Species composition,distribution and seasonal dynamics of Rotifera in a Rift Valley lake in Ethiopia (Lake Awasa)

The species composition of rotifers in Lake Awasa was studied and 40 species recorded. Seven species appeared in large numbers in the plankton seasonally. Brachionus and Keratella species made up more than 50% of the rotifer community by numbers during the observation period (1983–1987). The standing stock numbers of rotifer species are low with a maximum of 50 individuals L^–1, and some possible reasons for this observation are discussed. Most rotifer species are distributed randomly in the lake and show 3-fold fluctuations between consecutive days.The seasonal dynamics of most rotifer species are correlated with mixing periods in the lake, and the amplitude of seasonal fluctuation may be as high as 50-fold. Clear-cut seasonal succession of rotifer species was observed during the study period, but no consistent seasonal pattern for individual species was obvious. Also, observations indicate that rotifer biomass is partly sustained by availability of carbon through the bacterial pathway and that competitive exclusion for food by nauplii and ciliates probably keeps rotifer abundance low.     

Periodicity of growth rings in Juniperus procera from Ethiopia inferred from crossdating and radiocarbon dating

African pencil cedar (Juniperus procera Hochst. ex Endlicher 1847) is a tropical, irregularly growing species that can produce annual growth rings in response to an annual cycle of wet and dry seasons. In this paper, we assess the periodicity of growth-ring formation for 13 stem discs from a site in Central-Northern Ethiopia by crossdating and radiocarbon dating. The crossdating process is described more transparently than usual to allow open discussion of the methodology employed. Although the ring-width series could be tentatively matched, radiocarbon dating revealed that the growth rings of the junipers from the studied site are neither annual nor represent a common periodicity. It was found that the trees are exceptionally sensitive and respond individually to the complex local climate. For future research, it is recommended to select more mesic sites with an unambiguously unimodal rainfall regime and to gain external evidence to support assumptions about the periodicity of growth-ring formation in Juniperus procera.     

Geographical variation in the response of visceral leishmaniasis to paromomycin in East Africa: a multicentre, open-label, randomized trial

Background

Visceral leishmaniasis (VL) is a major health problem in developing countries. The untreated disease is fatal, available treatment is expensive and often toxic, and drug resistance is increasing. Improved treatment options are needed. Paromomycin was shown to be an efficacious first-line treatment with low toxicity in India.

Methods

This was a 3-arm multicentre, open-label, randomized, controlled clinical trial to compare three treatment regimens for VL in East Africa: paromomycin sulphate (PM) at 15 mg/kg/day for 21 days versus sodium stibogluconate (SSG) at 20 mg/kg/day for 30 days; and the combination of both dose regimens for 17 days. The primary efficacy endpoint was cure based on parasite-free tissue aspirates taken 6 months after treatment.

Findings

Overall, 135 patients per arm were enrolled at five centres in Sudan (2 sites), Kenya (1) and Ethiopia (2), when the PM arm had to be discontinued due to poor efficacy. The trial has continued with the higher dose of PM as well as the combination of PM and SSG arms. These results will be reported later. Baseline patient characteristics were similar among treatment arms. The overall cure with PM was significantly inferior to that with SSG (63.8% versus 92.2%; difference 28.5%, 95%CI 18.8% to 38.8%, p<0.001). The efficacy of PM varied among centres and was significantly lower in Sudan (14.3% and 46.7%) than in Kenya (80.0%) and Ethiopia (75.0% and 96.6%). No major safety issues with PM were identified.

Conclusion

The efficacy of PM at 15 mg/kg/day for 21 days was inadequate, particularly in Sudan. The efficacy of higher doses and the combination treatment warrant further studies.     

Molecular phylogenetics and ecological diversification of the transisthmian fish genus Centropomus (Perciformes: Centropomidae).

