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431.
Md. Zahid Kamal Poornima Yedavalli Mandar V. Deshmukh Nalam Madhusudhana Rao 《Protein science : a publication of the Protein Society》2013,22(7):904-915
Studying alterations in biophysical and biochemical behavior of enzymes in the presence of organic solvents and the underlying cause(s) has important implications in biotechnology. We investigated the effects of aqueous solutions of polar organic solvents on ester hydrolytic activity, structure and stability of a lipase. Relative activity of the lipase monotonically decreased with increasing concentration of acetone, acetonitrile, and DMF but increased at lower concentrations (upto ~20% v/v) of dimethylsulfoxide, isopropanol, and methanol. None of the organic solvents caused any appreciable structural change as evident from circular dichorism and NMR studies, thus do not support any significant role of enzyme denaturation in activity change. Change in 2D [15N, 1H]‐HSQC chemical shifts suggested that all the organic solvents preferentially localize to a hydrophobic patch in the active‐site vicinity and no chemical shift perturbation was observed for residues present in protein's core. This suggests that activity alteration might be directly linked to change in active site environment only. All organic solvents decreased the apparent binding of substrate to the enzyme (increased Km); however significantly enhanced the kcat. Melting temperature (Tm) of lipase, measured by circular dichroism and differential scanning calorimetry, altered in all solvents, albeit to a variable extent. Interestingly, although the effect of all organic solvents on various properties on lipase is qualitatively similar, our study suggest that magnitudes of effects do not appear to follow bulk solvent properties like polarity and the solvent effects are apparently dictated by specific and local interactions of solvent molecule(s) with the protein. 相似文献
432.
Ammad Ahmad Farooqi Ali Naqi Muhammad Zahid Qureshi Aamir Rana Ammara Khan Asma M. Riaz Syed Muhammad Faheem Afzal Nabeelah Rasheed Shahzad Bhatti 《Cell biochemistry and function》2012,30(7):611-617
Research on prostate cancer progression has focused extensively on the concept of miRNA, which can operate either as promoters or as suppressors of carcinogenesis. Moreover, recent genetic studies and emerging functional work show that strikingly similar and overlapping pathways are involved in prostate carcinogenesis. Unswervingly, these elements constitute a recently explored ‘network of networks’ that dynamically reorganizes during DNA damage and is responsible for positively or negatively regulating genome organization and integrity. We consider these facets of convergence and discuss how insights from diametrically opposed interactions of ataxia–telangiectasia mutated and mitrons can inform us about, and possibly help us to get a step closer to personalized medicine. Copyright © 2012 John Wiley & Sons, Ltd. 相似文献
433.
434.
W. M. Achakzai W. A. Baloch S. Saddozai N. Memon 《Zeitschrift fur angewandte Ichthyologie》2013,29(5):1172-1172
The present study was undertaken to assess length‐weight relationships (LWRs) of Wallago attu (Bloch and Schneider, 1801) from Manchar Lake, in Pakistan. A total of 251 specimens collected from August 2011 to April 2012 were examined. Length‐weight equations were W = 0.00464 L 3.0819 (combined), W = 0.00387 L 3.120 (males) and W = 0.00632 L 3.00892 (females). 相似文献
435.
Platelet‐derived growth factor (PDGF) signalling in cancer: rapidly emerging signalling landscape 下载免费PDF全文
Platelet‐derived growth factor (PDGF)‐mediated signalling has emerged as one of the most extensively and deeply studied biological mechanism reported to be involved in regulation of growth and survival of different cell types. However, overwhelmingly increasing scientific evidence is also emphasizing on dysregulation of spatio‐temporally controlled PDGF‐induced signalling as a basis for cancer development. We partition this multi‐component review into recently developing understanding of dysregulation PDGF signalling in different cancers, how PDGF receptors are quantitatively controlled by microRNAs. Moreover, we also summarize most recent advancements in therapeutic targeting of PDGFR as evidenced by preclinical studies. Better understanding of the PDGF‐induced intracellular signalling in different cancers will be helpful in catalysing the transition from a segmented view of cancer biology to a conceptual continuum. 相似文献
436.
437.
Danish Memon Abhay K. Singh Himadri B. Pakrasi Pramod P. Wangikar 《Antonie van Leeuwenhoek》2013,103(2):331-346
Operons are an important feature of prokaryotic genomes. Evolution of operons is hypothesized to be adaptive and has contributed significantly towards coordinated optimization of functions. Two conflicting theories, based on (i) in situ formation to achieve co-regulation and (ii) horizontal gene transfer of functionally linked gene clusters, are generally considered to explain why and how operons have evolved. Furthermore, effects of operon evolution on genomic traits such as intergenic spacing, operon size and co-regulation are relatively less explored. Based on the conservation level in a set of diverse prokaryotes, we categorize the operonic gene pair associations and in turn the operons as ancient and recently formed. This allowed us to perform a detailed analysis of operonic structure in cyanobacteria, a morphologically and physiologically diverse group of photoautotrophs. Clustering based on operon conservation showed significant similarity with the 16S rRNA-based phylogeny, which groups the cyanobacterial strains into three clades. Clade C, dominated by strains that are believed to have undergone genome reduction, shows a larger fraction of operonic genes that are tightly packed in larger sized operons. Ancient operons are in general larger, more tightly packed, better optimized for co-regulation and part of key cellular processes. A sub-clade within Clade B, which includes Synechocystis sp. PCC 6803, shows a reverse trend in intergenic spacing. Our results suggest that while in situ formation and vertical descent may be a dominant mechanism of operon evolution in cyanobacteria, optimization of intergenic spacing and co-regulation are part of an ongoing process in the life-cycle of operons. 相似文献
438.
