Inhibition of glycollate oxidase from parsley leaves by HCO-3.

HCO₃^? is shown to be a noncompetitive inhibitor of glycollate oxidase from parsley leaves with respect ot glycolic acid. The K_i is found to be 20 mM at pH 7,7.     

Demethylation of 7-methoxyisoflavone by Penicillium cyclopium

Summary The ability of various strains of fungi to transform isoflavones was studied. It was found that demethylation of 7-methoxyisoflavon is effected by Penicillium cyclopium.     

Mixture modeling for genome-wide localization of transcription factors

Chromatin immunoprecipitation followed by DNA microarray analysis (ChIP-chip methodology) is an efficient way of mapping genome-wide protein-DNA interactions. Data from tiling arrays encompass DNA-protein interaction measurements on thousands or millions of short oligonucleotides (probes) tiling a whole chromosome or genome. We propose a new model-based method for analyzing ChIP-chip data. The proposed model is motivated by the widely used two-component multinomial mixture model of de novo motif finding. It utilizes a hierarchical gamma mixture model of binding intensities while incorporating inherent spatial structure of the data. In this model, genomic regions belong to either one of the following two general groups: regions with a local protein-DNA interaction (peak) and regions lacking this interaction. Individual probes within a genomic region are allowed to have different localization rates accommodating different binding affinities. A novel feature of this model is the incorporation of a distribution for the peak size derived from the experimental design and parameters. This leads to the relaxation of the fixed peak size assumption that is commonly employed when computing a test statistic for these types of spatial data. Simulation studies and a real data application demonstrate good operating characteristics of the method including high sensitivity with small sample sizes when compared to available alternative methods.     

Differences in epithelial morphology correlate to Na+‐transport: A study of the proximal,mid, and distal regions of the coprodeum from hens on high and low NaCl diet

A study was performed to correlate regional morphology and amiloride inhibitable Na⁺‐transport in the coprodeal epithelium in hens, Gallus domesticus, on low‐NaCl diet and in controls. Proximal (close to colon), mid and distal (close to urodeum) regions were examined using light microscopy, transmission‐ and scanning electron microscopy. Na⁺‐transport was measured electrophysiologically in Ussing‐chambers in the proximal and distal regions. The epithelium, simple and columnar, is composed of absorptive intestinal epithelial cells, goblet cells, brush cells, migrating lymphoid cells, and entero‐endocrine cells. Brush cells, identified in avians for the first time, occur in highest number in the proximal part of the coprodeum in low‐NaCl hens. Na⁺‐transport is high in the low‐NaCl hens, ranging from 347μA/cm² (proximal) to 187μA/cm² (distal). In control hens, which correspond to hens on high‐NaCl diet, it is low in all regions (0–4 μA/cm²). Absorptive intestinal epithelial cells as well as brush cells adapt to variations in transepithelial Na⁺‐transport by regulating height and packing density of their microvilli, number, size, and localization of apical vesicles, and the width of the intercellular space. Regional differences in the epithelial cell composition and ultrastructure are closely correlated to transepithelial Na⁺‐transport but only in low‐NaCl hens, as controls do not show these variations. J. Morphol. 239:75–86, 1999. © 1999 Wiley‐Liss, Inc.