T-A克隆后测定其核苷酸序列.采用pET32a质粒构建vvhA基因原核表达载体,在E coli BL21（DE3）宿主菌中用不同浓度的IPTG诱导目的重组蛋白rVvhA表达,采用Ni-NTA亲和层析法提纯rVvhA,SDS-PAGE检测表达和提纯效果.采用兔抗Vv全菌抗体的Western Blot和兔抗rVvhA血清的免疫扩散试验鉴定其免疫反应性和免疫原性.结果 所克隆的vvhA基因核苷酸序列与GeneBank公布的同源性分别为96.09%和98.26%.在0.5 mmol/L IPTG诱导下,rVvhA产量可占细菌总蛋白的18%.提纯的rVvhA经SDS-PAGE后仅显示单一的蛋白条带.重组蛋白rVvhA能与兔抗Vv全菌抗体发生特异性结合,免疫家兔可获得高效价抗体.结论 该研究成功地构建了创伤弧菌υυhA基因高效原核表达系统,所表达的rVvhA具有良好的免疫原性和免疫反应性,可作为Vv免疫检测试剂盒及疫苗的抗原.