Studies on the amino groups of myosin ATPase. Trinitrophenylation of reactive lysyl residue in ventricular and atrial myosins

Myosin and heavy meromyosin from ventricular, atrial, and skeletal muscle were purified and trinitrophenylated by 2,4,6-trinitrobenzene sulfonate. The trinitrophenylation reaction followed a complex kinetics consisting of a fast and slow reaction in all preparations studied. Reactive lysine residues were trinitrophenylated during the fast reaction with a concomitant decrease in K⁺ (EDTA)-activated ATPase and an increase in Mg²⁺-stimulated ATPase activities of myosin. The extent of increase in Mg²⁺-mediated ATPase was the highest with skeletal and the lowest with atrial myosin. The trinitrophenylation of the less reactive lysyl residues continued during the slow reaction. The rate constants of the reactions and the number of reactive lysine residues were evaluated by computer analyses of the trinitrophenylation curves. Two reactive lysine residues were found in skeletal and ventricular myosins while their number in atrial myosin was somewhat lower. The rate of trinitrophenylation in skeletal muscle myosin or heavy meromyosin was always higher than in the two cardiac myosin isozymes. Addition of KCl increased the trinitrophenylation of both highly reactive and slowly reactive lysyl residues in all of the three heavy meromyosins, however, the effect was more profound with cardiac heavy meromyosins. Addition of MgADP induced spectral changes in trinitrophenylated skeletal but not in cardiac myosins. Similar changes occurred in skeletal and to a lesser degree in ventricular heavy meromyosin, but no definite spectral changes were observed in atrial heavy meromyosin. The findings suggest that structural differences exist around the reactive lysyl residue in the head portion of the three myosins.     

Cofilin (ADF) affects lateral contacts in F-actin

The effect of yeast cofilin on lateral contacts between protomers of yeast and skeletal muscle actin filaments was examined in solution. These contacts are presumably stabilized by the interactions of loop 262-274 of one protomer with two other protomers on the opposite strand in F-actin. Cofilin inhibited several-fold the rate of interstrand disulfide cross-linking between Cys265 and Cys374 in yeast S265C mutant F-actin, but enhanced excimer formation between pyrene probes attached to these cysteine residues. The possibility that these effects are due to a translocation of the C terminus of actin by cofilin was ruled out by measurements of fluorescence resonance energy transfer (FRET) from tryptophan residues and ATP to acceptor probes at Cys374. Such measurements did not reveal cofilin-induced changes in FRET efficiency, suggesting that changes in Cys265-Cys374 cross-linking and excimer formation stem from the perturbation of loop 262-274 by cofilin. Changes in lateral interactions in F-actin were indicated also by the cofilin-induced partial release of rhodamine phalloidin. Disulfide cross-linking of S265C yeast F-actin inhibited strongly and reversibly the release of rhodamine phalloidin by cofilin. Overall, this study provides solution evidence for the weakening of lateral interactions in F-actin by cofilin.     

Extracellular matrix vesicles in rat bone after parathyroidectomy

Summary The enzymatic activity of bone matrix vesicles from parathyroidectomized rats was determined and compared to the activity of vesicles from sham operated and normal animals. The vesicles were isolated from the alveolar bone by collagenase digestion and differential centrifugation and further purified on a discontinuous sucrose density gradient. The amount of extractable protein and the activity of alkaline phosphatase, acid phosphatase, and ATPase in the vesicle fractions thus obtained did not differ significantly from the values characteristic of preparations from control rats. It may therefore be suggested that parathyroid hormone depletion and the associated hypocalcemia have no significant effect on the occurrence and phosphatase activity of bone matrix vesicles.     

