用P.pastoris表达L-阿拉伯糖异构酶及其酶活性分析

目的:用毕赤酵母表达L-阿拉伯糖异构酶。方法:用PCR法扩增大肠杆菌的L-阿拉伯糖异构酶基因,构建含L-阿拉伯糖异构酶基因的毕赤酵母分泌型表达载体pPIC9K-ai。通过电转法将pPIC9K-ai转化毕赤酵母GS115基因组。先筛选出高G418抗性的克隆,然后再从高拷贝的克隆中筛选出高表达重组L-阿拉伯糖异构酶的重组子作为工程菌GS115(pPIC9K-ai)。结果:在甲醇诱导下,摇瓶发酵GS115(pPIC9K-ai)3d,分泌表达L-阿拉伯糖异构酶32 mg/L。结论:毕赤酵母表达的L-阿拉伯糖异构酶具有转化D-半乳糖为D-塔格糖的生物活性。每升GS115(pPIC9K-ai)发酵液能转化D-半乳糖生成30 mgD-塔格糖。     

Genome-wide analysis of Nilaparvata lugens nymphal responses to high-density and low-quality rice hosts

The brown planthopper （BPH） Nilaparvata lugens is an economically impor- tant pest on rice plants. In this study, the higher population density and yellow-ripe stage of rice plants were used to construct adverse survival conditions （ASC） against BPH nymphs. Simultaneously, the low population density and tillering stage of rice plants were used to establish a suitable survival condition （SSC） as a control. Solexa/Illumina sequencing was used to identify genes of BPH nymphs responding to ASC. Significantly longer duration development of BPH nymphs and significantly lower brachypterous ratio of BPH adults were observed by ASC compared with SSC. A total of 2 544 differentially expressed genes （DEGs） were obtained and analyzed by BLASTx, Gene Ontology and KEGG Orthology. Gene ontology analysis revealed that the DEGs were mainly involved in categories of cell, cell part, cellular process, binding, catalytic, organelle and metabolic processes. 1138 DEGs having enzyme commission numbers were assigned to different metabolic pathways. The largest clusters were neurodegenerative diseases （137, 12.0%）, followed by carbohy- drate metabolism （113, 9.9%）, amino acid metabolism （94, 8.3%）, nucleotide metabolism （76, 6.7%）, energy metabolism （64, 5.6%）, translation （60, 5.3%）, lipid metabolism （58, 5.1%）, and folding, sorting and degradation （52, 4.6%）. Expressing profile of 11 DEGs during eight nymphal developmental stages of BPH were analyzed by quantitative real- time polymerase chain reaction. The 11 genes exhibited differential expression between ASC and SSC during at least one developmental stage. The DEGs identified in this study provide molecular proof of how BPH reconfigures its gene expression profile to adapt to overcrowding and low-quality hosts.     

A large-scale gene discovery for the red palm weevil Rhynchophorus ferrugineus （Coleoptera： Curculionidae）

The red palm weevil （RPW; Rhynchophorusferrugineus） is a devastating pest of palms, prevalent in the Middle East as well as many other regions of the world. Here, we report a large-scale de novo complementary DNA （cDNA） sequencing effort that acquired ~5 million reads and assembled them into 26 765 contigs from 12 libraries made from samples of different RPW developmental stages based on the Roche/454 GS FLX platform. We annotated these contigs based on the publically available known insect genes and the Tribolium castaneum genome assembly. We find that over 80% of coding sequences （CDS） from the RPW contigs have high-identity homologs to known proteins with complete CDS. Gene expression analysis shows that the pupa and larval stages have the highest and lowest expression levels, respectively. In addition, we also identified more than 60 000 single nucleotide polymorphisms and 1 200 simple sequence repeat markers. This study provides the first large-scale eDNA dataset for RPW, a much-needed resource for future molecular studies.     

锌胁迫下小麦SSH文库的构建及初步分析

Zn是植物必需的微量元素,同时也是近年来造成环境污染的重金属元素之一.为了从基因表达水平揭示小麦Zn胁迫响应的分子机制,本研究利用抑制差减杂交(suppression subtractive hybridization,SSH)技术构建了Zn胁迫（0.5 mmol/L,1 mmol/L）下小麦的正反向SSH文库.从正反向文库中随机挑选阳性单克隆,并利用通用引物T7/Sp6对其进行验证. 结果显示,正反库中分别获得307和821个EST序列,其片段长度在200～1 000 bp之间,它们反映了Zn胁迫下特异响应的基因.利用BLASTn和BLASTx将这些EST序列进行比对分析,在正、反库中分别筛选出221和641个uniESTs,其中751个uniESTs被注释（包括正库中193个和反库中558个）.这些序列的功能主要涉及信号转导、抗氧化防御、转录与翻译、物质运输、核糖体结构、能量代谢,以及一些功能未知的基因.     

