调亏灌水和分蘖干扰对冬小麦生长的补偿效应

为探索抑制个体功能的生长冗余以实现群体性能优化并挖掘作物高产潜力的途径,通过桶栽试验,选择分蘖能力中等的小偃22号和分蘖能力较强的郑麦7698,对比研究2种灌水模式（全生育期充分灌水和分生育期调亏灌水）和3种分蘖干扰（从拔节期开始去除所有小分蘖,仅保留主茎和1个大分蘖;抽穗期去除所有无效分蘖;以不作任何干扰为对照）,来模拟不同水分供应和不可预测干扰对冬小麦生理生长、产量和水分利用效率的补偿机制.结果表明： 2个冬小麦品种均存在生长冗余.与小偃22号相比,郑麦7698有效分蘖数较高,但穗部性状较差.调亏灌水和抽穗期去除无效分蘖均可减少生长冗余,弱化竞争能力,改变源 库关系,提高资源分配.但冗余消除过度（拔节期干扰）则会破坏植株固有的根冠平衡和功能结构,导致生长的不足补偿.与对照相比,调亏灌水联合抽穗期去除无效分蘖可在时空尺度上充分开发和利用作物自身调控潜力实现补偿生长,在不显著影响籽粒产量的同时可提高水分利用效率20.4%～25.4%,是适宜的减冗增效措施.     

丛枝菌根真菌对茄子黄萎病的防治效果和茄子植株生长的影响

研究了接种丛枝菌根真菌(AMF)对茄子生长和对黄萎病的影响,并且探讨了AMF诱导植物抗病性的生理生化变化。结果表明:接种AMF能促进茄子的生长,明显降低茄子黄萎病的发病率和发病指数;与只接黄萎菌处理比较,在先接种AMF然后接种黄萎病原菌的情况下,可以降低茄子叶内脯氨酸含量和相对电导率,提高根系活力,提高过氧化物酶(POD)、多酚氧化酶(PPO)和苯丙氨酸解氨酶(PAL)的活性。试验显示,AMF对茄子黄萎病具有一定的生防效果。这种抗性可能来源于AMF提高了茄子营养水平,激活了植物抗病机制。     

长链非编码RNA功能的研究进展及其与癌症的关系

长链非编码RNA(long noncoding RNA,lnc RNA)是指长度在200个核苷酸以上且不能编码蛋白质的RNA。lnc RNA起初被认为是转录噪声,但后续研究表明,许多lnc RNA只在机体特定生理状态的特定部位表达,或是只在某些特定的生物过程中表达,对特定lnc RNA的基因敲低可导致表型改变,从而证明了其是有功能的。事实上,目前的lnc RNA研究几乎覆盖所有的生理学和病理学过程,也包括癌症的发生发展。癌症是细胞失控生长所导致的一类疾病,是每年人口死亡的主要原因之一,其发生、发展机理与相应治疗策略的研究,已成为当今的一大课题。近年来,越来越多的lnc RNA被证明参与了癌症的多种发生发展过程,从而逐渐成为预防与治疗癌症的新突破口。文章就lnc RNA目前已知的功能及其与癌症的关系做一综述。     

用罗丹明B实现微波辐照下细胞水平温度的实时测量

为了探讨用温度敏感性荧光探针罗丹明B(rhodamine B,Rho-B)测量微波辐照下细胞水平温度的方法,利用激光共聚焦显微镜和光纤测温仪测得的数据拟合出罗丹明B荧光探针荧光强度与温度的关系式,并利用该荧光探针对微波辐照过程中细胞水平的温度进行实时测量。结果显示,温度与荧光探针的荧光强度呈现较好的线性关系。利用拟合的温度-相对荧光强度关系式可得到升温过程(25~40℃)中细胞水平的准确温度,这为生物电磁实验中细胞水平的实时温度监测提供了一种较为便捷可行的方法。     

