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51.
ISOLDA LUNA‐VEGA J. DANIEL TEJERO‐DÍEZ RAÚL CONTRERAS‐MEDINA MICHAEL HEADS GERARDO RIVAS 《Biological journal of the Linnean Society. Linnean Society of London》2012,106(4):940-955
We analyzed the geographical and elevational distributions of two Polypodium complexes from Mexico and Central America. Distribution data of nine species of the Polypodium colpodes complex and the Polypodium plesiosorum complex were obtained from almost 1500 herbarium specimens, field collections in Mexico and Costa Rica, and literature studies. The presence of each species was recorded for each Mesoamerican country, in 1° × 1° grid‐cells and biogeographical provinces. The rarity of species was also evaluated. Although the two complexes show extensive overlap, the P. colpodes complex is distributed mainly along the Pacific versant of Mexico and Central America, whereas the P. plesiosorum complex occurs mainly along the Atlantic versant. Those biogeographical provinces with maximum species diversity are Chiapas (seven species), Sierra Madre del Sur (six species), and the Trans‐Mexican Volcanic belt (six species). Grid‐cells with more species are located mainly in the mountains of central‐southern Mexico and northern Central America. Richness does not decrease or increase with latitude. Elevation distributions showed that most Polypodium species are concentrated in the montane interval and three species groups were recognized based on elevational preferences. Polypodium colpodes and P. plesiosorum are the most widely distributed species, whereas Polypodium castaneum and Polypodium flagellare are the only two species that possess the three attributes of rarity (narrow geographical distribution, high habitat specificity, and scarce local populations). Polypodium species of both complexes are present mainly in the montane regions of the study area and show some degree of geographical sympatry, especially in southern Mexico and northern Central America. This overlapping is explained by the elevation tolerance within montane systems and because most species inhabit three or more vegetation types. The distributional patterns of these complexes coincided with the three regional highlands of Mesoamerica, which are separated from each other by the Isthmus of Tehuantepec and by the lowlands of Nicaragua. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ?? , ??–??. 相似文献
52.
53.
Forster BP Ellis RP Thomas WT Newton AC Tuberosa R This D el-Enein RA Bahri MH Ben Salem M 《Journal of experimental botany》2000,51(342):19-27
This article represents some current thinking and objectives in the use of molecular markers to abiotic stress tolerance. Barley has been chosen for study as it is an important crop species, as well as a model for genetic and physiological studies. It is an important crop and, because of its well-studied genetics and physiology, is an excellent candidate in which to devise more efficient breeding methods. Abiotic stress work on cultivated gene pools of small grain cereals frequently shows that adaptive and developmental genes are strongly associated with responses. Developmental genes have strong pleiotropic effects on a number of performance traits, not just abiotic stresses. One concern is that much of the genetic variation for improving abiotic stress tolerance has been lost during domestication, selection and modern breeding, leaving pleiotropic effects of the selected genes for development and adaptation. Such genes are critical in matching cultivars to their target agronomic environment, and since there is little leverage in changing these, other sources of variation may be required. In barley, and many other crops, greater variation to abiotic stresses exists in primitive landraces and related wild species gene pools. Wild barley, Hordeum spontaneum C. Koch is the progenitor of cultivated barley, Hordeum vulgare L. and is easily hybridized to H. vulgare. Genetic fingerprinting of H. spontaneum has revealed genetic marker associations with site-of-origin ecogeographic factors and also experimentally imposed stresses. Genotypes and collection sites have been identified which show the desired variation for particular stresses. Doubled haploid and other segregating populations, including landrace derivatives have been used to map genetically the loci involved. These data can be used in molecular breeding approaches to improve the drought tolerance of barley. One strategy involves screening for genetic markers and physiological traits for drought tolerance, and the associated problem of drought relief-induced mildew susceptibility in naturally droughted fields of North Africa. 相似文献
54.