Differences in Incubation Length and Hatchling Morphology among Five Species of Oviparous Phrynocephalus Lizards （Agamidae） from China

We incubated eggs of five Phrynocephalus species （P. albolineatus, P. axillaries, P. grumgrzimailoi, P. helioscopus and P. przewalskii） at three constant temperatures （24℃, 28℃ and 32℃） to examine differences in incubation length and hatchling morphology among species and among temperature treatments. We combined data from this study with those reported previously for P. frontalis and P. versicolor to examine whether embryonic stage at laying is a causal factor for interspecific variation in incubation length, and whether the phylogenetic relationship inferred from hatchling morphology is consistent with the relationship based on mitochondrial DNA data. Mean values for incubation length differed among the five species studied herein and, in all these five species, incubation length decreased at a decreasing rate as temperature increased. In none of the five species did hatchling size （snout-vent length and body mass） and other morphological variables differ among the three temperature treatments. The seven oviparous Phrynocephalus lizards found in China differ from each other in hatchling morphology, and embryonic stage at laying is a causal factor of inter- and intra-specific variation in incubation length. The phylogenetic relationship inferred from hatchling morphology is not always consistent with the currently known relationship based on mitochondrial DNA data. Data from this study and those reported previously allow the conclusion that any Phrynocephalus species may have its unique position along the axis defined by hatchling morphology.     

Gene expression profiles of sodium-dependent vitamin C transporters in mice after alcohol consumption

Alcoholic liver disease （ALD） is a serious fiver problem in western countries. Our previous study has demonstrated that vitamin C plays a protective role in ALD. The vitamin C homeostasis is tightly regulated by sodium-dependent vitamin C transporters （SVCTs） 1 and 2. But the role of two SVCTs in ALD is less understood. In this study, we exam- ined the expression patterns of two SVCTs in mice after alcohol consumption. Our results suggested that alcohol con- sumption obviously increased the expression of two SVCTs in liver and SVCT1 in kidney and intestine, which is important for vitamin C absorption. Vitamin C supplement increased the sera vitamin C content and ameliorated the symptom of ALD. Intestinal absorption and renal re-absorption mediated by SVCTI are key factors to increase the sera vitamin C content after alcohol consumption. We proposed that both reactive oxygen species and low vitamin C concentration regulate the expression of SVCTs, and the protective role of vitamin C is mediated by suppressing the stability of hypoxia-inducible factor-loL. Thus, our study is significant for the understanding of vitamin C homeostasis in ALD and for better use of other antioxidants in ALD therapy.     

GAGE和GSEA在基因集研究中的有效性比较

目的:研究在基因芯片数据分析中自限性原假设和竞争性原假设两类方法的优劣性和准确型,选取各自具有代表性的GAGE(Generally Applicable Gene-set Enrichment)和GSEA(Gene Set Enrichment Analysis)两种基因集分析方法筛选富集基因集的效能,并探讨其筛选效果.方法:采用两种待比较的方法在实际基因表达谱数据中分析研究,比较筛选结果的准确性和科学性,探讨两种方法筛选富集基因集的效果.结果:两方法对已知的基因表达谱数据进行应用分析表明GAGE的检验效能和筛选出的基因集生物学相关性均优于GSEA.结论:GAGE作为一种自限性原假设的基因集分析方法,由于其充分利用了表达谱数据,并将表达数据分为实验集和通路集分别进行分析处理,同时考虑到基因集的上调和下调,其检验效能优于竞争性原假设的GSEA,能够得到更为准确和科学的结果.     

探讨干旱胁迫下植物的信号转导和基因表达

本文主要研究植物在外界胁迫信号的影响下经过第二信使及其下游蛋白激酶的传导反应,对基因表达进行的调控,以及在干旱胁迫信号下植物的感知、传递及其诱导基因的表达调控作用。     

差异显示法克隆与小麦低温诱导相关的磷脂酰乙醇胺结合蛋白基因

本研究利用差异显示技术检测经低温处理的小麦品种"石新828"及对照材料中的mRNA,获得2条差异片段序列。经Blast比对后,发现其中一条长为293bp的差异片段序列与小麦的一个冷调蛋白基因的mRNA(GenBank:AB097412.1)同源性为99%。该基因编码的蛋白属于磷脂酰乙醇胺结合蛋白家族,命名为wpebp。经荧光定量PCR分析,wpebp基因的表达量随低温处理时间的增长总体呈上升趋势,表明该基因与小麦的抗寒能力相关。     

染料木素对MRSA外排蛋白表达的影响

[目的] 研究染料木素对耐甲氧西林金黄色葡萄球菌（MRSA）外排蛋白的影响。[方法] 通过联合药敏实验检测染料木素影响MRSA对环丙沙星的敏感性;利用等重同位素多标签相对定量蛋白质组学（iTRAQ）技术,检测染料木素作用MRSA41577后菌体蛋白表达量的变化;通过生物信息学方法对差异显著的蛋白进行系统分析;通过qPCR和尼罗红外排实验,探讨耐药相关的蛋白介导细菌耐药的作用机制。[结果] 联合药敏实验结果显示,染料木素能增强MRSA对环丙沙星的敏感性;通过iTRAQ技术检测到差异显著蛋白共有129个,包括60个表达上调的蛋白和69个表达下调的蛋白;生物信息学分析结果显示,与细菌耐药相关的蛋白约有14个,其中,通过主动外排系统介导细菌耐药的蛋白主要有PstB、PstS等;qPCR结果显示,与对照组相比,PstB、PstS的基因表达量分别下降了51.6%和78.6%;尼罗红外排实验结果显示,染料木素与尼罗红之间存在竞争关系,为MRSA41577的竞争性抑制剂。[结论] 染料木素可通过降低MRSA41577外排基因pstB和pstS的mRNA表达量,进而影响PstB、PstS外排蛋白的表达来逆转细菌耐药;此外,染料木素还是MRSA41577的竞争性外排抑制剂,可通过与底物竞争外排的方式,使抗菌药物留在菌体内发挥抗菌作用。