Assessment of the contribution of climate change and human activities to desertification in Northern Kordofan-Province,Sudan using net primary productivity as an indicator

Using net primary productivity (NPP) as an indicator to desertification driving factor and expansions is one of the importance tools in the assessment of the contribution of climate change and human activity in desertification. In this study we used three types of net primary productivity; the actual NPP, Potential NPP and HNPP (human appropriation of NPP) to discriminate the relative role of climate change and human activities in desertification from 2000 to 2008 in Northern Kordofan province-Sudan. The results showed, 63.75% of the study area experienced desertification expansion. Within which, 67.32% was induced by Human activities compared with 32.03% caused by climate change and 0.65% caused by a combination of the two factors. By contrast, climate change is the dominant factor of desertification reversion, 2.3% of desertification reversion caused by human activities compared with 97.7% induced by climate change and there isn’t interaction between climate change and human activities in reversion area. The largest area of expansion and reversion occurred in northeast and western parts of the study area respectively. We developed two propositions in the study area. First, the desertification expansion was induced by human activities, whereas desertification reversion was induced by climate change as typified in north south part, central part and western part. Second, both desertification expansion and reversion was induced by climate change as typified in northeast part of study area.     

Cytophysiological impacts of Metosulam herbicide on Vicia faba plants

The hazardous potential of the Metosulam herbicide, particularly the cytogenetic and physiological effects on Vicia faba cv Assuit 25 plants has been studied. The results showed that the mitotic index (MI) decreased and chromosomal aberrations frequency increased by increasing of the concentration of herbicide and prolonging the duration of treatment. In the roots treated with highest concentration used (1 × 10^?5 %) for 24 h, complete inhibition of cell division was observed. The chromosomal anomalies include chromosomal bridges and breaks that are regarded were indicative of a mutagenic potential of the herbicide. Seedling growth (fresh and dry weight) adversely affected as the duration and concentration of Metosulam herbicide increased. Soluble sugars, soluble proteins, total free amino acids and photosynthetic pigment content decreased significantly in root, stem and leaves of Vicia faba with increasing both the herbicide concentration and treatment duration. In contrast, proline content was highly accumulated, especially at the highest concentration (10^?4 %) and the longest duration used (24 h). The results of antioxidant enzymes reveal that while the peroxidase activity decreased by increasing the concentration of herbicide and duration, the activities of catalase and ascorbate peroxidase increased.     

The gp27-like Hub of VgrG Serves as Adaptor to Promote Hcp Tube Assembly

Contractile injection systems are multiprotein complexes that use a spring-like mechanism to deliver effectors into target cells. In addition to using a conserved mechanism, these complexes share a common core known as the tail. The tail comprises an inner tube tipped by a spike, wrapped by a contractile sheath, and assembled onto a baseplate. Here, using the type VI secretion system (T6SS) as a model of contractile injection systems, we provide molecular details on the interaction between the inner tube and the spike. Reconstitution into the Escherichia coli heterologous host in the absence of other T6SS components and in vitro experiments demonstrated that the Hcp tube component and the VgrG spike interact directly. VgrG deletion studies coupled to functional assays showed that the N-terminal domain of VgrG is sufficient to interact with Hcp, to initiate proper Hcp tube polymerization, and to promote sheath dynamics and Hcp release. The interaction interface between Hcp and VgrG was then mapped using docking simulations, mutagenesis, and cysteine-mediated cross-links. Based on these results, we propose a model in which the VgrG base serves as adaptor to recruit the first Hcp hexamer and initiates inner tube polymerization.     