Olga Obrezanova Andreas Arnell Ramón Gómez de la Cuesta Maud E Berthelot Thomas RA Gallagher Jesús Zurdo Yvette Stallwood 《MABS-AUSTIN》2015,7(2):352-363
Aggregation is a common problem affecting biopharmaceutical development that can have a significant effect on the quality of the product, as well as the safety to patients, particularly because of the increased risk of immune reactions. Here, we describe a new high-throughput screening algorithm developed to classify antibody molecules based on their propensity to aggregate. The tool, constructed and validated on experimental aggregation data for over 500 antibodies, is able to discern molecules with a high aggregation propensity as defined by experimental criteria relevant to bioprocessing and manufacturing of these molecules. Furthermore, we show how this tool can be combined with other computational approaches during early drug development to select molecules with reduced risk of aggregation and optimal developability properties. 相似文献
55.
Protein phosphatase 2A (PP2A) is a heterotrimeric complex comprising a catalytic, scaffolding, and regulatory subunit. The regulatory subunits are essential for substrate specificity and localization of the complex and are classified into B/B55, B'', and B” non-related families in higher plants. In Arabidopsis thaliana, the close paralogs B''η, B''θ, B''γ, and B''ζ were further classified into a subfamily of B'' called B''η. Here we present results that consolidate the evidence for a role of the B''η subfamily in regulation of innate immunity, energy metabolism and flowering time. Proliferation of the virulent Pseudomonas syringae in B''θ knockout mutant decreased in comparison with wild type plants. Additionally, B''θ knockout plants were delayed in flowering, and this phenotype was supported by high expression of FLC (FLOWERING LOCUS C). B''ζ knockout seedlings showed growth retardation on sucrose-free medium, indicating a role for B''ζ in energy metabolism. This work provides insight into functions of the B''η subfamily members, highlighting their regulation of shared physiological traits while localizing to distinct cellular compartments. 相似文献
56.
A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database
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mtcPTM is an online repository of human and mouse phosphosites in which data are hierarchically organized to preserve biologically
relevant experimental information, thus allowing straightforward comparisons of phosphorylation patterns found under different
conditions. The database also contains the largest available collection of atomic models of phosphorylatable proteins. Detailed
analysis of this structural dataset reveals that phosphorylation sites are found in a heterogeneous range of structural and
sequence contexts. mtcPTM is available on the web . 相似文献
57.
Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated 总被引:2,自引:0,他引:2
Using the large subunit of RuBisCo (rbcL) sequences from cyanobacteria,
proteobacteria, and diverse groups of algae and green plants, we evaluated
the plastid relationship between haptophytes and heterokont algae. The rbcL
sequences were determined from three taxa of heterokont algae
(Bumilleriopsis filiformis, Pelagomonas calceolata, and Pseudopedinella
elastica) and added to 25 published sequences to obtain a data set
comprising 1,434 unambiguously aligned sites (approximately 98% of the
total rbcL gene). Higher levels of mutational saturation in third codon
positions were observed by plotting the pairwise substitutions with and
without corrections for multiple substitutions at the same site for first
and second codon positions only and for third positions only. In accordance
with this finding phylogeny reconstructions were completed by omitting
third codon positions, thus using 956 bp in weighted-parsimony and
maximum-likelihood analyses. The midpoint-rooted phylogenies showed two
major clusters, one containing cyanobacteria, glaucocystophytes, a
phototrophic euglenoid, chlorophytes, and embryophytes (the green lineage),
the other containing proteobacteria, haptophytes, red algae, a cryptophyte,
and heterokont algae (the non-green lineage). In the nongreen lineage, the
haptophytes formed a sister group to the clade containing heterokont algae,
red algae, and the cryptophyte Guillardia theta. This branching pattern was
well supported in terms of bootstrap values in weighted- parsimony and
maximum-likelihood analyses (100% and 92%, respectively). However, the
phylogenetic relationship among red algae, heterokonts, and a cryptophyte
taxon was not especially well resolved. A four- cluster analysis was
performed to further explore the statistical significance of the
relationship between proteobacteria, red algae (including and excluding
Guillardia theta), haptophytes, and heterokont algae. This test strongly
favored the hypothesis that the heterokonts and red algae are more closely
related to each other than either is to proteobacteria or haptophytes.