Phylogenetic relationships among the 12 recognized fish species in the New World genus Centropomus (Pisces, Centropomidae) were analyzed using allozyme electrophoresis and 618 bp of the mitochondrial DNA 16S ribosomal RNA (rRNA) gene. Molecular phylogenetic trees were generally consistent with previously published partial hypotheses based on morphological evidence. However, previously undefined sister group relationships between major species groups were resolved using molecular data, and phylogenetic hypotheses for Centropomus based on 16S rRNA sequences were better supported than were allozyme-based hypotheses. The high level of congruence among the trees inferred from the nuclear and mitochondrial characters provided a firm phylogenetic basis for analysis of ecological diversification and molecular evolution in the genus. Compared to basal Centropomus species, members of the most nested species group were significantly larger in body size and occupied a marine niche only peripherally utilized by their congeners. We also observed substitution rate heterogeneity among 16S rRNA lineages; in contrast to expectations based on "metabolic rate" and "generation interval" models, relative substitution rates were faster than expected for the group of large-bodied snooks. Using the Pliocene rise of the Central American isthmian marine barrier to calibrate rates of 16S ribosomal gene evolution in Centropomus, we found that the rates for the genus were similar to those reported for higher vertebrates. Analysis of the three sets of transisthmian geminate taxa in Centropomus indicated that two of the pairs were probably formed during the Pliocene rise of the isthmus while the third pair diverged several million years earlier.     

The genomic and bioclimatic characterization of Ethiopian barley (Hordeum vulgare L.) unveils challenges and opportunities to adapt to a changing climate

The climate crisis is impacting agroecosystems and threatening food security of millions of smallholder farmers. Understanding the potential for current and future climatic adaptation of local crop agrobiodiversity may guide breeding efforts and support resilience of agriculture. Here, we combine a genomic and climatic characterization of a large collection of traditional barley varieties from Ethiopia, a staple for local smallholder farmers cropping in challenging environments. We find that the genomic diversity of barley landraces can be partially traced back to geographic and environmental diversity of the landscape. We employ a machine learning approach to model Ethiopian barley adaptation to current climate and to identify areas where its existing diversity may not be well adapted in future climate scenarios. We use this information to identify optimal trajectories of assisted migration compensating to detrimental effects of climate change, finding that Ethiopian barley diversity bears opportunities for adaptation to the climate crisis. We then characterize phenology traits in the collection in two common garden experiments in Ethiopia, using genome-wide association approaches to identify genomic loci associated with timing of flowering and maturity of the spike. We combine this information with genotype–environment associations finding that loci involved in flowering time may also explain environmental adaptation. Our data show that integrated genomic, climatic, and phenotypic characterizations of agrobiodiversity may provide breeding with actionable information to improve local adaptation in smallholder farming systems.     

The Chydorid Crustacean Alona diaphana (King), Limnetic in Lakes Awasa and Zwai,Ethiopia, with a Discussion of Littoral and Limnetic Zooplankton

Alona diaphana, a common littoral tropicopolitan cladoceran, occurs in the limnetic of two Ethiopian lakes in considerable numbers and over long periods of time. Our results are presented and the composition of limnetic and littoral zooplankton, in terms of previous records of such incursions, are discussed. The high persistent densities of A. diaphana are due to the extensive littoral areas in the lakes, where it originates, the high intrinsic rates of increase of this species, the low diversity of zooplankton, reducing competition and the low level of predation.     

