Ontogenetic trait variation and metacommunity effects influence species relative abundances during tree community assembly

Predicting species abundance is one of the most fundamental pursuits of ecology. Combining the information encoded in functional traits and metacommunities provides a new perspective to predict the abundance of species in communities. We applied a community assembly via trait selection model to predict quadrat-scale species abundances using functional trait variation on ontogenetic stages and metacommunity information for over 490 plant species in a subtropical forest and a lowland tropical forest in Yunnan, China. The relative importance of trait-based selection, mass effects, and stochasticity in shaping local species abundances is evaluated using different null models. We found both mass effects and trait selection contribute to local abundance patterns. Trait selection was detectable at all studied spatial scales (0.04–1 ha), with its strength stronger at larger scales and in the subtropical forest. In contrast, the importance of stochasticity decreased with spatial scale. A significant mass effect of the metacommunity was observed at small spatial scales. Our results indicate that tree community assembly is primarily driven by ontogenetic traits and metacommunity effects. Our findings also demonstrate that including ontogenetic trait variation into predictive frameworks allows ecologists to infer ecological mechanisms operating in community assembly at the individual level.     

长江中游地区农业生态效率空间关联网络演化及驱动因素

厘清农业生态效率空间关联的网络特征及驱动因素对践行绿色发展理念、实现区域协同治理具有重要意义。基于2001-2019年长江中游地区38个地级市的面板数据,采用超效率至强有效前沿最近距离(MINDS)模型测度各地级市的农业生态效率,运用引力模型对长江中游地区农业生态效率的空间关联关系进行识别,进而利用社会网络分析方法和二次指派程序(QAP)方法揭示其网络结构演化特征和驱动因素。研究表明:(1)长江中游地区农业生态效率的空间关联关系表现出复杂的网络结构形态,空间关联网络具有高通达性且等级结构趋于松散,但网络稳定性却趋于下降;(2)武汉市和长沙市在空间关联网络中居核心地位,既扮演中心行动者角色又兼具"中介"和"桥梁"功能;岳阳市、黄石市等省际边界地级市在网络中则扮演边缘行动者角色;(3)空间关联网络核心-边缘结构由"十五"时期的"大聚集、小分散"演变为"十三五"时期的"大分散、小聚集",核心区由中部聚集转变为向四周发散;(4)地理空间的邻接、地区农业产业地位、财政支出、经济发展水平的相近以及交通运输水平的差异均有助于空间关联网络的形成。     

海珠国家湿地公园浮游植物群落结构时空变化

浮游植物是湿地生态系统的重要组成成分,其数量及群落结构变化会对湿地生态系统的结构和功能产生重要影响。为了解海珠国家湿地公园浮游植物群落结构及时空动态变化特征,于2017年冬、2018年夏两季分别进行了调查。结果表明:海珠国家湿地公园共检到浮游植物171种,隶属7门64属,其中绿藻门、硅藻门和蓝藻门种类分别占总种类的44%、26%和13%;广州平裂藻(Merismopedia cantonensis)和细小平裂藻(Merismopedia minima)在两季均为优势种,冬季啮蚀隐藻(Cryptomonas erosa)也较多;浮游植物群落结构、丰度与生物多样性指数具有明显季节变化,冬季硅藻和绿藻占优,分别占藻类总丰度的32%和29%;夏季蓝藻占绝对优势,占68%;夏季浮游植物平均丰度达(25.58±18.47)×10⁶cells·L^-1,约为冬季的3倍; Shannon物种多样性指数和Pielou均匀度指数冬季分别为4.38和0.77,夏季分别为2.92和0.51;从空间上看,海珠湖浮游植物种类、多样性指数均较低,而丰度较高;塘涌和西江涌硅藻...     