Hence, this molecular study based on a plastid-encoded gene provides
additional evidence for a distant relationship between haptophytes and the
heterokont algae. It suggests an evolutionary scenario in which the
ancestor of the haptophyte lineage engulfed a phototrophic eukaryote and,
more recently, the heterokont lineage became phototrophic by engulfing a
red alga.
相似文献
58.
In temperate zones, the potential grain yield of wheat has increased during the twentieth century owing to progressive increases in the harvest index of new varieties, which are principally associated with reduction in plant stature. Crop biomass has not increased substantially. In contrast, the potential grain yield of maize in the USA has increased owing to progressive increases in biomass, principally associated with selection for grain yield at higher population density. Harvest index was already around 0.5 for recommended varieties in 1930, and has not increased significantly since. However, for both crops, the harvest index of a given variety has proved to be a highly‐heritable character, except under severe stress. Less is known about the physiology of tropical maize. This paper reviews evidence from Mexico and Malawi that tropical maize can respond to selection for reduced stature following the same pattern as temperate wheat, but, under other circumstances, the magnitude of harvest index is not highly heritable, varying inconsistently with season, management and environment. It is proposed that these differences arise out of the unique vulnerability of the grain‐setting process around flowering. The plasticity of harvest index under long, favourable conditions, however, remains to be explained, although it is probably also related to the events around grain setting. Nevertheless, to the subsistence farmer, higher harvest index may not be a high priority in crop improvement, because of the need for large quantities of high‐quality stover. 相似文献
59.
TOMÁ HERBEN FRANTIEK KRAHULEC VRA HADINCOVÁ MARCELA KOVÁOVÁ HANA SKÁLOVÁ 《Plant Species Biology》1994,9(3):183-189
Abstract Festuca rubra forms tillers in two different ways: extravaginally and intravaginally. Demography of these two tiller types was observed in seventeen selected tussocks of Festuca rubra s.s. over four growing seasons. Extravaginal tillers were bigger at birth and on the average produced twice as many daughter tillers per tiller. In general, the natality and mortality of extravaginal tillers were less regular than that of intravaginal tillers. Overall tillering rate per tiller was correlated with the density of the surrounding vegetation; mortality, natality and tiller life span were not. High density of the surrounding vegetation did not result in increased formation of extravaginal tillers. The proportion of the extravaginal tillers was not correlated with the density of the F. rubra tussocks. There is no evidence for foraging by extravaginal tillers, but they do act as founders of small clusters of tillers. 相似文献
60.
Distribution and conservation of mobile elements in the genus Drosophila 总被引:13,自引:1,他引:12
Essentially nothing is known of the origin, mode of transmission, and
evolution of mobile elements within the genus Drosophila. To better
understand the evolutionary history of these mobile elements, we examined
the distribution and conservation of homologues to the P, I, gypsy, copia,
and F elements in 34 Drosophila species from three subgenera. Probes
specific for each element were prepared from D. melanogaster and hybridized
to genomic DNA. Filters were washed under conditions of increasing
stringency to estimate the similarity between D. melanogaster sequences and
their homologues in other species. The I element homologues show the most
limited distribution of all elements tested, being restricted to the
melanogaster species group. The P elements are found in many members of the
subgenus Sophophora but, with the notable exception of D. nasuta, are not
found in the other two subgenera. Copia-, gypsy-, and F-element homologues
are widespread in the genus, but their similarity to the D. melanogaster
probe differs markedly between species. The distribution of copia and P
elements and the conservation of the gypsy and P elements is inconsistent
with a model that postulates a single ancient origin for each type of
element followed by mating-dependent transmission. The data can be
explained by horizontal transmission of mobile elements between
reproductively isolated species.
相似文献