Spatial relationship between a fast-reacting thiol and a reactive lysine residue of myosin subfragment 1

Fluorescence energy transfer was used to examine the spatial proximity between two key side chains in myosin subfragment 1 (S-1), viz., the reactive thiol (SH1) located on the C-terminal 20K tryptic fragment and the reactive lysyl (RLR) on the N-terminal 27K tryptic fragment of S-1 heavy chain. S-1 was specifically labeled at SH1 with an energy donor, N-(iodoacetyl)-N'-(5-sulfo-1-naphthyl)ethylenediamine (AEDANS), and at RLR with an energy acceptor, 2,4,6,-trinitrobenzenesulfonate (TNBS). Prior blocking of SH1 with AEDANS increased the pK of RLR from 9.04 to 9.42. Trinitrophenylation of SH1-blocked S-1 was about 50% slower and sharply reduced the Ca2+ ATPase activity. Reciprocally, blocking of RLR with TNBS slowed the rate of reaction of SH1 and AEDANS by 40-60%. Addition of the second label does not grossly alter the conformation resulting from the first label. S-1 labeled at RLR with TNBS and at SH1 with optically inert iodoacetamide shows the same TNP difference spectrum +/- MgADP (lambda min 365 nm) as S-1 with S 1 free. Also, S-1 labeled at SH1 with AEDANS and at RLR with an optically inert methyl group shows the same AEDANS emission spectrum (lambda em max 475 nm), excited-state lifetime (tau = 20.3 ns) and rotational correlation time (phi = 106 ns) as S-1 with RLR free. When the decrease of either the quantum yield or the excited-state lifetime of the donor in the absence and presence of the acceptor was measured, the energy transfer efficiency was found to be 70%. The apparent interchromophore distance was calculated to be 2.6 nm through the use of the F?rster equation with an uncertainty of less than 12%.     

Bryozoaires et Brachiopodes des “Calcaires bajociens a Bryozoaires” des Causses (France) et leur paléoécologie

Two Lower Bajocian new localities, with many silicified bryozoans and brachiopods have been discovered in Causses (France): Saint-Rome-de-Cernon (Aveyron) and Mende (Lozère). The study of the faunas allows to increase the anterior knowledges supplied by the study of localities in the South of Causses (neighbourhood of Alzon and Sumène = North of the Seuil sud-caussenard).The interest is, at first, the distance between the localities: Mende in the North, Saint-Rome-de-Cernon in the West. Moreover, in the second, well-preserved faunas were fossilized without transport. Bryozoans and brachiopods are very numerous. Large and complete bryozoan colonies have been get out by action of HCl. Fine internal structures like rhynchonellid Nannirhynchia or like thecidean transversarium and hemispondylium have been studied. At last, observations and paleoecological hypothesis are drawn, likewise comparison between three localities or locality-groups known in the Causses basin.The fauna from Saint-Rome-de-Cernon is biocoenosis, the substratum was soft, the hydrodynamism low and the depth, according to lamellibranchs, about 200 meters. The beds with bryozoans and small brachiopods contain a fauna with two predominant bryozoan species: Ceriocava straminea and Mesenteripora wrighti. These two species could built large colonies, in spite of fine granulometry of the sedimentary bottom. These colonies provided supports to less adapted bryozoans, to thecidids and to lamellibranch Lopha. The beds with terebratulids and bryozoans contain lesser bryozoans and thecidids. Terebratulids are the main group and are fixed with their peduncle to organic support above the irregular deposits. Beside these benthic animals, the rhynchonellid Nannirhynchia campestriensis is epibiontic on gorgonids or epiphytic on floating sea-weeds.On the contrary, all fossils from Mende have been more or less carried, excepted large sponges perhaps. The most numerous bryozoans (Ceriocava straminea, Mesenteripora wrighti) and numerous Lenticulines (Foraminifera) lived on hard bottom with moving water in community with crinoids. It is possible that a smaller part of bryozoans, requiring lower hydrodynamism, lived, either in sheltered parts of the crinoid community or closer to the sedimentation zone. Thecidids were fixed either on bryozoans in crinoid communities or on shelly remains and on bryozoans nearer to the sedimentation zone. Like in Saint-Rome-de-Cernon, Nannirhynchia campestriensis was epibiontic, or epiphytic, or both.In comparison with the whole localities from the Seuil sud-caussenard, we notice the simplicity of Saint-Rome-de-Cernon and Mende. The localities from the Seuil sud-caussenard were assemblages proceeding from 2 or 3 biotops. On the contrary, at Saint-Rome-de-Cernon we have a biocoenosis and at Mende a thanatocoenosis supplied by one biotop almost.     