黔西北次生林优势树种叶片-凋落物-土壤连续体有机质碳稳定同位素特征

稳定性碳同位素自然丰度(δ13C)能够揭示生态系统长时间尺度的有机碳动态变化,阐明生态系统功能的变化特征。以黔西北次生林14个优势树种为研究对象,测定叶片、凋落物以及根区土壤有机碳含量和δ13C值,分析不同层次碳含量和δ13C丰度之间的相关性。结果表明:14个优势树种叶片碳含量为404.67—487.14 g/kg,总体为针叶树种较高、常绿灌木较低;δ13C值为-31.2‰—-27.1‰,随生活型的变化规律不明显。凋落物碳含量为414.62—561.31 g/kg,与叶片碳含量的变化规律较为一致;δ13C值为-31.5‰—-27.3‰,随树种生活型的变化特征也不明显。根区土壤碳含量为10.02—91.59 g/kg,δ13C值为-26.8‰—-22.5‰,碳含量以光皮桦、银白杨等落叶乔木较高。叶片、凋落物和根区土壤3个层次的碳含量与δ13C丰度之间均呈不显著相关,不同层次的δ13C丰度之间和碳含量之间均为正相关。研究结果有助于反映森林生态系统碳循环过程的关键信息,为森林植被恢复提供理论依据。     

Ungulate bocaparvovirus 4 and rodent bocavirus are different genotypes of the same species of virus

Bocaviruses are associated with many human infectious diseases, such as respiratory tract infections, gastroenteritis, and hepatitis. Rats are known to be reservoirs of bocaviruses, including rodent bocavirus and rat bocavirus. Recently, ungulate bocaparvovirus 4, a known porcine bocavirus, has also been found in rats. Thus, investigating bocaviruses in rats is important for determining the origin of the viruses and preventing and controlling their transmission. To the best of our knowledge, no study to date has investigated bocaviruses in the livers of rats. In this report, a total of 624 rats were trapped in southern China between 2014 and 2017. Liver and serum samples from rats were tested for the prevalence of bocaviruses using PCR. Sequences related to ungulate bocaparvovirus 4 and rodent bocavirus were detected in both liver and serum samples. Interestingly, the prevalence of ungulate bocaparvovirus 4 (reference strain:KJ622366.1) was higher than that of rodent bocavirus (reference strain:KY927868.1) in both liver (2.24% and 0.64%, respectively) and serum samples (2.19% and 0.44%, respectively). The NS1 regions of ungulate bocaparvovirus 4 and rodent bocavirus related sequences displayed over 84% and 88% identity at the nucleic acid and amino acid levels, respectively. Furthermore, these sequences had similar genomic structure, genomic features, and codon usage bias, and shared a common ancestor. These viruses also displayed greater adaptability to rats than pigs. Our results suggested that ungulate bocaparvovirus 4 and rodent bocavirus may originate from rats and may be different genotypes of the same bocavirus species.     

人松弛素原样蛋白H2在大肠杆菌中的表达、分离纯化及鉴定

利用聚合酶链式反应方法 ,从含有人前松弛素原cDNA基因的质粒 pMALp2X-hRLXH2上得到人松弛素原H2的编码基因 ,亚克隆到温度诱导型原核表达载体pBV2 2 0上 ,转化大肠杆菌DH5α细胞。经 4 2℃温度诱导 ,获得了目的基因的高效表达。目的蛋白质以包含体的形式存在于大肠杆菌细胞中。菌体经过超声波破碎 ,包含体裂解 ,蛋白质的体外变性还原 ,复性 ,SephadexG 75凝胶过滤层析 ,反相快速蛋白质液相层析等一系列分离纯化过程 ,得到了高纯度的重组Met 人松弛素原样蛋白H2 ,得率约为 2～ 3mg/L。对纯化的目的蛋白质进行了SDS PAGE电泳纯度分析 ,氨基酸组成分析 ,通过基质辅助激光解吸电离飞行时间质谱法测得目的蛋白质的分子量为 183 90 .4 (理论计算值为 183 92 .3 )。     

TaqMan-MGB荧光定量RT-PCR技术快速检测H5亚型禽流感病毒

建立以TaqMan-MGB荧光探针为特点的荧光定量RT-PCR方法,用于检测H5亚型禽流感病毒.针对H5亚型禽流感病毒血凝素(HA)基因保守区域设计特异性引物与TaqMan-MGB荧光探针,筛选并优化荧光定量RT-PCR反应体系与反应条件,用以提高方法的特异性、敏感性与准确性;并通过体外克隆技术建立病毒基因拷贝数进行定量分析.结果表明引物与探针的优化浓度分别640nmol/L和480nmol/L,体系具有良好的保守性和特异性,与其他呼吸道病毒均无交叉反应.方法检测灵敏度为100拷贝/反应,标准曲线线性范围为107～102拷贝/反应,从病毒核酸提取至检测完成仅需3h左右,操作简便,重现性好.本研究建立的TaqMan-MGB荧光定量PCR方法特异、敏感、快速,适合于临床实验室进行H5亚型禽流感病毒的快速定量检测.     

