Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of <Emphasis Type="Italic">Campylobacter jejuni</Emphasis>

Background  

Multi-Locus Sequence Typing (MLST) has emerged as a leading molecular typing method owing to its high ability to discriminate among bacterial isolates, the relative ease with which data acquisition and analysis can be standardized, and the high portability of the resulting sequence data. While MLST has been successfully applied to the study of the population structure for a number of different bacterial species, it has also provided compelling evidence for high rates of recombination in some species. We have analyzed a set of Campylobacter jejuni strains using MLST and Comparative Genomic Hybridization (CGH) on a full-genome microarray in order to determine whether recombination and high levels of genomic mosaicism adversely affect the inference of strain relationships based on the analysis of a restricted number of genetic loci.     

Length, breadth, and elongation of avian eggs from the tables of Sch?nwetter

Summary UsingSchönwetter's data base regression equations are derived expressing egg length and egg breadth as a function of egg mass for Passerines (n=3929) and non-Passerines (n=3217). For both groups these show a variation around the mean which is twice as large for length as for breadth. The average elongation (length/breadth) ist presented for 27 orders ranging from 1.61 in Apterygiformes and Gaviiformes to 1.21 in Strigiformes as well as examples of a few families where elongation increases or decreases as egg mass becomes larger. Egg mass can be estimated from the relationship where egg mass=k(LB²). Mean values, SD, and range of k for both groups are given, but for any particular species are best derived from the dimensions of L, B, and egg mass inSchönwetter's tables.

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Länge, Breite und Form der Vogeleier auf der Grundlage der Tabellen vonSchönwetter

Zusammenfassung Regressionsgleichungen für Eilänge und Eibreite als Funktion der Eimasse ergeben für Passeres (3929 Arten) und Non-Passeres (3217 Arten) eine Streuung um den Mittelwert, die für Länge doppelt so hoch wie für die Breite ist. Das Verhältnis Länge: Breite reicht bei 27 Ordnungen von 1.61 bei Apterygiformes und Gaviiformes bis 1.21 bei den Strigiformes. In Beispielen für einzelne Familien steigt oder fällt der Wert mit zunehmender Eimasse. Letztere kann bestimmt werden gemäß k · (L · B²), wobei k eine Konstante darstellt. Mittelwerte, Standardabweichung und Konstante werden für Passeriformes und Non-Passeriformes angegeben, doch für einzelne Arten hält man sich am besten an die Werte beiSchönwetter.

     

THE SIZE OF BACTERIA AS THE CAUSE OF THE LOGARITHMIC ORDER OF DEATH

Death of unicellular organisms is brought about by the inactivation of a certain number of essential molecules in the cell. If the number of these essential molecules is only one per cell, the order of death is the same as if the cell were identical with this molecule; the order of death is logarithmic following the mass law. If more than one molecule must be inactivated before the cell dies, the order of death is not logarithmic. With 2 or 3 molecules, it still resembles the logarithmic order, but with an increasing number of reacting molecules, it approaches more and more the order of death known with higher organisms, namely a period of no death, followed by a comparatively short period of rapid death. The decision whether or not the logarithmic order exists, should be based upon the constancy of the death rate See PDF for Equation. The existence of a straight line when logarithms of survivors are plotted against time, is not sufficient proof unless the initial number of cells is included. These deductions are made with the assumption that all organisms are exactly alike, and show no individual variations or graded resistance. With most bacteria, the order of death is so nearly logarithmic that death must be brought about by the inactivation of only one molecule, though there may be several molecules of this same type in each cell.     

Altered protein expression pattern in colon tissue of mice upon supplementation with distinct selenium compounds

The essential trace element selenium (Se) is controversially discussed concerning its role in health and disease. Its various physiological functions are largely mediated by Se incorporation in the catalytic center of selenoproteins. In order to gain insights into the impact of Se deficiency and of supplementation with different Se compounds (selenite, selenate, selenomethionine) at defined concentrations (recommended, 150 μg/kg diet; excessive, 750 μg/kg diet) in murine colon tissues, a 20‐week feeding experiment was performed followed by analysis of the protein expression pattern of colon tissue specimens by 2D‐DIGE and MALDI‐TOF MS. Using this approach, 24 protein spots were identified to be significantly regulated by the different Se compounds. These included the antioxidant enzyme peroxiredoxin‐5 (PRDX5), proteins with binding capabilities, such as cofilin‐1 (COF1), calmodulin, and annexin A2 (ANXA2), and proteins involved in catalytic processes, such as 6‐phosphogluconate dehydrogenase (6PGD). Furthermore, the Se compounds demonstrated a differential impact on the expression of the identified proteins. Selected target structures were validated by qPCR and Western blot which mainly confirmed the proteomic profiling data. Thus, novel Se‐regulated proteins in colon tissues have been identified, which expand our understanding of the physiologic role of Se in colon tissue.     