Modification of myosin subfragment 1 tryptophans by dimethyl(2-hydroxy-5-nitrobenzyl)sulfonium bromide

Modification of tryptophanyl residues (Trps) of myosin subfragments 1 (S-1) was performed with dimethyl(2-hydroxy-5-nitrobenzyl)sulfonium bromide (DHNBS). Under controlled conditions, pH 6 at 0 degrees C and 10-min reaction with 10-100-fold molar excess, K+(EDTA) activity was reduced down to less than half, whereas Ca2+-ATPase activity increased and acto-S-1-ATPase was not affected. The number of modified Trps (up to 2.5) agreed well with the number of 2-hydroxy-5-nitrobenzyl moieties incorporated in S-1. The thiol groups of S-1 were not affected up to 50-fold molar excess of DHNBS, thus indicating that the modification was selective for Trps. The modification of as few as one Trp caused a blue shift of the emission spectrum, accompanied by a reduction in the fluorescence quantum yield. The accessibility of Trps to the fluorescence quencher acrylamide is drastically reduced upon modification, indicating that DHNBS-reactive Trps are more "exposed" than the DHNBS-refractive ones. DHNBS modification did not seem to affect the ATP-induced tryptophan fluorescence enhancement of S-1. The effect of DHNBS modification of the intrinsic fluorescence of S-1 indicates that the modified Trps are located in a polar environment and that they may be identical with the long-lifetime Trps of Torgerson [Torgerson, P. (1984) Biochemistry 23, 3002-3007]. The most reactive Trp is located in the N-terminal 27-kDa fragment of the S-1 heavy chain. It might also be inferred from the above data that the nonexposed and ATP-perturbed Trp(s) is (are) located in the 50-kDa fragment.     

The <Emphasis Type="Italic">NOLA2</Emphasis> and <Emphasis Type="Italic">RPS3A</Emphasis> genes as highly informative markers of human squamous cell carcinoma of lung

cDNA libraries enriched with sequences that are differentially transcribed in normal and tumor tissues were prepared using the subtractive hybridization of mixtures of cDNAs from ten patients with squamous cell carcinoma (lung cancer) and the corresponding mixtures of cDNAs from normal tissues of the same patients. An analysis of the libraries revealed two genes, NOLA2 and RPS3A, whose expression in patients with squamous cell carcinoma increased by 70%. A high frequency of enhanced expression of these genes in the cancer makes them highly informative markers of squamous cell carcinoma, which, together with other markers, can be used for reliable diagnosis of the disease.__________Translated from Bioorganicheskaya Khimiya, Vol. 31, No. 2, 2005, pp. 195–199.Original Russian Text Copyright © 2005 by Slizhikova, Vinogradova, Sverdlov.     

The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p

A major mechanism of eukaryotic mRNA degradation initiates with deadenylation followed by decapping and 5' to 3' degradation. We demonstrate that the yeast EDC1 mRNA, which encodes a protein that enhances decapping, has unique properties and is both protected from deadenylation and undergoes deadenylation-independent decapping. The 3' UTR of the EDC1 mRNA is sufficient for both protection from deadenylation and deadenylation-independent decapping and an extended poly(U) tract within the 3' UTR is required. These observations highlight the diverse forms of decapping regulation and identify a feedback loop that can compensate for decreases in activity of the decapping enzyme. Surprisingly, the decapping of the EDC1 mRNA is slowed by the loss of Not2p, Not4p, and Not5p, which interact with the Ccr4p/Pop2p deadenylase complex. This indicates that the Not proteins can affect decapping, which suggests a possible link between the mRNA deadenylation and decapping machinery.     

Influence of Osmolytes on Inactivation and Aggregation of Muscle Glycogen Phosphorylase <Emphasis Type="Italic">b</Emphasis> by Guanidine Hydrochloride. Stimulation of Protein Aggregation under Crowding Conditions

The effects of the osmolytes trimethylamine-N-oxide (TMAO), betaine, proline, and glycine on the kinetics of inactivation and aggregation of rabbit skeletal muscle glycogen phosphorylase b by guanidine hydrochloride (GuHCl) have been studied. It is shown that the osmolytes TMAO and betaine exhibit the highest protective efficacy against phosphorylase b inactivation. A test system for studying the effects of macromolecular crowding induced by osmolytes on aggregation of proteins is proposed. TMAO and glycine increase the rate of phosphorylase b aggregation induced by GuHCl.