A New <Emphasis Type="Italic">Escherichia coli</Emphasis> Strain Producing Human Tumor Necrosis Factor

An Escherichia coli strain producing human tumor necrosis factor (TNF-α) was obtained using a semisynthetic gene partially optimized in respect of codon composition and a phage T7 promoter. The expression product was accumulated in cells as inclusion bodies in a yield of 50–70 mg/l of culture medium. The recombinant TNF-α in the form of inclusion bodies was used for immunization of rats to give a polyclonal antiserum. The resulting antibodies were specific under the immunoblotting conditions to the antigen used for the immunization. A dilution-based refolding procedure was developed; it provided a yield of soluble protein exceeding 85%.     

Regulatory potential of S/MAR elements in transient expression

S/MARs (scaffold/matrix attachment regions) are the DNA regions that are involved in the interaction with the nuclear matrix and are identified by in vitro methods. According to the available information, S/MARs possess an insulating activity, i.e., the ability to block the interaction between the enhancer and promoter in vivo, and are, probably, intact insulators or their fragments. Nevertheless, there is still no direct proof for this correspondence. To obtain additional information on the insulator activity of S/MARs, we selected five DNA fragments of different lengths and affinities for the nuclear matrix from a previously constructed library of S/MARs and tested their ability to serve as insulators. Two of five elements exhibited an insulator (enhancer blocking) activity upon the transient transfection of CHO cells. None of the S/MARs displayed either promoter or enhancer/silencer activities in these cells.Translated from Bioorganicheskaya Khimiya, Vol. 31, No. 1, 2005, pp. 77–81.Original Russian Text Copyright © 2005 by Sass, Ruda, Akopov, Snezhkov, Nikolaev, Sverdlov.     

DNA diversity of human populations from Eastern Europe and Siberia studied by multilocus DNA fingerprinting

We used DNA fingerprinting with M13 phage DNA as a probe to estimate the degree of genomic variability and genetic relationships in a heterogeneous group of 13 populations from Eastern Europe and Siberia. The popultaions belong to three language families: Indo-European (Slavonic: Russians, Byelorussians), Uralic (Finno-Ugric: Maris, Mordvinians, Udmurts), and Altaic (Turkic: Bashkirs, Tatars, Chuvashes, Yakuts). Multivariate statistical analyses were used (multidimensional scaling, cluster, and multiple correspondence analyses), and coefficients of gene differentiation (Gst) were evaluated. The level of interpopulation subdivision in the various ethnic groups appeared to be different: the Byelorussian populations revealed no regional differences, in contrast to the Bashkir populations, which formed a heterogeneous group. The populations subdivided into three general clusters: Slavonic populations formed a separate tight cluster characterized by a minimal level of interpopulation diversity, Bashkir and Yakut populations formed the second cluster, and the Finno-Ugric and several populations of the Turkic linguistic groups formed the third cluster. The robustness of these results obtained by different statistical data treatments reveals that multilocus DNA fingerprinting can be reliably used for population studies.Communicated by G. P. Georgiev     

Image analysis for understanding embryo development: a bridge from microscopy to biological insights

The digital reconstruction of the embryogenesis of model organisms from 3D+time data is revolutionizing practices in quantitative and integrative Developmental Biology. A manual and fully supervised image analysis of the massive complex data acquired with new microscopy technologies is no longer an option and automated image processing methods are required to fully exploit the potential of imaging data for biological insights. Current developments and challenges in biological image processing include algorithms for microscopy multiview fusion, cell nucleus tracking for quasi-perfect lineage reconstruction, segmentation, and validation methodologies for cell membrane shape identification, single cell gene expression quantification from in situ hybridization data, and multidimensional image registration algorithms for the construction of prototypic models. These tools will be essential to ultimately produce the multilevel in toto reconstruction that combines the cell lineage tree, cells, and tissues structural information and quantitative gene expression data in its spatio-temporal context throughout development.     

Zonation des brachiopodes du Jurassique moyen sur la marge sud de la Téthys occidentale (Maroc, Algérie occidentale): Comparaison avec la marge nord-téthysienne française

A new and yet unpublished palaeontological revision of very important collections accomplished these last thirty years in many localities of Morocco and Western Algeria joined to the already published data, allow us to propose a biostratigraphical succession of the Middle Jurassic Brachiopods suitable to the Southern Margin of the Western Tethys. This Brachiopod scale is correlated with the standard chronostratigraphy based on ammonites. It involves eight zones and six sub-zones separated by five interval zones where Brachiopods are missing. Moreover, brachiopods have not been discovered in Early Aalenian and Late Callovian. Afterwards, the two brachiopod zonations established on the northern and southern margins of the Western Tethys are compared. On a paleontological plane, a new definition of the species Burmirhynchiaathiensis warrants to precise its vertical distribution (Parkinsoni and Zigzag zones) and to give a better distinction with Burmirhynchiatermierae (Humphriesianum and Niortense zones).     

Jasmonates and related oxylipins in plant responses to pathogenesis and herbivory

The vigorous production of oxygenated fatty acids (oxylipins) is a characteristic response to pathogenesis and herbivory, and is often accompanied by the substantial release of small and reactive lipid-fragmentation products. Some oxylipins, most notably those of the jasmonate family, have key roles as potent regulators. Recent advances have been made in understanding oxylipin-regulated signal transduction in response to attack. Much jasmonate signaling takes place via a genetically defined signal network that is linked to the ethylene, auxin, and salicylic acid signal pathways, but a second aspect of jasmonate signaling is emerging. Some jasmonates and several newly discovered cyclopentenone lipids can activate or repress gene expression through the activities of a conserved electrophilic atom group.     

