Aquifex aeolicus 3-Deoxy-d-manno-2-Octulosonic Acid 8-Phosphate Synthase: A New Class of KDO 8-P Synthase?

The relationship between 3-deoxy-D-manno-2-octulosonic acid 8-phosphate (KDO 8-P) synthase and 3-deoxy-D-arabino-2-heptulosonic acid 7-phosphate (DAH 7-P) synthase has not been adequately addressed in the literature. Based on recent reports of a metal requiring KDO 8-P synthase and the newly solved X-ray crystal structures of both Escherichia coli KDO 8-P synthase and DAH 7-P synthase, we begin to address the evolutionary kinship between these catalytically similar enzymes. Using a maximum likelihood-based grouping of 29 KDO 8-P synthase sequences, we demonstrate the existence of a new class of KDO 8-P synthase, the members of which we propose to require a metal cofactor for catalysis. Similarly, we hypothesize a class of DAH 7-P synthase that does not have the metal requirement of the heretofore model E. coli enzyme. Based on this information and a careful investigation of the reported X-ray crystal structures, we also propose that KDO 8-P synthase and DAH 7-P synthase are the product of a divergent evolutionary process from a common ancestor.     

高通量测序技术及其在微生物学研究中的应用

20世纪70年代发明的核酸测序技术为基因组学及其相关学科的发展做出了巨大贡献,本世纪初发展的以Illumina公司的HiSeq 2000,ABI公司的SOLID,和Roche公司的454技术为代表的高通量测序技术又为基因组学的发展注入了新活力.本文在阐述这些技术的基础上,着重讨论了新一代测序技术在微生物领域中的应用.     

鞭毛介导的运动性与细菌生物膜的相互关系

摘要:由于运动缺陷型细菌形成生物膜的能力会下降,长期以来细菌的运动性都被认为与生物膜的形成呈正相关,但这一理论现在证明还有待商榷,而且运动性不是影响膜形成的绝对因素。本文详细介绍了细菌的生物膜和运动性,并重新定义了两者的相互关系。     

艾比湖湿地芦苇根际土壤氨氧化古菌的多样性和群落结构

【目的】旨在揭示耐盐植物芦苇根际与非根际土壤AOA群落结构间的差异,为深入研究盐生植物根际土壤微生物与耐盐性之间的关系提供理论基础。【方法】应用高通量测序技术以氨单加氧酶基因(amoA)为分子标记,对新疆艾比湖湿地荒漠生态系统不同季节(春、夏、秋)芦苇根际与非根际土壤氨氧化古菌(AOA)的多样性和群落结构进行研究。【结果】结果表明,不同季节芦苇根际土壤AOA多样性和丰富度存在差异,相比非根际土壤,夏季和秋季芦苇根际土壤AOA多样性较低丰富度较高,春季多样性较高丰富度较低。芦苇根际土壤中AOA的多样性为春季夏季秋季。AOA群落组成分析表明,土壤样品中AOA群落主要集中在泉古菌门(Crenarchaeota)和奇古菌门(Thaumarchaeota),其中泉古菌门为主要优势菌门。RDA分析表明,含水量(SM)、有机质(SOM)、总氮(TN)和pH是影响芦苇根际土壤AOA群落多样性和丰富度的主要环境因子。【结论】不同季节芦苇根际土壤AOA多样性及丰富度存在差异,相比非根际土壤,芦苇根际土壤AOA更丰富。     

Kinetic analysis of boron transport in Chara

The permeability of biological membranes to boric acid was investigated using the giant internodal cells of the charophyte alga Chara corallina (Klein ex Will. Esk. R.D. Wood). The advantage of this system is that it is possible to distinguish between membrane transport of boron (B) and complexing of B by plant cell walls. Influx of B was found to be rapid, with equilibrium between the intracellular and extracellular phases being established after approximately 24 h when the external concentration was 50 μM. The intracellular concentration at equilibrium was 55 μM, which is consistent with passive distribution of B across the membrane along with a small amount of internal complexation. Efflux of B occurred with a similar half-time to influx, approximately 3 h, which indicates that the intracellular B was not tightly complexed. The concentration dependence of short-term influx measured with ¹⁰B-enriched boric acid was biphasic. This was tentatively attributed to the operation of two separate transport systems, a facilitated system that saturates at 5 μM, and a linear component due to simple diffusion of B through the membrane. V _max and K _m for the facilitated transport system were 135 pmol m⁻²s⁻¹ and 2 μM, respectively. The permeability coefficient for boric acid in the Chara plasmalemma estimated from the slope of the linear influx component was 4.4 × 10⁻⁷cm s⁻¹ which is an order of magnitude lower than computed from the ether:water partition coefficient for B. Received: 14 August 2000 / Accepted: 16 September 2000     

新型隐球酵母铜应答转录因子Cuf1与荚膜的生物合成的相关性研究

摘要：【目的】新型隐球酵母是人类条件致病真菌,主要感染免疫缺陷患者。该酵母最显著的特征是细胞外包被主要的致病因子-多糖荚膜,其调控机制复杂。本文研究旨在阐述编码铜依赖转录因子的CUF1基因对其荚膜生物合成的负调控作用。【方法】以野生型菌株为对照,对CUF1缺失的突变菌株进行菌落形态观察、荚膜墨汁染色的显微观察、细胞聚沉试验以及荚膜定量分析。【结果】与野生型菌株相比,Δcuf1突变株产生的菌落更粘,显微镜下亦可明显观察到荚膜更厚。同样数量的细胞,突变株聚沉平衡后体积更大。此外,荚膜粗提物定量称重分析也证明突     

