Individual-based model of spatio-temporal dynamics of mixed forest stands

This research presents the results of constructing and parameterizing an individual-based model of spatiotemporal dynamics of mixed forest stands. The model facilitates computerized experiments with forest stands having different combinations of species and age structures. These forest stands grow on temperate areas where light is the main system-forming factor that shapes and develops forest ecosystems. The model TEMFORM (TEMperate FORests Model) is developed with few equations and parameters, most of which can be estimated using standard forest inventory data. Parameterization of the model used the growth tables of a set of basic forest-forming species in Far East Russia. Simulation results of the development of the natural single- and mixed-species stands and the effects of different types of disturbances on the stand dynamics and compositions are presented.     

佛山市禅城区小型兽类组成及多样性的时空变化

城市化导致的野生动物生境破碎化,会使野栖小型兽类更多聚集分布于城区斑块化的农区和公园生境中,因而其多样性组成及时空变化模式可能会与其他区域不同,了解这些模式对防控城区野栖小型兽类的危害具有重要支撑作用。本研究于2020年12月至2021年10月,分4个季节在佛山市禅城区3个公园和7处农区生境中以夹捕法调查小型兽类,比较了小型兽类的种类、密度和生态学指标的时空差异。共有效置夹1843夹次,捕获小型兽类2目2科4属7种共244只。其中劳亚食虫目（Eulipotyphla）的臭鼩（Suncus murinus）占总捕获动物的48.77%;啮齿目中黑缘齿鼠（Rattus andamanensis,20.90%）和卡氏小鼠（Mus caroli,18.03%）为优势鼠种,黑缘齿鼠为佛山市新增记录,卡氏小鼠为禅城区新增记录。4次调查总捕获率达13.28%±0.93%,12月的啮齿类捕获率显著低于4月;公园的总捕获率和啮齿类捕获率都比农区略高,而臭鼩捕获率比农区略低,但差异不显著。12月的物种丰富度和优势度指数最高,均匀度指数最低;4月的多样性指数最高,优势度指数最低;而10月的均匀度指数最高,物种...     

Spatiotemporal distribution of fruitbodies of ectomycorrhizal fungi in an Abies firma forest

 Spatial associations between ectomycorrhizal (ECM) fungi and their presumed host trees, and spatiotemporal associations among ECM fungi were surveyed for 3 years in an Abies firma-dominated forest in central Japan. A total of 39 species in 13 genera of ECM fungi were recorded, with more species in the Russulaceae than any other family. Russula ochroleuca, Russula sp.1 and Strobilomyces confusus tended to produce their fruitbodies on the forest floor directly under the crown of A. firma, whereas those of Inocybe cincinnata, Gomphus floccosus and G. fujisanensis were aggregated in limited areas outside the A. firma crown. Interspecific spatial associations were analysed for Russula sp.1, which was the most dominant species, and three other frequent species, I. cincinnata, S. confusus and R. ochroleuca. Pairwise, Russula sp.1 with I. cincinnata, with S. confusus or with R. ochroleuca showed an association which was exclusive, overlapping or independent, respectively. Fruiting phenologies differed in that S. confusus showed a peak density in the summer, whereas the other three species peaked in the autumn. These results suggest that the formation of ECM fruitbodies can be partitioned among the species both spatially and temporally. Accepted: 7 July 1998     

Photocaged functional nucleic acids for spatiotemporal imaging in biology

Imaging of species in living organisms with high spatiotemporal resolution is essential for understanding biological processes. While functional nucleic acids (FNAs), such as catalytic nucleic acids and aptamers, have emerged as effective sensors for a wide range of molecules, photocaged control of these FNAs has played a key role in translating them into bioimaging agents with high spatiotemporal control. In this review, we summarize methods and results of photocaged FNAs based on photolabile modifications, photoisomerization, and photothermal activation. Future directions, including strategies to improve the performance of these photocaged FNAs, are also described.     

Spatiotemporal patterns provoked by environmental variability in a predator–prey model

The emergence of spatiotemporal patterns in the distribution of species is one of the most striking phenomena in ecology and nonlinear science. Since it is known that spatial inhomogeneities can significantly affect the dynamics of ecological populations, in the present paper we investigate the impact of environmental variability on the formation of patterns in a spatially extended predator–prey model. In particular, we utilize a predator–prey system with a Holling III functional response and introduce random spatial variations of the kinetic parameter signifying the intrinsic growth rate of the prey, reflecting the impact of a heterogeneous environment. Our results reveal that in the proximity of the Hopf bifurcation environmental variability is able to provoke pattern formation, whereby the coherence of the patterns exhibits a resonance-like dependence on the variability strength. Furthermore, we show that the phenomenon can only be observed if the spatial heterogeneities exhibit large enough regions with high growth rates of the prey. Our findings thus indicate that variability could be an essential pattern formation mechanism of the populations.     