<Emphasis Type="Italic">In vitro</Emphasis> culture of <Emphasis Type="Italic">Chrysanthemum</Emphasis> plantlets using light-emitting diodes

Effects of illumination spectrum on the morphogenesis of chrysanthemum plantlets (Chrysanthemum morifolium Ramat. ‘Ellen’) grown in vitro were studied using an illumination system consisting of four groups of light-emitting diodes (LEDs) in the following spectral regions: blue (450nm), red (640nm), red (660nm), and far-red (735nm). Taking into account all differences in shoot height, root length, and fresh and dry weight (FW and DW, respectively), observed while changing the total photon flux density (PFD), the optimal total PFD for growth of chrysanthemum plantlets in vitro was estimated. For 16 h photoperiod and typical fractions of the spectral components (14%, 50%, 28%, and 8%, respectively), the optimal total PFD was found to be 40 μmol m⁻² s⁻¹. Our study shows that the blue component in the illumination spectrum inhibits the plantlet extension and formation of roots and simultaneously increases the DW to FW ratio and content of photosynthetic pigments. We demonstrate photomorphogenetic effects in the blue region and its interaction with the fractional PFD of the far-red spectral component. Under constant fractional PFD of the blue component, the root number, length of roots and stems, and fresh weight of the plantlets have a correlated nonmonotonous dependence on the fractional PFD of the far-red component.     

Physical Activity and Low-Fat Diet: Is it Enough to Maintain Weight Stability in the Reduced-Obese Individual Following Weight Loss by Drug Therapy and Energy Restriction?

DOUCET, ERIC, PASCAL IMBEAULT, NATALIE ALMÉRAS, AND ANGELO TREMBLAY. Physical activity and low-fat diet: Is it enough to maintain weight stability in the reduced-obese individual following weight loss by drug therapy and energy restriction? Obes Res. Objective: The anthropometric and physiological effects of a physical activity (PA) and a mildly energy-restricted low-fat diet (LFD) follow-up program after a long-term dietary restriction were studied in 12 men and 8 women. Research Methods and Procedures: The dietary restriction (?700 kcal/day) was accompanied by a fenfluramine (60 mg/day) or placebo treatment for 15 weeks, whereas the mean duration of the PA-LFD follow-up was 18 weeks. Results: The long-term dietary restriction reduced body weight (?11. 9 and ?7. 6 kg, p<. 001), fat mass (FM) (?10. 6 and ?5. 8 kg, p<0. 01), resting metabolic rate (RMR) (?304 kcal/day, p<0. 01 and ?148 kcal/day, NS) in men and women, respectively. A decrease in fat-free mass (FFM) was also observed in women (?1. 8 kg, p<0. 05). The PA-LFD follow-up preserved weight stability at a reduced body weight and caused an additional significant decrease in FM for men (?3. 4 kg, p<0. 05). This part of the intervention also caused an increase in daily RMR for men (134 kcal/day, NS) to the point where this value no longer differed from the pre-energy restriction value. In contrast, RMR was further reduced in women (?200 kcal/day) to the point where it Significantly differed from initial values (p<0. 01). Resting seated heart rate was reduced by the PA-LFD follow-up in men leading it to differ significantly from both pre- and post-energy restriction values (?8. 5 and ?5. 5 bpm, p<0. 01). Discussion: In conclusion, these results suggest that a PA-LFD follow-up has the potential to permit body weight stability and may even accentuate fat loss in the reduced-obese state. Moreover, resting energy expenditure is increased under such conditions in men. These stimulating effects seem to be specific to energy metabolism since seated heart rate was either further reduced or remained stable in response to the PA-LFD follow-up.     

基于GIS的黄土丘陵沟壑区作物生产潜力模拟研究

从YIELD模型的来源、输入文件及基本参数,模型中作物生产力计算各个子模型以及计算流程4个方面作了简单的叙述,以黄土丘陵沟壑区典型小流域晋西狼窝沟为例,在地理信息系统（GIS）技术十,应用YILD模型对该流域的作物生产潜力进行了模拟,并从作物类型,地类,耕作措施及气候条件4个方面对影响该流域作物产量的因素进行了分析。结果表明,该模型对不同作物的模拟产量在总体上与实体产量基本相符合,表明模型可以应用于黄土丘陵沟壑区的作物产量模拟之中,对于不同地类来说,坝地的土壤水分和以力条件明显高于梯田和坡耕地,因而坝地的模拟产量地高于梯田和坡地,但三者之间的差距没有实测产量显著,耕作措施是提高作物生产力的有效途径,对地膜覆盖,梯田以及施肥等耕作措施的模拟产量表明,这3种耕作措施均能有效的物生产力;其产量提高率均平均在85％以上,其中以施肥对作物的增产作用最大,增产率高达95％,,这与实测产量资料基本一致;气候条件是影响作物生产的直接因素,模拟结果表明模型对降水量和温度等气候条件十分敏感,不同年份降水量和温度的差异将直接导致作物生产力的显著不同。对YIELD模型的模拟结果分析表明,该模型可以有效地应用于黄土丘陵沟壑区的作物生产潜力研究。