不同病理分期肺腺癌患者血清代谢组学研究

肺癌是当今世界最常见的恶性肿瘤之一,其新发率和死亡率多年来都居于各类癌症之首,其中85%的肺癌都是非小细胞癌,而腺癌又是最常见的非小细胞癌。肺癌的高隐匿性是造成其高死亡率的最主要原因,因此为肺癌的早期诊断和病理分期寻求高效可靠的方法是十分必要的。代谢组学揭示了小分子代谢物的一系列变化,反映了生命活动的最终状态,因此也能直接反映疾病不同发展阶段的病理生理变化。本研究利用核磁共振氢谱(1H-NMR),对在我院就诊的27例不同病理分期的肺腺癌患者和13例健康志愿者进行了血清代谢物分析,运用正交偏最小二乘判别分析(OPLS-DA)对1H-NMR数据进行建模,单变量统计分析对模型进行评价。结果表明肺腺癌患者组的血清中有14种代谢物出现明显差异,其中丙酮酸、丙氨酸、NAC1、乳酸、GPC和甘氨酸比起对照组来有显著上升,而葡萄糖、谷氨酰胺、亮氨酸、异亮氨酸、缬氨酸、丙酮、乙酰乙酸和苏氨酸则显著下降。而在不同分期肺腺癌患者间进行比较后发现,异亮氨酸、乙酰乙酸、NAC1和乳酸的变化与肺腺癌的发展有相关性,可能是肺腺癌早期诊断和分期的潜在生物标志物。     

Metagenomic insights into the alteration of soil N-cycling-related microbiome and functions under long-term conversion of cropland to Miscanthus

Miscanthus spp. show excellent application prospects due to its bioenergy potential and multiple ecological services. Annual N export with biomass harvest from Miscanthus, even without fertilizer supplement, do not reduce soil N levels. The question arises regarding how Miscanthus can maintain stable soil N levels. Metagenomic strategies were used to reveal soil N-cycling-related microbiome and their functional contributions to processes of soil N-cycling based on the comparison among the bare land, cropland, 10-year Miscanthus × giganteus, and 15-year Miscanthus sacchariflorus fields. The results showed that, after long-term cropland-to-Miscanthus conversion (LCMC), 16 of 21 bacterial phyla and all the archaeal phyla exhibited significant changes. Soil microbial denitrification and nitrification functions were significantly weakened, and N fixation (NF) was significantly enhanced. The biosynthesis of amino acids, especially alanine, aspartate, and glutamate metabolism, in soil N-cycling-related microbiome was dramatically promoted. The genus Anaeromyxobacter contributed largely to the NF process after LCMC. Variations in the soil available potassium, available N, organic C, and total N contents drove a functional shift of soil microbiome from cropland to Miscanthus pattern. We conclude that Miscanthus can recruit Anaeromyxobacter communities to enhance NF benefiting its biomass sustainability and soil N balance.     