The Type VI Secretion TssEFGK-VgrG Phage-Like Baseplate Is Recruited to the TssJLM Membrane Complex via Multiple Contacts and Serves As Assembly Platform for Tail Tube/Sheath Polymerization

The Type VI secretion system (T6SS) is a widespread weapon dedicated to the delivery of toxin proteins into eukaryotic and prokaryotic cells. The 13 T6SS subunits assemble a cytoplasmic contractile structure anchored to the cell envelope by a membrane-spanning complex. This structure is evolutionarily, structurally and functionally related to the tail of contractile bacteriophages. In bacteriophages, the tail assembles onto a protein complex, referred to as the baseplate, that not only serves as a platform during assembly of the tube and sheath, but also triggers the contraction of the sheath. Although progress has been made in understanding T6SS assembly and function, the composition of the T6SS baseplate remains mostly unknown. Here, we report that six T6SS proteins–TssA, TssE, TssF, TssG, TssK and VgrG–are required for proper assembly of the T6SS tail tube, and a complex between VgrG, TssE,-F and-G could be isolated. In addition, we demonstrate that TssF and TssG share limited sequence homologies with known phage components, and we report the interaction network between these subunits and other baseplate and tail components. In agreement with the baseplate being the assembly platform for the tail, fluorescence microscopy analyses of functional GFP-TssF and TssK-GFP fusion proteins show that these proteins assemble stable and static clusters on which the sheath polymerizes. Finally, we show that recruitment of the baseplate to the apparatus requires initial positioning of the membrane complex and contacts between TssG and the inner membrane TssM protein.     

Spatial analysis of rangeland's vegetation intensity as related to selected physical soil variables over ABQAIQ municipality of Saudi Arabia

Through most of the natural rangelands of Saudi Arabia, overgrazing, sand drifting, and off-road vehicles driving are almost the major contributing factors that lead to vegetation damage and land degradation in natural landscapes. The current study aimed at examining the dynamic nature of Abqaiq rangelands' vegetation, generating a vegetation intensity map, and investigating possible impacts caused by the spatial variability of obtained soil texture, sand content (%), and the derived available water capacity (DAW capacity (%)) on the intensity distribution of vegetation cover. Ordinal-nominal correlation type and spatial autocorrelation processes were adopted throughout the study to analyze the spatial correspondences as well as the interrelated patterns of the given variables. The resultant correlation between vegetation and soil texture (ordinal versus nominal variables) has yielded a significant (p-value < 0.001) relevancies, where, silt loam texture class, in particular, has proven to have the most correlated values to the most intensive vegetation habitats, where 5%, 35%, and 28% of the silt loam class were occupied by 80%, 60%, and 40% of vegetation intensities, respectively. Whereas, for the continuous variables, correlation outcomes have achieved a substantial negative spatial autocorrelation concerning vegetation intensity and sand content percentage, revealing a total absence of green biomass over the sandy soils. Additionally, vegetation intensity versus DAW capacity percentage significantly yielded a positive autocorrelation, revealing a high clustering of green biomass cover that associates with high clustering of high-water capacity soils. The autocorrelation strength identifier (Morn's I), produced an approximate value of 0.3 with a pseudo p-value of 0.001, for both relationships. The findings of this study would help researchers and relative authorities to grasp the reasons, consequences and behaviors of rangeland flora, considering Abqaiq's area as an example.     

Aflatoxins in peanut butter in Khartoum State,Sudan

Forty-three peanut butter samples from Khartoum State, Sudan, were analyzed for aflatoxins (AFs, AFB₁ + AFB₂ + AFG₁ + AFG₂) using high performance liquid chromatography (HPLC) with fluorescence detection after extraction with methanol:water (8:1, v/v) and clean-up using chloroform. All samples were contaminated with AFs, with total AF levels ranging between 26.7 and 853 μg/kg, and a mean total AF level of 287 ± 200.5 μg/kg. The highest concentrations were found for AFB₁, (28 positive samples, maximum 534 μg/kg), while AFG₁ was most frequently detected (43 positive samples, maximum 401 μg/kg). AFB₂ (42 positive samples, maximum 3.2 μg/kg) and AFG₂ (4 positive samples, maximum 30 μg/kg) were also present in these samples. The mean AF contamination levels found in this study exceeded by far all international regulations concerning maximum levels for this group of toxins. From the data, it is concluded that the levels of AF contamination in peanut butter from the Kartoum area are quite alarming, and may pose serious health hazards to consumers. Therefore, an intervention strategy to manage AF in peanut butter is urgently needed.     

