暹罗鳄食道结节病病原彭氏变形杆菌的分离与鉴定

【背景】2016年5月,厦门南顺鳄鱼园中的养殖暹罗鳄(Crocodylussiamensis)幼鳄暴发了一种之前未见报道的食道结节病,表现为鳄鱼不进食并伴有部分死亡。【目的】对患食道结节病的鳄鱼病料进行病原学鉴定,旨在探明病因,为该病的防治提供理论参考依据。【方法】对鳄鱼病灶处分离菌进行生理生化特征鉴定、16S rRNA基因序列分析、回接感染试验以及药敏试验。【结果】从病鳄食道、肝脏和血液病灶处各分离到一株优势细菌,综合菌株形态、生理生化特征以及16S rRNA基因序列分析的结果,判定3株分离菌均为彭氏变形杆菌(Proteus penneri)。由食道结节处分离的菌株2202经人工回接感染,证实彭氏变形杆菌为引起此次暹罗鳄发病死亡的致病原。3株分离菌对12种药物的耐药率均为33%,对恩诺沙星、复方新诺明、头孢噻肟、卡那霉素、四环素、强力霉素与萘啶酸共7种实验药物敏感,对利福平、青霉素G、红霉素和氯霉素耐药,而对链霉素则表现中介。【结论】彭氏变形杆菌与患病暹罗鳄的死亡有直接关系,该菌多为侵袭人类的条件致病菌,作为养殖鳄鱼的病原菌尚属首例。     

Design, expression, and characterization of a novel targeted plectasin against methicillin-resistant Staphylococcus aureus

A novel specifically targeted antimicrobial peptide (STAMP) that was especially effective against methicillin-resistant Staphylococcus aureus (MRSA) was designed by fusing the AgrD1 pheromone to the N-terminal end of plectasin. This STAMP was named Agplectasin, and its gene was synthesized and expressed in Pichia pastoris X-33 via pPICZαA. The highest amount of total secreted protein reached 1,285.5 mg/l at 108 h during the 120-h induction. The recombinant Agplectasin (rAgP) was purified by cation exchange chromatography and hydrophobic exchange chromatography; its yield reached 150 mg/l with 94 % purity. The rAgP exhibited strong bactericidal activity against S. aureus but not Staphylococcus epidermidis or other types of tested bacteria. A bactericidal kinetics assay showed that the rAgP killed over 99.9 % of tested S. aureus (ATCC 25923 and ATCC 43300) in both Mueller–Hinton medium and human blood within 10 h when treated with 4× minimal inhibitory concentration. The rAgP caused only approximately 1 % hemolysis of human blood cells, even when the concentration reached 512 μg/ml, making it potentially feasible as a clinical injection agent. In addition, it maintained a high activity over a wide range of pH values (2.0–10.0) and demonstrated a high thermal stability at 100 °C for 1 h. These results suggested that this STAMP has the potential to eliminate MRSA strains without disrupting the normal flora.     

In vitro intragenomic rearrangement of porcine circovirus type 2

We report here for the first time the genome sequence of a rearranged porcine circovirus type 2 (PCV2) strain, CH-IVT1, isolated from PCV2-infected PK-15 cells. The complete circular genome of the CH-IVT1 is 605 nucleotides (nt) in length. The finding will help us to understand the molecular evolution of PCV2 and the relationship between PCV2 and PCV-associated diseases.     

Mesenchymal stem cells modified with angiopoietin-1 improve remodeling in a rat model of acute myocardial infarction

We used human angiopoietin-1 (hAng1)-modified mesenchymal stem cells (MSCs) to treat acute myocardial infarction (AMI) in rats. The hAng1 gene was transfected into cultured rat MSCs using an adenoviral vector. Five million hAng-transfected MSCs (MSC(Ang1)) or green fluorescent protein transfected MSCs (MSC(GFP)) or PBS only (PBS group) were injected intramyocardially into the inbred Lewis rat hearts immediately after myocardial infarction. MSC(Ang1) survived in the infarcted myocardium, and expressed hAng1 at both mRNA and protein levels. The vascular density was higher in the MSC(Ang1) and MSC(GFP) groups than in the PBS group. The measurements of infarcted ventricular wall thickness, infarction area, and left ventricular diameter indicated that heart remodeling was inhibited and heart function was improved in both the MSC(Ang1) and MSC(GFP) groups. However, in contrast to the MSC(GFP) group, the MSC(Ang1) group showed enhanced angiogenesis and arteriogenesis (by 11-35%), infarction area was reduced by 30% and the left ventricular wall was 46% thicker (P<0.05). The results indicated that hAng1-modified MSCs improved heart function, followed by angiogenic effects in salvaging ischemic myocardium and reduced cardiac remodeling.     

Cryptic phenology in plants: Case studies,implications, and recommendations

Plant phenology—the timing of cyclic or recurrent biological events in plants—offers insight into the ecology, evolution, and seasonality of plant‐mediated ecosystem processes. Traditionally studied phenologies are readily apparent, such as flowering events, germination timing, and season‐initiating budbreak. However, a broad range of phenologies that are fundamental to the ecology and evolution of plants, and to global biogeochemical cycles and climate change predictions, have been neglected because they are “cryptic”—that is, hidden from view (e.g., root production) or difficult to distinguish and interpret based on common measurements at typical scales of examination (e.g., leaf turnover in evergreen forests). We illustrate how capturing cryptic phenology can advance scientific understanding with two case studies: wood phenology in a deciduous forest of the northeastern USA and leaf phenology in tropical evergreen forests of Amazonia. Drawing on these case studies and other literature, we argue that conceptualizing and characterizing cryptic plant phenology is needed for understanding and accurate prediction at many scales from organisms to ecosystems. We recommend avenues of empirical and modeling research to accelerate discovery of cryptic phenological patterns, to understand their causes and consequences, and to represent these processes in terrestrial biosphere models.     

