白花蛇舌草醇提取物对乳腺癌T-47D细胞株生长的抑制作用

目的：观察白花蛇舌草醇提取物对乳腺癌细胞T-47D生长的影响。方法：采用平皿克隆形成实验、软琼脂集落形成实验和BrdUrd（溴脱氧尿苷）掺入实验,观察不同浓度的白花蛇舌草醇提取物（1.0μg/mL,3.0μg/mL,10μg/mL,30μg/mL,100μg/mL）对T-47D细胞锚定依赖性生长和软琼脂集落形成能力及核酸合成的抑制作用。结果：①随着白花蛇舌草醇提取物浓度的升高,对T-47D细胞的生长呈现明显抑制作用;②白花蛇舌草醇提取物可呈浓度依赖性抑制对数生长期T-47D细胞核酸合成。结论：白花蛇舌草醇提取物可能通过影响肿瘤细胞核酸合成而抑制T-47D细胞生长。     

重组腺伴随病毒载体表达人白细胞介素12的研究

白细胞介素12(IL-12)具有广谱抗肿瘤、抗感染的作用,是由两个亚单位40kD(p40)和35kD(p35)通过二硫键构成的杂合体,有可能通过分别表达亚单位的方式来表达有功能活性的IL-12.该实验尝试利用重组腺伴随病毒(rAAV)载体进行人IL-12(hIL-12)双亚基共表达,将hIL-12的两个亚基分别克隆到AAV载体质粒pSNAV中,构建成pSNAV-IL12-p35和pSNAV-IL12-p40质粒,经转染、G418筛选后建立了rAAV载体细胞株.采用先前建立的rAAV的生产方法,获得了rAAV-IL12-p35和rAAV-IL12-p40,在体外将两种rAAV共同感染BHK-21细胞,48h后收集细胞培养上清进行免疫学和生物学活性检测.经ELISA检测,产生的hIL-12 p70的含量为10.185pg/ml;在体外促进IFN-γ分泌实验中,加入hIL-12的PBMC分泌的IFN-γ含量为37.2mg/ml.实验结果说明:采用两个AAV载体分别表达亚单位的方法可以表达具有功能活性的hIL-12,为IL-12的基因治疗提供了一条新的途径.     

人组织激肽释放酶成熟蛋白在大肠杆菌中的高效表达

将编码人组织激肽释放酶成熟蛋白的基因片段扩增并分别克隆到原核表达载体pET2 8(b)及分泌型表达载体pET2 0 (b)中 ,使其C端融合 6×HisTag序列 .转化不同受体菌 ,IPTG诱导表达后利用SDS PAGE、免疫印记等方法对重组蛋白进行分析 .在 6株基因工程菌株中 ,均表达出分子量约30kD的激肽释放酶融合蛋白 ,其中激肽释放酶在pET2 8载体中的表达水平高于pET2 0载体 .pET2 8和pET2 0载体表达的重组激肽释放酶蛋白分别占菌体总蛋白约 2 6 %和 10 % .Western印迹分析表明 ,目的蛋白可与抗人血清KK单克隆抗体发生特异性反应 .未经纯化的激肽释放酶融合蛋白具有一定的水解苯甲酰精胺酸乙酯 (BAEE)的能力 .在大肠杆菌中获得了人组织激肽释放酶的高效表达 ,表达产物具有免疫原性和生物活力 ,这为研究其生物功能和开发基因工程药物奠定基础     

RBRDetector: Improved prediction of binding residues on RNA‐binding protein structures using complementary feature‐ and template‐based strategies

Computational prediction of RNA‐binding residues is helpful in uncovering the mechanisms underlying protein‐RNA interactions. Traditional algorithms individually applied feature‐ or template‐based prediction strategy to recognize these crucial residues, which could restrict their predictive power. To improve RNA‐binding residue prediction, herein we propose the first integrative algorithm termed RBRDetector (RNA‐Binding Residue Detector) by combining these two strategies. We developed a feature‐based approach that is an ensemble learning predictor comprising multiple structure‐based classifiers, in which well‐defined evolutionary and structural features in conjunction with sequential or structural microenvironment were used as the inputs of support vector machines. Meanwhile, we constructed a template‐based predictor to recognize the putative RNA‐binding regions by structurally aligning the query protein to the RNA‐binding proteins with known structures. The final RBRDetector algorithm is an ingenious fusion of our feature‐ and template‐based approaches based on a piecewise function. By validating our predictors with diverse types of structural data, including bound and unbound structures, native and simulated structures, and protein structures binding to different RNA functional groups, we consistently demonstrated that RBRDetector not only had clear advantages over its component methods, but also significantly outperformed the current state‐of‐the‐art algorithms. Nevertheless, the major limitation of our algorithm is that it performed relatively well on DNA‐binding proteins and thus incorrectly predicted the DNA‐binding regions as RNA‐binding interfaces. Finally, we implemented the RBRDetector algorithm as a user‐friendly web server, which is freely accessible at http://ibi.hzau.edu.cn/rbrdetector . Proteins 2014; 82:2455–2471. © 2014 Wiley Periodicals, Inc.     

