Evolutionary transition pathways for changing peptide ligand specificity and structure

We identified evolutionary pathways for the inter- conversion of three sequentially and structurally unrelated peptides, GATPEDLNQKL, GLYEWGGARI and FDKEWNLIEQN, binding to the same site of the hypervariable region of the anti-p24 (HIV-1) monoclonal antibody CB4-1. Conversion of these peptides into each other could be achieved in nine or 10 single amino acid substitution steps without loss of antibody binding. Such pathways were identified by analyzing all 7 620 480 pathways connecting 2560 different peptides, and testing them for CB4-1 binding. The binding modes of intermediate peptides of selected optimal pathways were characterized using complete sets of substitution analogs, revealing that a number of sequential substitutions accumulated without changing the pattern of key interacting residues. At a distinct step, however, one single amino acid exchange induces a sudden change in the binding mode, indicating a flip in specificity and conformation. Our data represent a model of how different specificities, structures and functions might evolve in protein-protein recognition.     

High gradient magnetic cell separation with MACS.

A flexible, fast and simple magnetic cell sorting system for separation of large numbers of cells according to specific cell surface markers was developed and tested. Cells stained sequentially with biotinylated antibodies, fluorochrome-conjugated avidin, and superparamagnetic biotinylated-microparticles (about 100 nm diameter) are separated on high gradient magnetic (HGM) columns. Unlabelled cells pass through the column, while labelled cells are retained. The retained cells can be easily eluted. More than 10(9) cells can be processed in about 15 min. Enrichment rates of more than 100-fold and depletion rates of several 1,000-fold can be achieved. The simultaneous tagging of cells with fluorochromes and very small, invisible magnetic beads makes this system an ideal complement to flow cytometry. Light scatter and fluorescent parameters of the cells are not changed by the bound particles. Magnetically separated cells can be analysed by fluorescence microscopy or flow cytometry or sorted by fluorescence-activated cell sorting without further treatment. Magnetic tagging and separation does not affect cell viability and proliferation.     

Identification of EBV-DNA in lymph nodes from patients with lymphadenopathy and lymphomas associated with AIDS

Fourteen examples of non-Hodgkin's lymphoma (NHL) and four of Hodgkin's disease in patients with AIDS as well as lymph nodes exhibiting changes related to the lymphadenopathy syndrome (LAS) from 11 HIV-positive individuals were studied for the presence of Epstein-Barr virus (EBV) genome both by in situ DNA hybridization and blotting techniques. Both methods were performed using formalin-fixed paraffin-embedded material. All the NHLs were of high malignancy and all but one were of the B-cell type. Of the four examples of Hodgkin's disease, two were lymphocytic predominant, one of mixed cellularity and one of the nodular sclerosing variety. The lymph nodes of patients with LAS were mostly stage I with marked follicular hyperplasia. In 7 of the 14 NHLs the presence of EBV-DNA was clearly demonstrated by dot-blotting and by in situ hybridization. All lymph nodes from the patients with LAS and AIDS-related Hodgkin's disease were negative for EBV by dot-blot and in situ hybridization assays. We conclude that EBV plays a role in the development of AIDS-related lymphomas, but the fact that half these lymphomas are EBV-negative suggests that other mechanisms such as polyclonal stimulation of B-cells by HIV products may also be important.     

Isolation and characterization of cDNA clones encoding a 18.8 kDa polypeptide,the product of the gene psaL,associated with photosystem I reaction center from spinach

Several cDNA clones encoding subunit XI of photosystem I reaction center (PSI-L) have been isolated from two gt11 expression libraries based on polyadenylated RNA of spinach seedlings illuminated for 4 and 16 h, respectively. The precursor polypeptide made from these recombinant DNAs in vitro can be efficiently imported into isolated spinach chloroplasts. It is correctly processed to the size of the authentic polypeptide and integrates into the photosystem I assembly. The 834 nucleotide sequence of the longest cDNA insert encodes a precursor polypeptide of 24 kDa (216 residues) and a mature protein of probably 18.8 kDa (169 residues). Hydropathy analysis suggests that the polypeptide contains two transmembrane segments. The protein appears to originate in a single-copy gene in spinach and to be decoded from RNA species of ca. 900 bases.     

