ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling

Mutations in VPS13C cause early-onset, autosomal recessive Parkinson’s disease (PD). We have established that VPS13C encodes a lipid transfer protein localized to contact sites between the ER and late endosomes/lysosomes. In the current study, we demonstrate that depleting VPS13C in HeLa cells causes an accumulation of lysosomes with an altered lipid profile, including an accumulation of di-22:6-BMP, a biomarker of the PD-associated leucine-rich repeat kinase 2 (LRRK2) G2019S mutation. In addition, the DNA-sensing cGAS-STING pathway, which was recently implicated in PD pathogenesis, is activated in these cells. This activation results from a combination of elevated mitochondrial DNA in the cytosol and a defect in the degradation of activated STING, a lysosome-dependent process. These results suggest a link between ER-lysosome lipid transfer and innate immune activation in a model human cell line and place VPS13C in pathways relevant to PD pathogenesis.     

公共空间安全感研究：以上海城市街景感知为例

在文献基础上梳理了街道安全感影响因素,并采用上海样本检验了“街道眼”等西方街道安全理论。邀请30位学生和30位市民对上海5个不同发展时期社区的300张百度街景图片进行安全感评定。实验发现绿视率、管理程度、车道数等都对安全感起着显著作用,并分别建立了单双车道和多车道街道空间的安全感回归模型。其中发现绿视率（单双车道相关系数R=0.728,p<0.01;多车道相关系数R=0.471,p<0.01）、管理程度（单双车道相关系数R=0.766,p<0.01;多车道相关系数R=0.450,p<0.01）、车道数量因素（相关系数R=0.502,p<0.01）对安全感均有显著的积极作用,界面透明度（单双车道相关系数R=0.222,p<0.01）、独立自行车道（相关系数R=0.309,p<0.01）及设计美感（相关系数R=0.432,p<0.01）等因素在单双车道空间中具有积极影响,而助动车与自行车（单双车道相关系数R=-0.327,p<0.01;多车道相关系数R=-0.281,p<0.01）在对安全感知评价具有消极影响,机动车（单双车道相关系数R=0.251,p<0.01;多车道相关系数R=-0.327,p<0.01）在单双车道与多车道空间中呈现相反的作用。     

Cytoskeletal dynamics underlying collateral membrane protrusions induced by neurotrophins in cultured Xenopus embryonic neurons

The establishment and refinement of neuronal connections depend on dynamic modification of the morphology and physiology of developing axons in response to extrinsic factors. In embryonic cultures of Xenopus spinal neurons, acute application of brain-derived neurotrophic factor (BDNF) induced rapid collateral protrusion of filopodium-like microspikes and lamellipodia along the neurite processes, leading to a morphologic alternation of the neuron. Both types of membrane protrusions contained high concentrations of actin filaments and depended on the polymerization of the actin cytoskeleton. Immunofluorescent staining, however, revealed the presence of microtubules (MTs) in lamellipodia induced by BDNF. These MTs appeared to have arisen from debundling of MTs in the neurite shaft at the protrusion sites, splaying and extending in the rapidly protruding lamellipodia. Inhibition of microtubule polymerization by nocodazole largely abolished the formation of lamellipodia but not of microspikes. Taken together, our results suggest that collateral sprouting of microspikes and lamellipodia involve distinctly different cytoskeletal mechanisms. Although the actin cytoskeleton is solely responsible for microspike formation, cooperative efforts by microtubules and actin filaments are essential for lamellipodial protrusion in response to extrinsic factors.     

利用癌功能类从癌基因组突变谱中识别癌基因

从大规模癌样本基因突变扫查数据中识别癌基因具有重要的意义. 一些重要功能的改变对于癌的发生发展是必需的, 因此将它们定义为癌功能类, 并从GO(Gene Ontology)中选择一组显著富集已知癌基因的细致功能类来代表它们. 为了评价以癌相关功能类作为特征识别癌基因的效果, 将已知的蛋白激酶癌基因定义为阳性金标准, 而将其他的蛋白激酶基因定义为阴性金标准. 结果表明, 与利用选择压力作为特征的方法比较, 利用癌相关功能类作为特征的方法可以更有效地识别癌基因. 进一步结合癌相关功能类与基因非同义突变个数可以产生更可靠的预测结果. 最后, 将46个注释到癌相关功能类并且其非同义突变个数至少为3的蛋白激酶基因预测为癌基因, 预测精确率达到0.42.     

Exogenous maltose enhances Zebrafish immunity to levofloxacin-resistant Vibrio alginolyticus

Understanding the interplay between bacterial fitness, antibiotic resistance, host immunity and host metabolism could guide treatment and improve immunity against antibiotic-resistant pathogens. The acquisition of levofloxacin (Lev) resistance affects the fitness of Vibrio alginolyticus in vitro and in vivo. Lev-resistant (Lev-R) V. alginolyticus exhibits slow growth, reduced pathogenicity and greater resistance to killing by the host, Danio rerio (zebrafish), than Lev-sensitive (Lev-S) V. alginolyticus, suggesting that Lev-R V. alginolyticus triggers a weaker innate immune response in D. rerio than Lev-S V. alginolyticus. Differences were detected in the metabolome of D. rerio infected with Lev-S or Lev-R V. alginolyticus. Maltose, a crucial metabolite, is significantly downregulated in D. rerio infected with Lev-R V. alginolyticus, and exogenous maltose enhances the immune response of D. rerio to Lev-R V. alginolyticus, leading to better clearance of the infection. Furthermore, we demonstrate that exogenous maltose stimulates the host production of lysozyme and its binding to Lev-R V. alginolyticus, which depends on bacterial membrane potential. We suggest that exogenous exposure to crucial metabolites could be an effective strategy for treating and/or managing infections with antibiotic-resistant bacteria.     

Rhizobium qilianshanense sp. nov., a novel species isolated from root nodule of Oxytropis ochrocephala Bunge in China

During a study of the diversity and phylogeny of rhizobia isolated from root nodules of Oxytropis ochrocephala grown in the northwest of China, four strains were classified in the genus Rhizobium on the basis of their 16S rRNA gene sequences. These strains have identical 16S rRNA gene sequences, which showed a mean similarity of 94.4 % with the most closely related species, Rhizobium oryzae. Analysis of recA and glnA sequences showed that these strains have less than 88.1 and 88.7 % similarity with the defined species of Rhizobium, respectively. The genetic diversity revealed by ERIC-PCR fingerprinting indicated that the isolates correspond to different strains. Strain CCNWQLS01^T contains Q-10 as the predominant ubiquinone. The major fatty acids were identified as feature 8 (C18: 1ω7c and/or C18: 1ω6c; 67.2 %). Therefore, a novel species Rhizobium qilianshanense sp. nov. is proposed, and CCNWQLS01^T (= ACCC 05747^T = JCM 18337^T) is designated as the type strain.     

Design and construction of a preparative-scale dynamic field gradient focusing apparatus

A linear model is used to show that dynamic field gradient focusing (DFGF) can be scaled to preparative capacity, approximately O (10 mgs). This paper explains how the preparative-scale DFGF apparatus was designed and fabricated. Scaled-down experiments and mathematical modeling guided material selection and design changes during construction to increase the probability that the prototype preparative-scale DFGF apparatus would perform as intended. The finished prototype successfully focused bovine hemoglobin from an initial concentration of 6.82 to 15 mg/mL and allowed for 86% recovery of injected protein.