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121.
Calisher CH Wagoner KD Amman BR Root JJ Douglass RJ Kuenzi AJ Abbott KD Parmenter C Yates TL Ksiazek TG Beaty BJ Mills JN 《Journal of wildlife diseases》2007,43(1):1-11
We used long-term data collected for up to 10 yr (1994-2004) at 23 trapping arrays (i.e., webs and grids) in Arizona, Colorado, Montana, and New Mexico to examine demographic factors known or suspected to be associated with risk of infection with Sin Nombre virus (SNV) in its natural host, the deer mouse (Peromyscus maniculatus). Gender, age (mass), wounds or scars, season, and local relative population densities were statistically associated with the period prevalence of antibody (used as a marker of infection) to SNV in host populations. Nevertheless, antibody prevalence and some of the risk factors associated with antibody prevalence, such as relative population density, gender bias, and prevalence of wounding, varied significantly among sites and even between nearby trapping arrays at a single site. This suggests that local microsite-specific differences play an important role in determining relative risk of infection by SNV in rodents and, consequently, in humans. Deer mouse relative population density varied among sites and was positively and statistically associated with infection prevalence, an association that researchers conducting shorter-term studies failed to demonstrate. Both wounding and antibody prevalence increased with mass class in both males and females; this increase was much more pronounced in males than in females and wounding was more frequent in adult males than in adult females. Prevalence of wounding was greatest among seropositive deer mice, regardless of mass class, but many deer mice without detectable wounds or scars eventually became infected. Many of these patterns, which will be useful in the development of predictive models of disease risk to humans, were only detected through the application of data collected over a long (10-yr) period and with abundant replication. 相似文献
122.
Herpes simplex virus type 1 cytoplasmic envelopment requires functional Vps4 总被引:6,自引:3,他引:3
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The assembly and egress of herpesviruses are complex processes that require the budding of viral nucleocapsids into the lumen of cytoplasmic compartments to form mature infectious virus. This envelopment stage shares many characteristics with the formation of luminal vesicles in multivesicular endosomes. Through expression of dominant-negative Vps4, an enzyme that is essential for the formation of luminal vesicles in multivesicular endosomes, we now show that Vps4 function is required for the cytoplasmic envelopment of herpes simplex virus type 1. This is the first example of a large enveloped DNA virus engaging the multivesicular endosome sorting machinery to enable infectious virus production. 相似文献
123.
We describe an efficient method for generating highly functional membrane proteins with variant amino acids at defined positions that couples a modified site saturation strategy with functional genetic selection. We applied this method to the production of a cysteine-less variant of the Crithidia fasciculata inosine-guanosine permease CfNT2 to facilitate biochemical studies using thiol-specific modifying reagents. Of 10 endogenous cysteine residues in CfNT2, two cannot be replaced with serine or alanine without loss of function. High-quality single- and double-mutant libraries were produced by combining a previously reported site saturation mutagenesis scheme based on the Stratagene Quikchange method with a novel gel purification step that effectively eliminated template DNA from the products. Following selection for functional complementation in Saccharomyces cerevisiae cells auxotrophic for purines, several highly functional noncysteine substitutions were efficiently identified at each desired position, allowing the construction of cysteine-less variants of CfNT2 that retained wild-type affinity for inosine. This combination of an improved site saturation mutagenesis technique and positive genetic selection provides a simple and efficient means to identify functional and perhaps unexpected amino acid variants at a desired position. 相似文献
124.
The intentional introduction of red king crab, Paralithodes camtschatica (Tilesius, 1815) in the Barents Sea represent one of a few successful cases and one that now supports a commercial fishery.
Introductions of alien species into new environments are often associated with genetic bottlenecks, which cause a reduction
in the genetic variation, and this could be important for the spreading potential of the species in the Atlantic Ocean. Red
king crab samples collected in the Varangerfjord located on the Barents Sea (northern Norway) were compared with reference
crab samples collected from the Bering Sea and Kamchatka regions in the Pacific Ocean. All samples were screened for eleven
microsatellite loci, based on the development of species-specific primers. The observed number of alleles per locus was similar,
and no reduction in genetic variation, including gene diversity and allelic richness, was detected between the Varangerfjord
sample and the reference sample from Okhotsk Sea near Kamchatka, indicating no genetic bottlenecking at least for the microsatellite
loci investigated. The same results were found in comparison with the sample from Bering Sea. The level of genetic differentiation
among the samples, measured as overall F
ST
across all loci, was relatively low (0.0238) with a range of 0.0035–0.1000 for the various loci investigated. The largest
pairwise F
ST
values were found between the Bering Sea and Varangerfjord/Barents Sea samples, with a value of 0.0194 across all loci tested.
The lowest value (0.0101) was found between the Varangerfjord and Kamchatka samples. Genetic differentiation based on exact
tests on allele frequencies revealed highly significant differences between all pairwise comparisons. The high level of genetic
variation found in the Varangerfjord/Barents Sea sample could be of significance with respect to further spreading of the
species to other regions in the North Atlantic Ocean. 相似文献
125.