First PCR Confirmed anthrax outbreaks in Ethiopia—Amhara region, 2018–2019

BackgroundAnthrax is a disease that affects humans and animals. In Ethiopia, anthrax is a reportable disease and assumed to be endemic, although laboratory confirmation has not been routinely performed until recently. We describe the findings from the investigation of two outbreaks in Amhara region.MethodsFollowing reports of suspected outbreaks in Wag Hamra zone (Outbreak 1) and South Gondar zone (Outbreak 2), multi-sectoral teams involving both animal and public health officials were deployed to investigate and establish control programs. A suspect case was defined as: sudden death with rapid bloating or bleeding from orifice(s) with unclotted blood (animals); and signs compatible with cutaneous, ingestion, or inhalation anthrax ≤7 days after exposure to a suspect animal (humans). Suspect human cases were interviewed using a standard questionnaire. Samples were collected from humans with suspected anthrax (Outbreak 1 and Outbreak 2) as well as dried meat of suspect animal cases (Outbreak 2). A case was confirmed if a positive test was returned using real-time polymerase chain reaction (qPCR).ResultsIn Outbreak 1, a total of 49 cows died due to suspected anthrax and 22 humans developed symptoms consistent with cutaneous anthrax (40% attack rate), two of whom died due to suspected ingestion anthrax. Three people were confirmed to have anthrax by qPCR. In Outbreak 2, anthrax was suspected to have caused the deaths of two livestock animals and one human. Subsequent investigation revealed 18 suspected cases of cutaneous anthrax in humans (27% attack rate). None of the 12 human samples collected tested positive, however, a swab taken from the dried meat of one animal case (goat) was positive by qPCR.ConclusionWe report the first qPCR-confirmed outbreaks of anthrax in Ethiopia. Both outbreaks were controlled through active case finding, carcass management, ring vaccination of livestock, training of health professionals and outreach with livestock owners. Human and animal health authorities should work together using a One Health approach to improve case reporting and vaccine coverage.     

Haplotype analysis of the mitochondrial DNA d‐loop region reveals the maternal origin and historical dynamics among the indigenous goat populations in east and west of the Democratic Republic of Congo

This study aimed at assessing haplotype diversity and population dynamics of three Congolese indigenous goat populations that included Kasai goat (KG), small goat (SG), and dwarf goat (DG) of the Democratic Republic of Congo (DRC). The 1169 bp d‐loop region of mitochondrial DNA (mtDNA) was sequenced for 339 Congolese indigenous goats. The total length of sequences was used to generate the haplotypes and evaluate their diversities, whereas the hypervariable region (HVI, 453 bp) was analyzed to define the maternal variation and the demographic dynamic. A total of 568 segregating sites that generated 192 haplotypes were observed from the entire d‐loop region (1169 bp d‐loop). Phylogenetic analyses using reference haplotypes from the six globally defined goat mtDNA haplogroups showed that all the three Congolese indigenous goat populations studied clustered into the dominant haplogroup A, as revealed by the neighbor‐joining (NJ) tree and median‐joining (MJ) network. Nine haplotypes were shared between the studied goats and goat populations from Pakistan (1 haplotype), Kenya, Ethiopia and Algeria (1 haplotype), Zimbabwe (1 haplotype), Cameroon (3 haplotypes), and Mozambique (3 haplotypes). The population pairwise analysis (F_ST ) indicated a weak differentiation between the Congolese indigenous goat populations. Negative and significant (p‐value <.05) values for Fu''s Fs (−20.418) and Tajima''s (−2.189) tests showed the expansion in the history of the three Congolese indigenous goat populations. These results suggest a weak differentiation and a single maternal origin for the studied goats. This information will contribute to the improvement of the management strategies and long‐term conservation of indigenous goats in DRC.     

Head capsule deformities in Chironomus spp. (Diptera: Chironomidae) as indicator of environmental stress in Sebeta River,Ethiopia

Urbanization and industrialization have placed most of the aquatic environments in developing countries at great risk. The absence of reliable biological monitoring programmes further complicates the situation. In this study, an attempt was made to assess incidence of deformities among Chironomus spp. response to the level of environmental degradation. For this purpose, chironomid larvae were sampled from Sebeta River (November, 2012) using Surber sampler and/or D‐frame dip net. Moreover, physico‐chemical analysis of the water and sediment heavy metal analysis were carried out at three study sites. The results indicate that most physico‐chemical variables were higher at the downstream sites (P < 0.05), together with high levels of Cr, Zn and Cu, which was attributed to untreated effluents that originated from garment and tannery industries. Several forms of deformities (mentum gap, notch, tooth missing and breakage) were encountered, and the majority occurred on mentum followed by pecten epipharynx. Taking 8% as a cut‐off value for normal deformities and the moderate rate of deformities detected (16.62% at Sb‐2), it is possible to conclude that the ecological state of Sebeta River is at critical condition. Therefore, corrective measures like designing of effective treatment plants and timely set environmental impact assessment must be in place prior to any developmental activity.