高糖通过诱导自噬障碍促进心肌细胞H9c2凋亡

目的探讨自噬对高糖（HG）诱导的心肌细胞H9c2凋亡的影响。 方法MTT法检测H9c2细胞活力;hoechst33258染色法检测凋亡细胞;Western Blot检测H9c2细胞促凋亡蛋白Bax和自噬相关蛋白（Beclin-1和P62）的表达。各组的OD值和蛋白条带灰度值均采用析因设计的方差分析,各组间差异用单因素ANOVA分析。 结果HG能诱导H9c2细胞活力降低：12、24、48 mmol/L的HG细胞活力分别为Control组（100%）的[（79.5±2.23）%]（t = 3.143,P = 0.043）、[（54.6±3.08）%]（t = 12.425,P = 0.000）和[（37.2±2.59）%]（t = 13.761,P = 0.000）;与Control组（100%）比较,甘露醇等渗对照组的细胞活力值为[（101.0±1.27）%]（t = 0.012,P = 0.094）。HG诱导H9c2细胞hoechst33258阳性细胞增加,且能诱导促凋亡蛋白Bax表达增加：与Control组比较,12、24、48 mmol/L的HG处理组凋亡蛋白Bax/β-actin灰度值分别为（1.29±0.25,t = 2.32,P = 0.045）、（1.42±0.23,t = 10.247,P = 0.000）和（1.81±0.29,t = 16.324,P = 0.000）。HG诱导自噬障碍：与Control组比较,自噬相关蛋白Beclin-1/β-actin灰度值分别为（0.82±0.16,t = 4.243,P = 0.032）、（0.78±0.19,t = 11.341,P = 0.000）和（0.62±0.11,t = 13.455,P = 0.000）,P62蛋白/β-actin蛋白灰度值分别为（1.29±0.25,t = 4.442,P = 0.014）、（1.42±0.23,t = 13.341,P = 0.000）和（1.81±0.29,t = 15.851,P = 0.000）。自噬诱导剂雷帕霉素可逆转HG诱导的hoechst33258阳性细胞增加,且逆转HG诱导的Bax表达升高：与control组比较,HG组、HG和雷帕霉素共处理组、雷帕霉素组的Bax/β-actin灰度值分别为（1.51±0.31,t = 14.342,P = 0.000）、（1.42±0.23,t = 9.621,P = 0.004）和（1.81±0.12,t = 0.172,P = 0.124）。 结论HG可促进心肌细胞H9c2凋亡,且能诱导自噬障碍,自噬诱导剂的运用逆转了HG对H9c2细胞的凋亡作用,表明自噬障碍是HG诱导H9c2细胞凋亡的重要机制。     

透明颤菌血红蛋白基因的研究与应用

总结了近 15年来透明颤菌血红蛋白的研究结果 ,包括它的分布、结构、功能、合成等分子生物学以及在基因工程中的应用。透明颤菌的血红蛋白是 2 0世纪 70年代被发现的 ,由于它具有结合氧的特性 ,可使透明颤菌这一专性好氧的革兰氏阴性菌在贫氧环境中生长。透明颤菌血红蛋白是同型二聚体形式的可溶性血红蛋白分子 ,每分子透明颤菌血红蛋白由两个分子量为 15 775的亚基和两个b型血红素组成。透明颤菌血红蛋白的功能是为透明颤菌强大的呼吸膜增加氧的流量。完整的有功能的血红蛋白由血红蛋白亚基和血红素组成 ,血红蛋白亚基由基因vgb编码 ,血红素由生化代谢合成。透明颤菌血红蛋白基因在野生透明颤菌中是以单拷贝的方式随染色体一起复制表达的。透明颤菌血红蛋白基因已经被克隆和测序。同时也讨论了将透明颤菌血红蛋白基因整合到异源宿主菌中增加重组蛋白产量和发酵产量方面的研究。最后 ,概述了当透明颤菌血红蛋白在植物中表达时 ,转基因植物表现出生长增加以及代谢物产量发生变化的情况。     

Structures of sortase B from Staphylococcus aureus and Bacillus anthracis reveal catalytic amino acid triad in the active site

Surface proteins attached by sortases to the cell wall envelope of bacterial pathogens play important roles during infection. Sorting and attachment of these proteins is directed by C-terminal signals. Sortase B of S. aureus recognizes a motif NPQTN, cleaves the polypeptide after the Thr residue, and attaches the protein to pentaglycine cross-bridges. Sortase B of B. anthracis is thought to recognize the NPKTG motif, and attaches surface proteins to m-diaminopimelic acid cross-bridges. We have determined crystal structure of sortase B from B. anthracis and S. aureus at 1.6 and 2.0 A resolutions, respectively. These structures show a beta-barrel fold with alpha-helical elements on its outside, a structure thus far exclusive to the sortase family. A putative active site located on the edge of the beta-barrel is comprised of a Cys-His-Asp catalytic triad and presumably faces the bacterial cell surface. A putative binding site for the sorting signal is located nearby.