Ma KL Ruan XZ Powis SH Moorhead JF Varghese Z 《American journal of physiology. Heart and circulatory physiology》2007,292(6):H2721-H2728
Sirolimus is a potent immunosuppressive agent and has an anti-atherosclerotic effect through its anti-proliferative property. The present study was undertaken to investigate the effect of sirolimus on intracellular cholesterol homeostasis in human vascular smooth muscle cells (VSMCs) in the presence of inflammatory cytokine IL-1 beta. We explored the effect of sirolimus on the lipid accumulation of VSMCs in the presence of IL-1 beta, using Oil Red O staining and quantitative measurement of intracellular cholesterol. The effect of sirolimus on the gene and protein expression of lipoprotein receptors and ATP binding cassettes (ABCA1 and ABCG1) was examined by real-time PCR and Western blotting, respectively. Furthermore, the effect of sirolimus on cholesterol efflux from VSMCs in the presence or absence of IL-1 beta was also investigated using [(3)H] cholesterol efflux. Finally, we examined the effect of sirolimus on the production of inflammatory cytokines in VSMCs using ELISA. Sirolimus reduced intracellular lipid accumulation in VSMCs mediated by IL-1 beta possibly due to the reduction of expression of low-density lipoprotein (LDL) and very low-density lipoprotein (VLDL) receptors. Sirolimus increased cholesterol efflux from VSMCs and overrode the suppression of cholesterol efflux induced by IL-1 beta. Sirolimus also increased ABCA1 and ABCG1 genes expression, even in the presence of IL-1 beta. We further confirmed that sirolimus inhibited mRNA and protein expression of inflammatory cytokines IL-6, tumor necrosis factor-alpha, IL-8, and monocyte chemoattractant protein-1. Inhibition of lipid uptake together with increasing cholesterol efflux and the inhibition of inflammatory cytokines are all important aspects of the anti-atherosclerotic effects of sirolimus on VSMCs. 相似文献
126.
Colin J. Yates David J. Coates Carole Elliott Margaret Byrne 《Biodiversity and Conservation》2007,16(5):1379-1395
In this study we investigate the composition of the potential honeyeater pollinator community, patterns of honeyeater visitation,
pollination and the mating system in a range of population fragments for the bird-pollinated mixed mating system shrub Calothamnus quadrifidus R.Br. Specifically, we aimed to answer the following questions. For smaller and more isolated population fragments are honeyeater
species lost from the pollinator community, patterns of visitation different, levels of pollination lower and rates of selfing,
biparental inbreeding and correlated paternity higher. The composition of the honeyeater community was similar across population
fragments and there was no relationship between the abundance of birds and population fragment size. Honeyeaters were most
commonly observed visiting numerous inflorescences within single plants in all populations, but as population fragments became
larger movements between plants were more commonly observed. Our observations of honeyeater visitation were generally consistent
with our measurements of pollination and patterns in the mating system across population fragments. We found no significant
relationship between population fragment size and levels of pollination. Mating system studies showed outcrossing rates (t
m) comparable to those found in other bird-pollinated Myrtaceae, and ranged from 0.54 to 0.90 across populations. Outcrossing
rates were not significantly correlated with log population size, but correlations of outcrossed paternity indicate a clear
trend from low correlated paternity in larger populations to significantly higher correlated paternities in smaller populations.
As a consequence mating in small populations will occur between much smaller groups of plants, and this may affect population
fitness in subsequent generations. 相似文献
127.
Sales J Vali L Hoyle DV Yates CM Amyes SG McKendrick IJ 《Journal of applied microbiology》2007,102(3):820-825
AIMS: The aim of this study was to gain a better understanding of the reason for the predicted pulsed-field gel electrophoresis (PFGE) pattern for the sequenced Escherichia coli O157:H7 EDL933 (EDL933) being different from that observed in practice, using the restriction enzyme Xba1. METHODS AND RESULTS: Primers were designed that flanked either side of each of the predicted Xba1 restriction sites, and the resultant PCR products were sequenced. No sequencing errors were found in the published genome. The distribution of dam methylation sites within the genome was investigated, and a new PFGE pattern was predicted by assuming that any Xba1 restriction site that coincided with a dam methylation site would not be cut. The estimated mean band sizes were obtained from six replicate gels. It was found that the observed and predicted PFGE patterns were in good agreement. CONCLUSIONS: The difference between the observed and the predicted PFGE patterns for EDL933, using Xba1, could be accounted for by assuming that the methylated restriction sites were not cut. SIGNIFICANCE AND IMPACT OF THE STUDY: PFGE is commonly used as a subtyping method. This study provides additional information about the basic technique that could enhance the interpretation of PFGE patterns in comparative studies of the E. coli isolates. 相似文献
128.
Dicks E Teague JW Stephens P Raine K Yates A Mattocks C Tarpey P Butler A Menzies A Richardson D Jenkinson A Davies H Edkins S Forbes S Gray K Greenman C Shepherd R Stratton MR Futreal PA Wooster R 《Bioinformatics (Oxford, England)》2007,23(13):1689-1691
The undertaking of large-scale DNA sequencing screens for somatic variants in human cancers requires accurate and rapid processing of traces for variants. Due to their often aneuploid nature and admixed normal tissue, heterozygous variants found in primary cancers are often subtle and difficult to detect. To address these issues, we have developed a mutation detection algorithm, AutoCSA, specifically optimized for the high throughput screening of cancer samples. Availability: http://www.sanger.ac.uk/genetics/CGP/Software/AutoCSA. 相似文献
129.
We previously reported the metabolic 15N labeling of a rat where enrichment ranged from 94% to 74%. We report here an improved labeling strategy which generates 94% 15N enrichment throughout all tissues of the rat. A high 15N enrichment of the internal standard is necessary for accurate quantitation, and thus, this approach will allow quantitative mass spectrometry analysis of animal models of disease targeting any tissue. 相似文献
130.