Cross-trait prediction accuracy of summary statistics in genome-wide association studies

In the era of big data, univariate models have widely been used as a workhorse tool for quickly producing marginal estimators; and this is true even when in a high-dimensional dense setting, in which many features are “true,” but weak signals. Genome-wide association studies (GWAS) epitomize this type of setting. Although the GWAS marginal estimator is popular, it has long been criticized for ignoring the correlation structure of genetic variants (i.e., the linkage disequilibrium [LD] pattern). In this paper, we study the effects of LD pattern on the GWAS marginal estimator and investigate whether or not additionally accounting for the LD can improve the prediction accuracy of complex traits. We consider a general high-dimensional dense setting for GWAS and study a class of ridge-type estimators, including the popular marginal estimator and the best linear unbiased prediction (BLUP) estimator as two special cases. We show that the performance of GWAS marginal estimator depends on the LD pattern through the first three moments of its eigenvalue distribution. Furthermore, we uncover that the relative performance of GWAS marginal and BLUP estimators highly depends on the ratio of GWAS sample size over the number of genetic variants. Particularly, our finding reveals that the marginal estimator can easily become near-optimal within this class when the sample size is relatively small, even though it ignores the LD pattern. On the other hand, BLUP estimator has substantially better performance than the marginal estimator as the sample size increases toward the number of genetic variants, which is typically in millions. Therefore, adjusting for the LD (such as in the BLUP) is most needed when GWAS sample size is large. We illustrate the importance of our results by using the simulated data and real GWAS.     

Multikink quantile regression for longitudinal data with application to progesterone data analysis

Motivated by investigating the relationship between progesterone and the days in a menstrual cycle in a longitudinal study, we propose a multikink quantile regression model for longitudinal data analysis. It relaxes the linearity condition and assumes different regression forms in different regions of the domain of the threshold covariate. In this paper, we first propose a multikink quantile regression for longitudinal data. Two estimation procedures are proposed to estimate the regression coefficients and the kink points locations: one is a computationally efficient profile estimator under the working independence framework while the other one considers the within-subject correlations by using the unbiased generalized estimation equation approach. The selection consistency of the number of kink points and the asymptotic normality of two proposed estimators are established. Second, we construct a rank score test based on partial subgradients for the existence of the kink effect in longitudinal studies. Both the null distribution and the local alternative distribution of the test statistic have been derived. Simulation studies show that the proposed methods have excellent finite sample performance. In the application to the longitudinal progesterone data, we identify two kink points in the progesterone curves over different quantiles and observe that the progesterone level remains stable before the day of ovulation, then increases quickly in 5 to 6 days after ovulation and then changes to stable again or drops slightly.     

催产时鳝卵磷酸酶活性的变化及其与排卵的关系

本实验采用Gomori组织化学法和磷酸苯二钠法,分别检测黄鳝卵ALP、ACP的细胞定位和活性变化。结果表明,催产后72h,ALP活性显著高于临近注射时(Oh),催产后48h和96h(p<0.05);临产前(催产后96h),ACP活性极显著高于试验组其它各时程(p<0.01)。提示ALP和ACP活性增强与卵母细胞成熟、排放有直接关系。本研究为探索排卵机制提供资料。     

湖北竹溪植被的基本特征

竹溪县现有种子植物１２７科４８３属８６３种。地理成分复杂,联系广泛,以温带成分占主导地位,占非世界分布属的６４．８３％,热带分布属则占２９．３９％,木本植物占种子植物总数的４２．５９％,主要植补类型计７个植补型组,１０个植被型,４９个联系。地处竹溪中南部的云雾溪是目前亚热带区域保存较为完整,具有多方面保护价值的综合区,建议辟为自然保护区。     

杨树拟茎点菌溃疡病的研究

本病系我国杨树新发生的一种病害。病原菌的分生孢子有2种形状,无色透明、单胞,呈纺缍形孢子大小为1.64—2.74×9.59—13.7μm。线形孢子顶端弯钩状大小为1.37—1.78×15—27.4μm。病原菌适宜生长的培养基为PDA、麦芽粉、豆饼粉培养基;温度为25—32℃和pH6—10。本病于4月下旬发病,5月中下旬分生孢子成熟,6月中下旬为分生孢子飞散高峰期。经室内采用多菌灵、甲基托布津、福美砷的200倍液浸泡插穗30、60、90分钟处理均有药害,采用100—200倍液浸泡10分钟无药害,对病害有防效。造林地幼树可采用上述药剂的100倍液进行刮破病斑涂抹,防效可达87.5％。     

蝮蛇抗栓酶治疗小儿脑炎致急性偏瘫血中6—K—PGF1α,TXB2的变化

应用蝮蛇抗栓酶治疗小儿脑炎致急性偏瘫共25例。沿疗前后检测血中的6-K-PGF_1x及 TXB_2.结果表明:治疗后血中 6-酮-前列腺素 F_1x 明显增高,血栓素 B_2明显降低。推测蝮蛇抗栓酶之所以具有去纤、溶栓、扩血管等作用,可能与血中前列腺素、血栓素 B_2水平变化有关。     

油茶籽饼抗真菌活性成分的研究

从油茶籽饼中已经分离得到一种新的抗真菌活性成分油茶皂甙A,被鉴定为齐墩果烷型的五环三萜皂甙,它的mp为258～260℃,[α]_D~(27)=-20°(C=1％,80％EtOH),体外试验研究表明油茶皂甙A有较强的抑制真菌作用,对红包毛癣菌、石膏样癣菌、断发癣菌、黄癣菌、紫色癣菌、絮状表皮癣菌的MIC为0.125～1.000mg/ml,对白色念珠菌的MIC为0.0625～0.2500mg/ml。     

胀果甘草化学成分的研究（Ⅲ）

继前文工作,本文报道从胀果甘草(Glycyrrhiza inflata Bat)根及根茎用95％乙醇渗滤后的提取部分中获得的另外五个化合物的结构鉴定。经理化性质及波谱分析,分别鉴定为胡萝卜甙(Daucosterol)、甘草查尔酮甲(Licochalcone A)、β-谷甾醇(β-Sitosterol),异芒柄花甙(Isoononin)和4＇,7一二羟基黄酮(4＇,7-Dihydroxy-flavone)。其中胡萝卜甙和异芒柄花甙为首次从该植物中获得。药理实验表明,甘草查尔酮甲对H_2O_2诱异的溶血有极好的抑制作用(97.3％),但甘草甙在三个体外氧化体系中都没有明显的活性。     

免疫反应动力学的几个数学模型

免疫系统对抗原刺激的应答过程非常复杂,由抗原刺激导致抗体产生的现象,可借助数学模型的研究获得有意义的结果。本文讨论有关抗体产生与免疫反应的动力学的问题,介绍有关的数学模型,并根据近斯免疫学研究的进展分析了若干模型。     

鼠兔核质杂交胚胎早期发育的研究

细胞核移植技术已被证明是研究发育中核质相互关系的非常重要的手段之一,电融合技术也是近十年发展起来的新型细胞融合技术。本实验运用这两项技术,进行了鼠、兔目间核质杂交实验,小鼠8-细胞核在激活的兔去核卵母细胞中,发生了染色体超前凝聚及核膨胀,融合卵移植到小鼠输卵管4.5天后,冲洗出,有5.4%的重构卵发育到囊胚期,通过染色体检查,囊胚细胞中均为小鼠染色体,其中一个囊胚为正常小鼠核型(2 n=40,XX)。通过本实验,我们认为:鼠兔远缘核质杂交胚胎的早期发育是可能的。