杂交水稻及其“三系”线粒体DNA的AP—PCR指纹图谱

为了研究水稻（Ｏｒｙｚａ ｓａｔｉｖａ Ｌ．）细胞质雄性不育（ＣＭＳ）与线粒体基因组的关系,应用ＡＰ－ＰＣＲ 分析,用７ 个任意单引物对６ 种水稻品系线粒体ＤＮＡ 进行了扩增。水稻线粒体ＤＮＡ 的ＡＰ－ＰＣＲ 产物可分为三种类型：（１）所有供试品系均能扩增的片段,它们代表了线粒体ＤＮＡ 在进化上的保守性序列。有４ 个引物检测到这类片段。（２）２ 个以上水稻品系共同出现而在全部供试材料间存在差异的扩增片段,这类片段是检测水稻线粒体ＤＮＡ多态性的主要来源。（３）一种细胞质类型所特有的扩增片段,从引物Ｒ２ 和Ｖ５ 的扩增产物中发现了这类片段,它们可能与ＣＭＳ有关联。另外,ＷＡ型不育系珍汕９７Ａ 与其杂种之间在６ 个引物的扩增图谱上均存在不同程度的差异,说明两者的线粒体ＤＮＡ序列结构可能存在某种差别     

Surface Display of Human Serum Albumin on Bacillus subtilis Spores for Oral Administration

Human serum albumin (HSA) is the major protein component of human plasma. To date, HSA for clinical uses is mostly produced by fractionation of human whole blood, which is accompanied by a lot of limitations. To obtain long-term bioactive albumin, we used hsa as a foreign gene and constructed a recombinant plasmid pJS700-HSA which carries a recombinant gene cotC-hsa under the control of cotC promoter. Plasmid pJS700-HSA was transformed into Bacillus subtilis by double cross-over and an amylase inactivated mutant was produced. After induction of spore formation, western blot and fluorescence immunoassay were used to monitor HSA surface expression on spores. We estimated that HSA displayed on the spore accounted for 0.135 % of the total spore proteins and about 0.023 fg HSA were exposed on the surface of each spore. Oral administration to mice with spores displaying HSA implied that the recombinant spores may have potential ability to increase the serum albumin level in vivo due to the resistant characters of spores.     

九龙江河口浮游植物的时空变动及主要影响因素

于2009年春（5月）、夏（8月）、秋（11月）在九龙江河口水域进行了水文、化学和生物的生态完全示范区综合外业调查,研究了九龙江河口浮游植物的种类组成、密度分布、季节变化、空间差异及主要影响因素,并结合前期资料分析了年际变动。结果表明,九龙江河口的浮游植物共记录7个门类75属134种。主体是硅藻,绿藻次之,甲藻和蓝藻较少,黄藻检出率高,裸藻和金藻零星检出。种类组成的空间差异大,绿藻在河口内区淡水水域比硅藻更占优势, 中肋骨条藻（Skeletonema costatum）、短角弯角藻（Eucampia zodiacus）、圆筛藻（Coscinodiscus spp.）、颗粒直链藻（Melosira granulata）、微小小环藻（Cyclotella. caspia）是河口区咸淡水水域及近海区的主要种类。浮球藻（Planktosphneria gelotinosa）、栅藻（Scenedesmus spp.）、盘星藻（Pediastrim spp.）、小席藻（Phormidium tenus）是河口内区淡水水域的主要种类。根据浮游植物的生态类型及其生境特征大致可分为三大类群。浮游植物密度夏季最高,平均为358.68103cells/L,密集中心的季节变化明显,密度分布由优势类群的密度分布决定。中肋骨条藻和短角弯角藻的数量庞大,导致优势种突出,多样性降低,种间分布不均匀,群落结构简单化。与史料比对,种类组成因淡水藻类的列入而更丰富,密度年际降低,中肋骨条藻仍是第一优势种,但优势度有较大降幅,优势类群有重大年际变化,细胞个体较小的种类占优。盐度和营养盐对浮游植物的分布及密度变化造成极大的时空差异,存在线性、复合线性、多项回归等复杂的相关关系。     

马铃薯StSnRK2.1基因克隆与生物信息学分析

SnRK2基因对植物的逆境胁迫具有重要的调节作用,以马铃薯‘陇薯3号’(Solanum tuberosum)为试材,采用RT-PCR方法从马铃薯试管苗中克隆得到1个SnRK2.1基因cDNA,命名为StSnRK2.1,提交GenBank注册,注册号为JX280911。通过生物信息学分析,该基因开放阅读框全长1 008 bp,编码335个氨基酸。预测蛋白质分子量约为37.77 kD,等电点为5.37,蛋白质二级结构预测α-螺旋42.39%,延伸链16.42%,β-折叠7.46%,无规卷曲33.73%,具有疏水性,为膜内蛋白。亚细胞定位显示该基因出现在细胞质及微体中的可能性较大。肽链可能有7处丝氨酸磷酸化位点,2处苏氨酸磷酸化位点,以及3处酪氨酸磷酸化位点,因此推测该基因在植物抗逆中有重要的作用。