Multilocus phylogeography of a holarctic duck: colonization of north america from eurasia by gadwall (Anas strepera)

More than 100 species of birds have Holarctic distributions extending across Eurasia and North America, and many of them likely achieved these distributions by recently colonizing one continent from the other. Mitochondrial DNA (mtDNA) and five nuclear introns were sequenced to test the direction and timing of colonization for a Holarctic duck, the gadwall (Anas strepera). Three lines of evidence suggest gadwalls colonized North America from Eurasia. First, New World (NW) gadwalls had fewer alleles at every locus and 61% of the allelic richness found in Old World (OW) gadwalls. Second, NW gadwalls had lower mtDNA allelic richness than other NW ducks. Third, coalescent analysis suggested that less than 5% of the ancestral population contributed to NW gadwalls at the time of divergence. Gadwalls likely colonized North America during the Late Pleistocene (approximately 81,000 years ago), but the confidence interval on that estimate was large (8500-450,000 years ago). Intercontinental gene flow and selection also likely contributed to genetic diversity in gadwalls. This study illustrates the use of multiple loci and coalescent analyses for critically testing a priori hypotheses regarding dispersal and colonization and provides an independent datapoint supporting an OW to NW bias in the direction of colonization.     

High resolution approach to the native state ensemble kinetics and thermodynamics

Many biologically interesting functions such as allosteric switching or protein-ligand binding are determined by the kinetics and mechanisms of transitions between various conformational substates of the native basin of globular proteins. To advance our understanding of these processes, we constructed a two-dimensional free energy surface (FES) of the native basin of a small globular protein, Trp-cage. The corresponding order parameters were defined using two native substructures of Trp-cage. These calculations were based on extensive explicit water all-atom molecular dynamics simulations. Using the obtained two-dimensional FES, we studied the transition kinetics between two Trp-cage conformations, finding that switching process shows a borderline behavior between diffusive and weakly-activated dynamics. The transition is well-characterized kinetically as a biexponential process. We also introduced a new one-dimensional reaction coordinate for the conformational transition, finding reasonable qualitative agreement with the two-dimensional kinetics results. We investigated the distribution of all the 38 native nuclear magnetic resonance structures on the obtained FES, analyzing interactions that stabilize specific low-energy conformations. Finally, we constructed a FES for the same system but with simple dielectric model of water instead of explicit water, finding that the results were surprisingly similar in a small region centered on the native conformations. The dissimilarities between the explicit and implicit model on the larger-scale point to the important role of water in mediating interactions between amino acid residues.     

The Agrobacterium rhizogenes rolC-gene-induced somatic embryogenesis and shoot organogenesis in Panax ginseng transformed calluses

Expression of the Agrobacterium rhizogenes rolC gene in Panax ginseng callus cells results in formation of tumors that are capable to form roots. The selection of non-root forming tumor clusters yielded the embryogenic 2c3 callus line, which formed somatic embryos and shoots independently of external growth factors. Although the 2c3 somatic embryos developed through a typical embryogenesis process, they terminated prematurely and repeatedly formed adventitious shoot meristems and embryo-like structures. A part of the shoots and somatic embryos formed enlarged and fasciated meristems. This is the first indication of the rolC gene embryogenic effect and, to our knowledge, the first indication that a single gene of non-plant origin can induce somatic embryogenesis in plants.     

Calcium-dependent mechanism of somatic embryogenesis in oncogene rolC expressing cell cultures of Panax ginseng

It was shown earlier, that ginseng embryogenic cell culture 2c3 was obtained as a result of callus cells transformation with the Agrobacterium rhizogenes rolC oncogene. In the present report we determine that inhibitors of Ca2+-channels (LaCl3, verapamil, niflumic acid) certainly lowered the quantity of somatic embryos in the 2c3 cell culture. This is the evidence of the influence of calcium-dependent signal system on plant embryogenesis. Protein kinases inhibitors W7 and H7 also caused the lowering of somatic embryos quantity in the 2c3 cell culture. We analysed changes of CDPK genes expression in embryogenic 2c3 cell culture. Total expression decreased 1.2-1.5 times comparing with the control callus culture. CDPK expression in the 2c3 embryogenic culture lowered by the inhibition of expression of the gene subfamilies PgCDPK1 (PgCDPK1a and PgCDPK1b) and PgCDPK3 (PgCDPK3a). At the same time, expression of PgCDPK2 gene subfamily (PgCDPK2b and PgCDPK2d) was increased. We suppose that genes of PgCDPK2 subfamily might be responsible for the embryogenesis initiation in the 2c3 ginseng cell culture. It was shown for the first time that the rolC gene and the process of embryogenesis could change expression of particular forms of CDPK genes.     