高寒草甸植物化学计量比对磷添加的分层响应

为了探明氮(N)限制的植物群落中物种水平和功能群水平的碳(C)、N、磷(P)含量以及C:N:P对P添加的响应是否一致,明确P添加对群落物种构成改变的内在机制。以青藏高原高寒草甸为研究对象, 通过P添加试验, 研究了功能群水平和物种水平生态化学计量比对P添加的响应, 以及P添加对物种水平的优势度和功能群水平生物量的影响。结果表明: 在青藏高原高寒草甸连续5年添加P显著改变了植物的C、N、P含量以及C:N:P, 且在物种水平和功能群水平(不含典型物种)的响应规律基本一致。在禾本科、莎草科和杂类草功能群(不含典型物种)和相应物种水平上P添加对C含量影响不显著。P添加显著增加了禾本科、莎草科、豆科和杂类草4个功能群(不含典型物种)和相应物种水平的植物P含量, 降低了C:P和N:P。禾本科和莎草科的N含量和C:N对P添加在物种水平和功能群水平上(不含典型物种)的响应规律一致, 表现为N含量显著降低, C:N显著增加; P添加使豆科物种水平上N含量显著增加而C:N显著降低, 但在功能群水平上(不含典型物种)无显著作用; 杂类草的N含量和C:N对P添加在物种水平和功能群水平上(不含典型物种)的响应规律均不一致。在N限制的生境中添加P, 禾本科物种在群落中逐渐占据优势跟其增高的N、P利用效率相关, 而杂类草由于逐渐降低的N和P利用效率使其生物量在群落中所占的比重逐渐下降。     

Coating and selective deposition of nanofilm on silicone rubber for cell adhesion and growth

A recently developed method for surface modification, layer-by-layer (LbL) assembly, has been applied to silicone, and its ability to encourage endothelial cell growth and control cell growth patterns has been examined. The surfaces studied consisted of a precursor, with alternating cationic polyethyleneimine (PEI) and anionic sodium polystyrene sulfonate (PSS) layers followed by alternating gelatin and poly-d-lysine (PDL) layers. Film growth increased linearly with the number of layers. Each PSS/PEI bilayer was 3 nm thick, and each gelatin/PDL bilayer was 5 nm thick. All layers were more hydrophilic than the unmodified silicone rubber surface, as determined from contact angle measurements. The contact angle was primarily dictated by the outermost layer. Of the coatings studied, gelatin was the most hydrophilic. A film of (PSS/PEI)₄/(gelatin/PDL)₄/ gelatin was highly favorable for cell adhesion and growth, in contrast to films of (PSS/PEI)₈ or (PSS/PEI)₈/PSS. Cell growth patterns were successfully controlled by selective deposition of microspheres on silicone rubber, using microcontact printing with a silicone stamp. Cell adhesion was confined to the region of microsphere deposition. These results demonstrate that the LbL self-assembly technique provides a general approach to coat and selectively deposit films with nanometer thickness on silicone rubber. Furthermore, they show that this method is a viable technique for controlling cellular adhesion and growth.     

Quantitative bioreduction assays for calibrating spore content and viability of commercial Bacillus thuringiensis insecticides

The redox dyes MTT (3-{4,5-dimethylthiazol-2-yl}-2,5-diphenyl tetrazolium bromide, thiazolyl blue) and XTT (sodium 3′- {1-[(phenylamino)-carbonyl]-3,4-tetrazolium}-bis{4-methoxy-6-nitro} benzene sulphonic acid hydrate) were used as dosimetry reporters in liquid (multi-well) and solid support (membrane) assays to estimate spore viability and content of commercial BT products derived from fermentation of Bacillus thuringiensis subsp kurstaki (Btk) and subsp israelensis (Bti). QC tests on five BT products were done using spore, protein and gene contents, and morphology (scanning electron microscopy) as indicators. Spore levels (6–40 × 10⁹ colony forming units (CFU) ml⁻¹) were approximately equivalent when based on International Units (IU) of potency. Spore viability was highly stable over a broad range of temperatures and pHs but germination and growth were restricted (optima: pH ≈ 7.5 and 37°C). Quantitative bioreduction activity (QBA) of MTT and XTT correlated with vegetative cell production. Depending on manipulation of pre-assay conditions, both dyes could discriminate doses from ∼2 to 10⁹ spores (or 10⁻³ to 10⁶ IU). Non-toxic effects of XTT and its formazan product enabled automated collection of data on growth and dose. Solid support assays also reliably estimated product dosage by in situ detection of CFU. With appropriate reference dilutions of microbe-containing products the QBA assays can provide high throughput QC monitoring of product comparisons and field release in aerial spray or water injection applications. Received 18 December 1996/ Accepted in revised form 11 March 1997     

Release of arachidonic acid by NMDA-receptor activation in the rat hippocampus

In hippocampal slices arachidonic acid released after NMDA post-synaptic receptor activation is thought to act as a retrograde trans-synaptic messenger which facilitates the pre-synaptic release of L-glutamate to be involved in the expression of long-term synaptic potentiation (LTP). We measured the mass amount of arachidonic acid released from hippocampal slices incubated under conditions which maintain the electrophysiological responsiveness of the slice. Melittin released arachidonic, oleic and docosahexaenoic acids by phospholipase A₂ activation but not palmitic or stearic acids. Of greater interestl-glutamate, N-methyl-d-aspartate and incubation conditions known to induce LTP selectively and rapidly increased the release of archidonic acid in amounts over basal levels of 200–300 ng/mg protein. This is the first direct determination of the mass amount of arachidonic acid released following NMDA receptor activation in the hippocampus.Special issue dedicated to Dr. Louis Sokoloff.