反差极性敏感型运动边缘检测神经元的计算模型

在栖类、在和哺乳类某些运动的视觉系统中发现 对刺激反差极性（变亮或变暗）敏感的运动边缘检测神经元。为揭示这类神经元的信息加工原理,以Ｗｉｍｂｂａｕｅｒ等人提出了捍延ｉｎｓｋｅｒ网络为基础,将不同的时空动态受野线性组合,建立了蟾蜍神经节Ｒ３类神经元和家鸽岛豆（ｎＬＭ）神经元的感受野模型,并模拟了Ｒ３凶对蠕虫样刺激物的“头／尾偏爱”特征,细胞对刺激物的选择性以及ｎＬＭ神经元对运动边缘的反差、方向、边缘     

Time has come to address the spatiotemporal combinatorial model for CCN proteins biological activitites by spatial transcriptomics and genome wide association studies

It is a renewed pleasure to wish our authors, editorial board members, and readership an excellent new year, full of professional and personal satisfactions. According to the Chinese Horoscope, 2023, the Year of Water Rabbit, is predicted to be quiet; a year to step back, assess the situation and make plans. It will be the time to carefully appraise, with the patience of the Water Rabbit, the future and scientific wealth of our Journal. Based on a few aspects of the CCN3 biology status that remain open questions, I am presenting below a short summary of a few CCN research directions that in my eyes, become necessary to undertake through wide-angle collaborative approaches.     

Report on the 11th international workshop on the CCN family of genes,Nice, October 20–24, 2022

In celebration of the twentieth anniversary of the inception of the CCN society, and of the first post-Covid-19 live meeting, the executive board of the ICCNS had chosen Nice as the venue for the 11th International workshop on the CCN family of genes. On this occasion participation in the meeting was extended to colleagues from other cell signaling fields who were invited to present both an overview of their work and the future directions of their laboratory. Also, for the first time, the members of the JCCS Editorial Board were invited to participate in a JCCS special session during which all aspects of the journal « life » were addressed and opened to free critical discussion. The scientific presentations and the discussions that followed showed once more that an expansion of the session topics was beneficial to the quality of the meeting and confirmed that the ARBIOCOM project discussed last April in Nice was now on track to be launched in 2023. The participants unanimously welcomed Professor Attramadal’s proposition to organize the 2024, 12th International CCN workshop in Oslo, Norway.     

Spatial and temporal relation rule acquisition of eutrophication in Da’ning River based on rough set theory

Since the mechanisms of eutrophication are complicated and many other factors affect these mechanisms, methods such as quantitative statistics and numerical simulation, have their limitations in analyzing the spatiotemporal relations of eutrophication. The rough set theory (RST) was used to describe the spatiotemporal relations of eutrophication in Da’ning River without any of other prior knowledge. Rules of relations in time and space affecting eutrophication in the Da’ning River backwater area were extracted by taking representation of relations in time and space among eutrophication at a long river section of Da’ning River backwater area, by taking nine sets of encrypted monitoring data in 2003 as example, and by making season, area and eutrophication level as the decision attributes, respectively, to represent specific features of the eutrophication phenomenon in the Da’ning River backwater area from the points of view of time, space, and level by analysis of spatiotemporal relationship rules. This study result shows that the temporal and spatial differences between eutrophication phenomena in the long river section of the Da’ning River backwater area are significant. Eutrophication for each section is less serious in autumn, more in spring and most in summer. Eutrophication degree gradually decreases from estuary to upstream, which is in conformity with reality. The RST of eutrophication in Da’ning River may inform environmental decision-makers and assist them in making more cost-effective decisions.     

Risky Business: Temporal and Spatial Variation in Preindustrial Dryland Agriculture

Traditional dryland agriculture in the Pacific island was often labor-intensive and risky, yet settlement and farming in dry areas played an important role in the development of Polynesian societies. We investigate how temporal and spatial climatic fluctuations shape variation in agricultural production across dryland landscapes. We use a model that couples plant growth, climate, and soil organic matter dynamics, together with data from Kohala, Hawai'i, to understand how temperature, rainfall, nitrogen availability, and cropping activity interact to determine yield dynamics through time and space. Due to these interactions, the statistical characterization of rainfall alone is a poor characterization of agricultural yield. Using a simple linear model of human population dynamics, we show that the observed yield variation can affect long-term population growth substantially. Our approach to analyzing spatial and temporal fluctuations in food supply, and to interpreting the population consequences of these fluctuations, provides a quantitative evaluation of agricultural risk and human carrying capacity in dry regions.