Cyclic Nucleotide-dependent Protein Kinases Target ARHGAP17 and ARHGEF6 Complexes in Platelets

Endothelial cells release prostacyclin (PGI₂) and nitric oxide (NO) to inhibit platelet functions. PGI₂ and NO effects are mediated by cyclic nucleotides, cAMP- and cGMP-dependent protein kinases (PKA, PKG), and largely unknown PKA and PKG substrate proteins. The small G-protein Rac1 plays a key role in platelets and was suggested to be a target of cyclic nucleotide signaling. We confirm that PKA and PKG activation reduces Rac1-GTP levels. Screening for potential mediators of this effect resulted in the identification of the Rac1-specific GTPase-activating protein ARHGAP17 and the guanine nucleotide exchange factor ARHGEF6 as new PKA and PKG substrates in platelets. We mapped the PKA/PKG phosphorylation sites to serine 702 on ARHGAP17 using Phos-tag gels and to serine 684 on ARHGEF6. We show that ARHGAP17 binds to the actin-regulating CIP4 protein in platelets and that Ser-702 phosphorylation interferes with this interaction. Reduced CIP4 binding results in enhanced inhibition of cell migration by ARHGAP17. Furthermore, we show that ARHGEF6 is constitutively linked to GIT1, a GAP of Arf family small G proteins, and that ARHGEF6 phosphorylation enables binding of the 14-3-3 adaptor protein to the ARHGEF6/GIT1 complex. PKA and PKG induced rearrangement of ARHGAP17- and ARHGEF6-associated protein complexes might contribute to Rac1 regulation and platelet inhibition.     

Grapheme-colour synaesthesia improves detection of embedded shapes,but without pre-attentive ‘pop-out’ of synaesthetic colour

For people with synaesthesia letters and numbers may evoke experiences of colour. It has been previously demonstrated that these synaesthetes may be better at detecting a triangle made of 2s among a background of 5s if they perceive 5 and 2 as having different synaesthetic colours. However, other studies using this task (or tasks based on the same principle) have failed to replicate the effect or have suggested alternative explanations of the effect. In this study, we repeat the original study on a larger group of synaesthetes (n = 36) and include, for the first time, an assessment of their self-reported colour experiences. We show that synaesthetes do have a general advantage over controls on this task. However, many synaesthetes report no colour experiences at all during the task. Synaesthetes who do report colour typically experience around one third of the graphemes in the display as coloured. This is more consistent with theories of synaesthesia in which spatial attention needs to be deployed to graphemes for conscious colour experiences to emerge than the interpretation based on ‘pop-out’.     

Automated Quantification of Hematopoietic Cell – Stromal Cell Interactions in Histological Images of Undecalcified Bone

Confocal microscopy is the method of choice for the analysis of localization of multiple cell types within complex tissues such as the bone marrow. However, the analysis and quantification of cellular localization is difficult, as in many cases it relies on manual counting, thus bearing the risk of introducing a rater-dependent bias and reducing interrater reliability. Moreover, it is often difficult to judge whether the co-localization between two cells results from random positioning, especially when cell types differ strongly in the frequency of their occurrence. Here, a method for unbiased quantification of cellular co-localization in the bone marrow is introduced. The protocol describes the sample preparation used to obtain histological sections of whole murine long bones including the bone marrow, as well as the staining protocol and the acquisition of high-resolution images. An analysis workflow spanning from the recognition of hematopoietic and non-hematopoietic cell types in 2-dimensional (2D) bone marrow images to the quantification of the direct contacts between those cells is presented. This also includes a neighborhood analysis, to obtain information about the cellular microenvironment surrounding a certain cell type. In order to evaluate whether co-localization of two cell types is the mere result of random cell positioning or reflects preferential associations between the cells, a simulation tool which is suitable for testing this hypothesis in the case of hematopoietic as well as stromal cells, is used. This approach is not limited to the bone marrow, and can be extended to other tissues to permit reproducible, quantitative analysis of histological data.     

Identifying calpain substrates in intact S2 cells of Drosophila

Calpains are cysteine proteases involved in a number of physiological and pathological processes, yet our knowledge of substrates cleaved in vivo, in intact cells, is scarce. In this work we made an attempt to develop a technique for finding calpain substrates in intact Drosophila Schneider S2 cells. The procedure consists in comparative 2D gelelectrophoresis: three identical samples were treated in different ways: A (control, no addition), B, activated (Ca²⁺ and ionomycin added), C, inactivated (additions as in B + specific calpain inhibitor). 2D gel pattern were analyzed by densitometry. Spots showing density relation A > B << C were identified by mass spectroscopy. In a typical run, 11 candidate substrates were recognized; out of these, four were randomly selected: all four were verified to be calpain substrates, by digestion of the recombinant protein with recombinant calpain.     

The chick somitogenesis oscillator is arrested before all paraxial mesoderm is segmented into somites

Background  

Somitogenesis is the earliest sign of segmentation in the developing vertebrate embryo. This process starts very early, soon after gastrulation has initiated and proceeds in an anterior-to-posterior direction during body axis elongation. It is widely accepted that somitogenesis is controlled by a molecular oscillator with the same periodicity as somite formation. This periodic mechanism is repeated a specific number of times until the embryo acquires a defined specie-specific final number of somites at the end of the process of axis elongation. This final number of somites varies widely between vertebrate species. How termination of the process of somitogenesis is determined is still unknown.     

Breeding colonies as information centers: a reappraisal of information-based hypotheses using the producer--scrounger game

One of the most cited hypotheses for the evolutionary advantagesof colonial breeding proposes that colonies serve as a placeof information exchange about the location of food—theinformation center hypothesis. Despite its popularity, thehypothesis generated considerable controversy over its predictionsand role in the evolution of colonial breeding. As a consequence,the hypothesis still lingers on, despite numerous apparent falsifications from both observational and experimental approaches.The controversy has three roots: the unclear causal directionbetween coloniality and information center, the unrecognizeddistinction between colonial breeding and colonial roosting,and the use of an implicit group selectionist argument. Herewe try to clarify this controversy by applying an entirely individual selection-based approach, the producer-scrounger game, to theinformation center hypothesis. Furthermore, we show how otherinformation-based alternatives of the original informationcenter hypothesis (e.g., local enhancement and recruitmentcenter hypotheses) can be included in a common framework. Ourmodel predicts that individuals relying on information transfer at the colony should be rather common in nature. This predictionis essentially unaltered by the inclusion of either local enhancementor recruitment center. On the other hand, the frequency ofleading unknowledgeable individuals (the most accepted signof information center) is expected to be very low. The modelindicates that tests of information-based hypotheses shouldfocus on the expected relative frequency of food-searching flights rather than the frequency of leading.