F43Y及I354M,L358F定点突变对植酸酶热稳定性及酶活性的改善

对重组酵母PPNPm8的植酸酶phyAm基因进行PCR介导的定点突变,即将植酸酶43位的苯丙氨酸替换为酪氨酸(F43Y),将其354、358位的异亮氨酸、亮氨酸分别替换为甲硫氨酸和苯丙氨酸(I354M,L358F),得到了2个突变体PPNPm-1(F43Y)及PPNPm-2(I354M,L358F).含突变基因的重组表达载体pPIC9kphyAm-1,pPIC9kphyAm-2在毕赤酵母GS115中表达,对表达产物进行酶活性测定及热稳定性检测.结果表明:突变体PPNPm-1最适反应温度比未突变体PPNPm8上升了3℃,75℃处理10min,热稳定性提高15%,比活力提高11%;PPNPm-2最适反应温度未改变,热稳定性比PPNPm8仅提高3%,比活力降低6.5%.对突变前后的植酸酶空间结构进行比较预测,发现突变氨基酸Tyr43与空间位置相邻的Asn416之间形成氢键,增强了酶的热稳定性.     

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

Human blood plasma can be obtained relatively noninvasively and contains proteins from most, if not all, tissues of the body. Therefore, an extensive, quantitative catalog of plasma proteins is an important starting point for the discovery of disease biomarkers. In 2005, we showed that different proteomics measurements using different sample preparation and analysis techniques identify significantly different sets of proteins, and that a comprehensive plasma proteome can be compiled only by combining data from many different experiments. Applying advanced computational methods developed for the analysis and integration of very large and diverse data sets generated by tandem MS measurements of tryptic peptides, we have now compiled a high-confidence human plasma proteome reference set with well over twice the identified proteins of previous high-confidence sets. It includes a hierarchy of protein identifications at different levels of redundancy following a clearly defined scheme, which we propose as a standard that can be applied to any proteomics data set to facilitate cross-proteome analyses. Further, to aid in development of blood-based diagnostics using techniques such as selected reaction monitoring, we provide a rough estimate of protein concentrations using spectral counting. We identified 20,433 distinct peptides, from which we inferred a highly nonredundant set of 1929 protein sequences at a false discovery rate of 1%. We have made this resource available via PeptideAtlas, a large, multiorganism, publicly accessible compendium of peptides identified in tandem MS experiments conducted by laboratories around the world.     

凝血酶对大鼠星形胶质细胞组织因子活性表达的影响及其机制

目的：观察凝血酶对大鼠星形胶质细胞组织因子活性表达的影响及其机制。方法;培养Ｗｉｓｔａｒ乳鼠星形胶质细胞,细胞用抗神经胶质纤维酸性蛋白单克隆抗体确认。细胞冻融液组织因子活性检测采用一期血浆复地。结果：与对照组比较,凝血酶使星形胶质细胞组织因子表达明显增高（Ｐ〈０．０５）。当凝血酶与三氟吡啦嗪或Ｈ７联用时,它对呈形胶质细胞表达组织因子活性的刺激作用受到抑制。与凝血酶组比较,已呵可碱十凝血酶组星形胶质     

摄食对南方鲇耗氧和氨氮排泄的影响

采用流水式呼吸仪,在水温27.0±0.5℃条件下同时测定了南方鲇(Silurus meridionalisChen)摄食前后的耗氧率和排氨率。实验结果表明:摄食前标准耗氧率和标准排氨率分别为116.4±6.4mgO2/kg/h和6.9±1.4mgNH4 /kg/h。摄食后耗氧率和排氨率均呈现迅速上升,到达最大值后再缓慢下降,然后恢复到静止水平的变化趋势:最大值分别为358.8±11.4mgO2/kg/h和76.1±2.5mgNH4 /kg/h;最大值出现时间分别为10.8±1.4h和10.1±0.9h;摄食后耗氧率和排氨率发生改变的持续时间分别为36.0±2.3h和37.2±2.8h;耗氧总增量和排氨总增量分别为88.3±2.7mgO2和23.1±1.7mgNH4 。实验结果显示,鱼类排氨率在摄食后的变化过程与其耗氧率的特殊动力作用(SDA)具有类似的特征,表明二者在能量代谢机制上相互关联;南方鲇的SDA总耗能的79.4%由蛋白质分解代谢所提供。