The epifaunal assemblage was evaluated at three different depths (5, 15 and 25 m) in the inshore waters of Pazhayar, Parangipettai
and Cuddalore apart from 5 m depth near SIPCOT covering totally 10 stations (11°21′ N to 11°42′ N; 79°46′49″ E to 79°52′34″
E) in the southeast coast of India, Bay of Bengal. The occurrence of as many as 112 species belonging to 6 groups was recorded.
Among these, gastropods constituted the largest component (42.85%) with 48 species. Bivalves came next with the percentage
contribution of 24.10% with 27 species. Crustaceans and polychaetes contributed with 16.96% (19 species) and 6.25% (7 species),
respectively. Others contributed with 9.82% (11 species). The maximum number of species was recorded in Cuddalore transect
(65 species) and the minimum in SIPCOT (20 species). The maximum abundance was recorded in SIPCOT (1363 ind./haul) but the
diversity was found to be lower here than in the other stations. The bivalve, Scapharca inaequivalvis was abundant only in this station whereas the large sized polychaetes, Epidiopatra hupferiana monroi and Sternaspis scutata were found only in the Pazhayar transect during all the seasons. Multivariate analyses were done to define assemblages. The
total number of species estimated by various extrapolators varied from 112 species to 169.73 species. The cluster analysis
revealed the gradual change in species composition with increase in depth. In the principal coordinate analysis (PCO) the
first two axes explained 49.8% of the total variability in the case of biota and 98.3% of the total variability in the case
of environmental variables. The distance based linear model (DISTLM) was used to find out the relationship between the abundance
of epifauna and environmental variables. Depth explained about 23.7% of the variability while temperature and pH explained
17.5 and 10.6%, respectively. The best solution suggested all the nine environmental variables to combinedly explain about
92.49% of the total variability 相似文献
439.
440.
Oliver D. Howes Thomas Whitehurst Ekaterina Shatalina Leigh Townsend Ellis Chika Onwordi Tsz Lun Allenis Mak Atheeshaan Arumuham Oisín OBrien Maria Lobo Luke Vano Uzma Zahid Emma Butler Martin Osugo 《World psychiatry》2021,20(1):75-95
The idea that a longer duration of untreated psychosis (DUP) leads to poorer outcomes has contributed to extensive changes in mental health services worldwide and has attracted considerable research interest over the past 30 years. However, the strength of the evidence underlying this notion is unclear. To address this issue, we conducted an umbrella review of available meta‐analyses and performed a random‐effects meta‐analysis of primary studies. MEDLINE, Web of Science, PsycINFO and EMBASE were searched from inception to September 3, 2020 to identify relevant meta‐analyses of studies including patients with schizophrenia spectrum disorders, first‐episode psychosis, or affective and non‐affective psychosis. Thirteen meta‐analyses were included, corresponding to 129 individual studies with a total sample size of 25,657 patients. We detected potential violations of statistical assumptions in some of these meta‐analyses. We therefore conducted a new random‐effects meta‐analysis of primary studies. The association between DUP and each outcome was graded according to a standardized classification into convincing, highly suggestive, suggestive, weak, or non‐significant. At first presentation, there was suggestive evidence for a relationship between longer DUP and more severe negative symptoms (beta=–0.07, p=3.6×10–5) and higher chance of previous self‐harm (odds ratio, OR=1.89, p=1.1×10–5). At follow‐up, there was highly suggestive evidence for a relationship between longer DUP and more severe positive symptoms (beta=–0.16, p=4.5×10–8), more severe negative symptoms (beta=–0.11, p=3.5×10–10) and lower chance of remission (OR=2.16, p=3.0×10–10), and suggestive evidence for a relationship between longer DUP and poorer overall functioning (beta=–0.11, p=2.2×10–6) and more severe global psychopathology (beta=–0.16, p=4.7×10–6). Results were unchanged when analysis was restricted to prospective studies. These effect sizes are clinically meaningful, with a DUP of four weeks predicting >20% more severe symptoms at follow‐up relative to a DUP of one week. We conclude that DUP is an important prognostic factor at first presentation and predicts clinically relevant outcomes over the course of illness. We discuss conceptual issues in DUP research and methodological limitations of current evidence, and provide recommendations for future research. 相似文献