Solid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit Membranes

Solid-state NMR has been used to determine the structures of membrane proteins in native-like lipid bilayer environments. Most structure calculations based on solid-state NMR observables are performed using simulated annealing with restrained molecular dynamics and an energy function, where all nonbonded interactions are represented by a single, purely repulsive term with no contributions from van der Waals attractive, electrostatic, or solvation energy. To our knowledge, this is the first application of an ensemble dynamics technique performed in explicit membranes that uses experimental solid-state NMR observables to obtain the refined structure of a membrane protein together with information about its dynamics and its interactions with lipids. Using the membrane-bound form of the fd coat protein as a model membrane protein and its experimental solid-state NMR data, we performed restrained ensemble dynamics simulations with different ensemble sizes in explicit membranes. For comparison, a molecular dynamics simulation of fd coat protein was also performed without any restraints. The average orientation of each protein helix is similar to a structure determined by traditional single-conformer approaches. However, their variations are limited in the resulting ensemble of structures with one or two replicas, as they are under the strong influence of solid-state NMR restraints. Although highly consistent with all solid-state NMR observables, the ensembles of more than two replicas show larger orientational variations similar to those observed in the molecular dynamics simulation without restraints. In particular, in these explicit membrane simulations, Lys⁴⁰, residing at the C-terminal side of the transmembrane helix, is observed to cause local membrane curvature. Therefore, compared to traditional single-conformer approaches in implicit environments, solid-state NMR restrained ensemble simulations in explicit membranes readily characterize not only protein dynamics but also protein-lipid interactions in detail.     

CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model

Slow diffusion of the lipids in conventional all-atom simulations of membrane systems makes it difficult to sample large rearrangements of lipids and protein-lipid interactions. Recently, Tajkhorshid and co-workers developed the highly mobile membrane-mimetic (HMMM) model with accelerated lipid motion by replacing the lipid tails with small organic molecules. The HMMM model provides accelerated lipid diffusion by one to two orders of magnitude, and is particularly useful in studying membrane-protein associations. However, building an HMMM simulation system is not easy, as it requires sophisticated treatment of the lipid tails. In this study, we have developed CHARMM-GUI HMMM Builder (http://www.charmm-gui.org/input/hmmm) to provide users with ready-to-go input files for simulating HMMM membrane systems with/without proteins. Various lipid-only and protein-lipid systems are simulated to validate the qualities of the systems generated by HMMM Builder with focus on the basic properties and advantages of the HMMM model. HMMM Builder supports all lipid types available in CHARMM-GUI and also provides a module to convert back and forth between an HMMM membrane and a full-length membrane. We expect HMMM Builder to be a useful tool in studying membrane systems with enhanced lipid diffusion.     

Calcium release through P2X4 activates calmodulin to promote endolysosomal membrane fusion

Intra-endolysosomal Ca²⁺ release is required for endolysosomal membrane fusion with intracellular organelles. However, the molecular mechanisms for intra-endolysosomal Ca²⁺ release and the downstream Ca²⁺ targets involved in the fusion remain elusive. Previously, we demonstrated that endolysosomal P2X4 forms channels activated by luminal adenosine triphosphate in a pH-dependent manner. In this paper, we show that overexpression of P2X4, as well as increasing endolysosomal P2X4 activity by alkalinization of endolysosome lumen, promoted vacuole enlargement in cells and endolysosome fusion in a cell-free assay. These effects were prevented by inhibiting P2X4, expressing a dominant-negative P2X4 mutant, and disrupting the P2X4 gene. We further show that P2X4 and calmodulin (CaM) form a complex at endolysosomal membrane where P2X4 activation recruits CaM to promote fusion and vacuolation in a Ca²⁺-dependent fashion. Moreover, P2X4 activation-triggered fusion and vacuolation were suppressed by inhibiting CaM. Our data thus suggest a new molecular mechanism for endolysosomal membrane fusion involving P2X4-mediated endolysosomal Ca²⁺ release and subsequent CaM activation.