The potential benefits of nicaraven to protect against radiation-induced injury in hematopoietic stem/progenitor cells with relative low dose exposures

Nicaraven, a hydroxyl radical-specific scavenger has been demonstrated to attenuate radiation injury in hematopoietic stem cells with 5 Gy γ-ray exposures. We explored the effect and related mechanisms of nicaraven for protecting radiation injury induced by sequential exposures to a relatively lower dose γ-ray. C57BL/6 mice were given nicaraven or placebo within 30 min before exposure to 50 mGy γ-ray daily for 30 days in sequences (cumulative dose of 1.5 Gy). Mice were victimized 24 h after the last radiation exposure, and the number, function and oxidative stress of hematopoietic stem cells were quantitatively estimated. We also compared the gene expression in these purified stem cells from mice received nicaraven and placebo treatment. Nicaraven increased the number of c-kit⁺ stem/progenitor cells in bone marrow and peripheral blood, with a recovery rate around 60–90% of age-matched non-irradiated healthy mice. The potency of colony forming from hematopoietic stem/progenitor cells as indicator of function was completely protected with nicaraven treatment. Furthermore, nicaraven treatment changed the expression of many genes associated to DNA repair, inflammatory response, and immunomodulation in c-kit⁺ stem/progenitor cells. Nicaraven effectively protected against damages of hematopoietic stem/progenitor cells induced by sequential exposures to a relatively low dose radiation, via complex mechanisms.     

Architecture and assembly of the Type VI secretion system

The Type VI secretion system (T6SS) delivers protein effectors to diverse cell types including prokaryotic and eukaryotic cells, therefore it participates in inter-bacterial competition and pathogenesis. The T6SS is constituted of an envelope-spanning complex anchoring a cytoplasmic tubular edifice. This tubular structure is evolutionarily, functionally and structurally related to the tail of contractile phages. It is composed of an inner tube tipped by a spike complex, and engulfed within a sheath-like structure. This structure assembles onto a platform called “baseplate” that is connected to the membrane sub-complex. The T6SS functions as a nano-crossbow: upon contraction of the sheath, the inner tube is propelled towards the target cell, allowing effector delivery. This review focuses on the architecture and biogenesis of this fascinating secretion machine, highlighting recent advances regarding the assembly of the membrane or tail complexes. This article is part of a Special Issue entitled: Protein trafficking and secretion in bacteria. Guest Editors: Anastassios Economou and Ross Dalbey.     

Effect of Feeding Palm Oil By-Products Based Diets on Total Bacteria,Cellulolytic Bacteria and Methanogenic Archaea in the Rumen of Goats

Rumen microorganisms are responsible for digestion and utilization of dietary feeds by host ruminants. Unconventional feed resources could be used as alternatives in tropical areas where feed resources are insufficient in terms of quality and quantity. The objective of the present experiment was to evaluate the effect of diets based on palm oil (PO), decanter cake (DC) or palm kernel cake (PKC) on rumen total bacteria, selected cellulolytic bacteria, and methanogenic archaea. Four diets: control diet (CD), decanter cake diet (DCD), palm kernel cake diet (PKCD) and CD plus 5% PO diet (CPOD) were fed to rumen cannulated goats and rumen samples were collected at the start of the experimental diets (day 0) and on days 4, 6, 8, 12, 18, 24 and 30 post dietary treatments. Feeding DCD and PKCD resulted in significantly higher (P<0.05) DNA copy number of total bacteria, Fibrobacter succinogenes, Ruminococcus flavefeciens, and Ruminococcus albus. Rumen methanogenic archaea was significantly lower (P<0.05) in goats fed PKCD and CPOD and the trend showed a severe reduction on days 4 and 6 post experimental diets. In conclusion, results indicated that feeding DCD and PKC increased the populations of cellulolytic bacteria and decreased the density of methanogenic archaea in the rumen of goats.