Epidemiology, Relative Invasive Ability, Molecular Characterization, and Competitive Performance of Campylobacter jejuni Strains in the Chicken Gut

One hundred forty-one Campylobacter jejuni isolates from humans with diarrhea and 100 isolates from retailed poultry meat were differentiated by flaA typing. The bacteria were isolated in a specific geographical area (Dunedin) in New Zealand over a common time period. Twenty nine flaA types were detected, one of which (flaA restriction fragment length polymorphism type 15 [flaA-15]) predominated among isolates from humans (~30% of isolates). This strain was of low prevalence (5% of isolates) among poultry isolates. flaA-15 strains were five to six times more invasive of HEp2 cells in an in vitro assay than a flaA type (flaA-3) that was commonly encountered on poultry meat (23% of isolates) but was seldom associated with human illness (5%). Competitive-exclusion experiments with chickens, utilizing real-time quantitative PCR to measure the population sizes of specific strains representing flaA-15 (T1016) and flaA-3 (Pstau) in digesta, were carried out. These experiments showed that T1016 always outcompeted Pstau in the chicken intestine. Genomic comparisons of T1016 and Pstau were made using DNA microarrays representing the genome of C. jejuni NCTC 11168. These comparisons revealed differences between the strains in the gene content of the Cj1417c-to-Cj1442c region of the genome, which is associated with the formation of capsular polysaccharide. The strains differed in Penner type (T1016, O42; Pstau, O53). It was concluded that poultry meat was at least one source of human infection with C. jejuni, that some Campylobacter strains detected in poultry meat are of higher virulence for humans than others, and that bacterial attributes affecting strain virulence and commensal colonization ability may be linked.     

Microdistribution of butterflies in a mosaic-like habitat: The role of nectar sources

The microdistribution of five butterfly species through their flying season was analyzed in a mosaic-like habitat, brought about by secondary succession In order to explain the patterns observed, activity patterns and the use and distribution of nectar sources were determined Emphasis was laid on the changing allocation of visits to flower species and changing abundances of flowers during the season The use of nectar sources was basically limited to three flower species, Centaurea scabiosa, C bracteata and Serratula tinctoria As a consequence, niche breadth values were generally low and niche overlaps generally high Some butterflies changed their patterns of flower visits during the season and therefore reduced niche overlap with the other butterfly species The microdistribution of Melanargia galathea, Lysandra condon, Ochlodes venatus and Lictoria achilleae was strongly influenced by the distribution of their preferred nectar sources as well as by areas generally rich in flowers Changing flower preferences of Melanargia galathea and Lysandra coridon males during the course of the season were also expressed by changes in the correlations between the distribution of these butterflies and their nectar plants The distribution of nectar sources was not found to be of importance for Coenonympha arcanta, a species which rarely visited flowers     

Comparison of Vero cell assay and PCR as indicators of the presence of verocytotoxigenic Escherichia coli in bovine and human fecal samples.

Comparisons were made between Vero cell assay (VCA) and PCR as indicators for the detection of verocytotoxigenic Escherichia coli (VTEC; also known as Shiga-like toxin-producing E. coli) and as predictors of VTEC isolation from bovine and human fecal samples. Fecal samples were collected as part of a survey on the prevalence of VTEC on dairy farms in southern Ontario (J. B. Wilson et al., J. Infect. Dis., 174:1021-1027, 1996). A total of 2,655 samples were examined by VCA and PCR, 2,153 originating from cattle and 502 originating from humans. Overall, 36.2% of the samples were positive in the VCA and 38.7% were positive by PCR. Of the VCA-positive samples screened, 41.6% yielded a VTEC isolate. For both human and bovine samples, a significant positive association between PCR result and VCA titer (P = 0.0001) was found. In addition, there was a significant positive association between the PCR result and VTEC isolation from VCA-positive samples for cattle (odds ratio = 9.1, P < 0.0001). For bovine samples positive in the VCA, VCA titer was significantly associated with the probability of obtaining a VTEC isolate. Agreement between VCA and PCR was good for both bovine and human samples (kappa = 0.69 and 0.64, respectively). The sensitivity and specificity of the PCR with respect to the VCA for bovine samples were 82.0 and 86.5%, respectively, and those for human samples were 59.3 and 98.1%, respectively. Although correlation between VCA and PCR results was not absolute, when used in conjunction, these tests complemented one another as predictors of VTEC isolation.