上海部分地区戊型肝炎病毒(HEV)基因型的分析

为了解戊型肝炎病毒(HEV)在上海部分地区流行的基因型,采用RT-nPCR的方法检验35例急性散发性戊型肝炎患者中HEV RNA,并对阳性产物进行克隆测序,然后对其基因型进行分析.结果显示在35例急性散发性戊型肝炎患者中PCR阳性为9例,测序证实8例为HEV的基因序列;其中1例为HEV 1型,7例为HEV 4型.提示在上海部分地区的急性散发性戊型肝炎中以HEV 4型感染为主.     

拉沙山黑白仰鼻猴食物中单宁含量的变化

叶食性灵长类食物选择受食物营养及单宁等次生代谢产物影响,为了探讨单宁对黑白仰鼻猴食物选择的影响,通过磷钼酸-钨酸钠 (F-D) 比色法测定了拉沙山黑白仰鼻猴群 (Rhinopithecus bieti) 2010年4月 - 2012年3月间的食用植物 (192种) 和非食用植物 (188种) 单宁含量。结果表明,黑白仰鼻群全年食用植物中单宁含量低于非食用植物;春季食用植物中单宁含量高于其他季节,而其他季节无差异;不同取食部位单宁由高到低依次为芽、花、叶、果和地衣;不同季节,不同取食部位单宁有差异,春季芽的单宁含量最高,夏秋季果实单宁含量最高,冬季叶单宁含量最高;不同月份,食物单宁也不同,3月食用植物中单宁最高 (8.36% ± 6.22%),2月最低 (1.28% ± 1.19%)。因此,黑白仰鼻猴根据环境食物种类和供给时空特征,可能采取了从高蛋白纤维比/高单宁到低蛋白纤维比/低单宁连续谱觅食策略。     

Litterfall Production Along Successional and Altitudinal Gradients of Subtropical Monsoon Evergreen Broadleaved Forests in Guangdong, China

Evaluation of litterfall production is important for understanding nutrient cycling, forest growth, successional pathways, and interactions with environmental variables in forest ecosystems. Litterfall was intensively studied during the period of 1982–2001 in two subtropical monsoon vegetation gradients in the Dinghushan Biosphere Reserve, Guangdong Province, China. The two gradients include: (1) a successional gradient composed of pine forest (PF), mixed pine and broadleaved forest (MF) and monsoon evergreen broadleaved forest (BF), and (2) an altitudinal gradient composed of Baiyunci ravine rain forest (BRF), Qingyunci ravine rain forest (QRF), BF and mountainous evergreen broadleaved forest (MMF). Mean annual litterfall production was 356, 861 and 849 g m⁻² for PF, MF and BF of the successional gradient, and 1016, 1061, 849 and 489 g m⁻² for BRF, QRF, BF and MMF of the altitudinal gradient, respectively. As expected, mean annual litterfall of the pioneer forest PF was the lowest, but rapidly increased over the observation period while those in other forests were relatively stable, confirming that forest litterfall production is closely related to successional stages and growth patterns. Leaf proportions of total litterfall in PF, MF, BF, BRF, QRF and MMF were 76.4%, 68.4%, 56.8%, 55.7%, 57.6% and 69.2%, respectively, which were consistent with the results from studies in other evergreen broadleaved forests. Our analysis on litterfall monthly distributions indicated that litterfall production was much higher during the period of April to September compared to other months for all studied forest types. Although there were significant impacts of some climate variables (maximum and effective temperatures) on litterfall production in some of the studied forests, the mechanisms of how climate factors (temperature and rainfall) interactively affect litterfall await further study.