Transmission of hapten-specific tolerance to an unrelated carrier

The principle of linked recognition is well defined in response and suppression. Yet, to our knowledge, it is not explored in the context of tolerance. To investigate, whether the status of tolerance toward a hapten (TNP) can be transferred to a subsequently introduced carrier, animals which were tolerized by a subimmunogenic dose of hapten (TNP) coupled to syngeneic monoclonal anti-TNP IgG, with the rationale of combining the phenomena of low zone tolerance and syngeneic IgG-induced suppression, were challenged with TNP-horse red blood cells (HRBC). Conjugates of high density (40 mM) TNP-syngeneic IgG (TNP40-IgG) were immunogenic and after challenge with TNP-HRBC, animals responded to TNP and to HRBC. Yet, spleen cells (SC) of mice injected with TNP2.5-IgG and challenged with TNP-HRBC were tolerant against TNP as well as the carrier. Limiting dilution (LD) analysis revealed that subimmunogenic doses of TNP coupled to IgG resulted in diminished activation of help, failure to activate contrasuppressor T cells (TCS), and significantly augmented activation of suppressor T cells (TS). On the other hand, after challenge with TNP-HRBC, activation/expansion of carrier-specific helper (TH), suppressor, and contrasuppressor T cells were not affected by previous immunization with subimmunogenic or immunogenic doses of TNP-IgG conjugates, but HRBC-specific TCS could not interact with TNP-specific TS. Hence, to initiate tolerance it was necessary (and sufficient) that an activated and expanded TS population was not counterregulated by TCS. In this situation, an established status of dominance of suppression for the epitope TNP could not be disrupted by an immunogene carrying a multitude of new epitopes; i.e., tolerization by subimmunogenic doses of the individual epitope TNP resulted in unresponsiveness against any immunogen carrying this epitope.     

Galactosyltransferase and sialyltransferase are located in different subcellular compartments in HeLa cells

Galactosyl- and sialyltransferase have been localized by double immunofluorescence labeling in HeLa cells. Galactosyltransferase was found in a compact juxtanuclear structure previously shown to represent the Golgi apparatus (J. Roth and E.G. Berger (1982) J. Cell Biol. 93, 223-9), whereas sialyltransferase was localized to vesicles spread over the whole cytoplasm. These findings indicate different compartments for both transferases and support a model of subcompartmentation of glycosylation steps along the secretory pathway.     

An src-related tyrosine kinase activity in the hydroid, Hydractinia

Abstract. The metamorphosis of planula larvae of the hydroid, Hydractinia , into primary polyps can be artificially triggered by Li, Rb, and Cs ions, by tumor-promoting phorbol esters [14], and by diacylglycerols. Metamorphosis implies the transition of morphogenetically quiescent cells to a state of terminal differentiation or transdifferentiation. Among the events which occur during the first 2.5 h after induction is an increase in the level of activity of a protein kinase that is precipitated by antisera against Rous sarcoma virus-derived pp60^src and that phosphorylates tyrosine in the precipitated IgG. Immunoprecipitation using a preimmune serum did not yield any corresponding kinase activity. The antigenic relationship between the Hydractinia protein and vertebrate pp60^c-src"' was demonstrated by applying an immune competition assay.     

3D nuclear organization of telomeres in the Hodgkin cell lines U-HO1 and U-HO1-PTPN1: PTPN1 expression prevents the formation of very short telomeres including "t-stumps"

Background  

In cancer cells the three-dimensional (3D) telomere organization of interphase nuclei into a telomeric disk is heavily distorted and aggregates are found. In Hodgkin's lymphoma quantitative FISH (3D Q-FISH) reveals a major impact of nuclear telomere dynamics during the transition form mononuclear Hodgkin (H) to diagnostic multinuclear Reed-Sternberg (RS) cells. In vitro and in vivo formation of RS-cells is associated with the increase of very short telomeres including "t-stumps", telomere loss, telomeric aggregate formation and the generation of "ghost nuclei".