Calcium-dependent mechanism of somatic embryogenesis in Panax ginseng cell cultures expressing the rolC oncogene

The Panax ginseng 2c3 embryogenic cell culture was earlier obtained by callus cell transformation with Agrobacterium rhizogenes rolC. Calcium channel blockers (LaCl₃, verapamil, and niflumic acid) reduced the production of somatic embryos in the 2c3 culture, implicating the Ca²⁺ signaling system in plant somatic embryogenesis. The protein kinase inhibitors W7 and H7 also decreased the yield of somatic embryos in the 2c3 culture. The total CDPK expression in the 2c3 culture was 1.2-to 1.5-fold lower than in a control callus culture as a result of a silencing of the genes belonging to the PgCDPK1 (PgCDPK1a and PgCDPK1b) and PgCDPK3 (PgCDPK3a) subfamilies. Expression of the PgCDPK2 subfamily genes (PgCDPK2b and PgCDPK2d) was increased. It was assumed that some genes of the PgCDPK1, PgCDPK2, and PgCDPK3 subfamilies were responsible for generation of embryogenic cells in the 2c3 culture. For the first time, rolC expression and embryogenesis were associated with changes in the expression of certain CDPK genes.     

The Role of the Sympathoadrenomedullary System in the Formation of Pilot’s Adaptation to Flight Loads

The objective of this study was to evaluate the functions of the sympathoadrenomedullary system and the related psychophysiological reactions of pilots, depending on flying hours on a highly maneuverable aircraft. The study involved 78 volunteer pilots (41 high-maneuverability pilots and 37 bomber and transport aviation pilots). A set of methods was chosen with the possibility of their use according to the principle of comprehensive evaluation of the body functional state under flight loads taken into account. Our results indicate that highly maneuverable aircraft piloting induces a significant activation of the sympathoadrenomedullary system in pilots, compared to bombing and transport aircrafts. This is particularly common to young pilots with the total flying time of less than 1000 h. It has been recorded that changes in adaptation to the effect of flight factors on the body develop with age and flight experience.     

Comparison of heart rate in embryonic,young and adult Achatina fulica

We have studied the embryonic heart in the gastropod Achatina fulica using eggs soon after their deposition. We also followed the development of organs, with the main emphasis on the heart and its physiology. The embryos were examined at different stages by carefully removing egg shell until hatching. In this context the heart rate (HR) was analysed in embryonic snails and compared with that of young (from hatching) and adults. The HR of embryos dissected from newly deposited eggs was irregular, with a mean frequency of 0.42?±?0.14?Hz. The heartbeat during the ontogeny was more rhythmic and HR increased to 0.82?±?0.12?Hz. The intersystolic intervals (ISI) in real time showed a Gaussian distribution for all animals. The peak ISI from Gaussian fit closely matched the cumulative probability for corresponding data. Although the HR increased after hatching, comparisons yield a weak correlation (R?=?0.56?±?0.27) with the total body weight of embryonic, young and adult snails.     

A new species of the conodont genus <Emphasis Type="Italic">Polygnathus</Emphasis> from the Tournaisian of the northern Urals,Chernyshev Ridge and Pai-Khoi

A new conodont species, Polygnathus postvogesi sp. nov., from the Tournaisian deepwater deposits of the northern Urals, southeastern part of the Chernyshev Ridge, and central Pai-Khoi is described. The new species continue the phylogenetic lineage of the Late Devonian polygnathid P. marginvolutus Gedik, P. vogesi Ziegler.     

Range expansion of rotan <Emphasis Type="Italic">Perccottus glenii</Emphasis>, sunbleak <Emphasis Type="Italic">Leucaspius delineatus</Emphasis>, and bleak <Emphasis Type="Italic">Alburnus alburnus</Emphasis> in the Ob River basin

The ranges of three alien fish species (rotan Perccottus glenii, sunbleak Leucaspius delineatus, and bleak Alburnus alburnus) in the Ob River basin, West Siberia, have expanded. Our data prove the expansion of rotan and sunbleak ranges to the north. In particular, for the first time, populations of rotan are reported from the lower section of the Ob. We also present new data about range expansion of the studied fish species southward. All three species have probably reached the southern limits of their possible distribution in the Upper Ob system, entering the potamon/rhithron transition zone, because the species under study prefer lowland waters. The spatio-temporal dynamics of their expansion reveals the role of the Ob River as the main invasion corridor, enhancing their distribution mostly in meridional direction. In the system of the Upper Ob, rotan and sunbleak were found by us in isolated ponds and lakes, as well as in floodplain systems. This is in agreement with the concept of two invasion vectors: the translocation of fish by humans between water bodies and self-distribution along the river courses.     

RAPD–PCR Analysis of Genetic Diversity in the Manchurian Pheasant

The genetic diversity of a local population of the Manchurian pheasant Phasianus colchicus pallasi was studied using RAPD–PCR. Based on the DNA patterns obtained in PCR with five arbitrary decanucleotide primers, we assessed genetic polymorphism of this population, estimated genetic distances between individuals, and constructed an NJ phylogenetic tree, and an UPGMA dendrogram of genetic similarity. The population was shown to exhibit high average genetic polymorphism (P = 79.4%) and genetic distances (D = 0.267). Possible reasons for the high genetic diversity of this local population are discussed.