Population structure of the Southeast Asian river catfish Mystus nemurus

A total of 143 microsatellites were isolated from Mystus nemurus using a 5' anchored polymerase chain reaction technique or the random amplified hybridization microsatellite method, the first set of microsatellite markers developed for the Southeast Asian river catfish. Twenty polymorphic microsatellite loci were used as markers for population characterization of M. nemurus from six different geographical locations in Malaysia (Perak, Kedah, Johor, UPM, Sarawak and Terengganu). The number of alleles per locus ranged from 2 to 11 with 6.3 as the average number of alleles per locus. Characterization of the populations showed relatively high levels of genetic variation compared with previous studies using allozyme markers. The highest genetic similarity was found between Perak and Kedah, while the highest genetic distance was found between Terengganu and Kedah. The majority of clustering was in accordance with geographical locations and the histories of the populations. Microsatellite analysis indicated that the Sarawak population might be genetically closer to the Peninsular Malaysian populations than has been previously shown by other molecular marker studies.     

Direct binding of PP2A to Sprouty2 and phosphorylation changes are a prerequisite for ERK inhibition downstream of fibroblast growth factor receptor stimulation

In the context of fibroblast growth factor (FGF) signaling, Sprouty2 (Spry2) is the most profound inhibitor of the Ras/ERK pathway as compared with other Spry isoforms. An exclusive, necessary, but cryptic PXXPXR motif in the C terminus of Spry2 is revealed upon stimulation. The activation of Spry2 appears to be linked to sequences in the N-terminal half of the protein and correlated with a bandshifting seen on SDS-PAGE. The band-shifting is likely caused by changes in the phosphorylation status of key Ser and Thr residues following receptor stimulation. Dephosphorylation of at least two conserved Ser residues (Ser-112 and Ser-115) within a conserved Ser/Thr sequence is accomplished upon stimulation by a phosphatase that binds to Spry2 around residues 50-60. We show that human Spry2 co-immunoprecipitates with both the catalytic and the regulatory subunits of protein phosphatase 2A (PP2A-C and PP2A-A, respectively) in cells upon FGF receptor (FGFR) activation. PP2A-A binds directly to Spry2, but not to Spry2Delta50-60 (Delta50-60), and the activity of PP2A increases with both FGF treatment and FGFR1 overexpression. c-Cbl and PP2A-A compete for binding centered around Tyr-55 on Spry2. We show that there are at least two distinct pools of Spry2, one that binds PP2A and another that binds c-Cbl. c-Cbl binding likely targets Spry2 for ubiquitin-linked destruction, whereas the phosphatase binding and activity are necessary to dephosphorylate specific Ser/Thr residues. The resulting change in tertiary structure enables the Pro-rich motif to be revealed with subsequent binding of Grb2, a necessary step for Spry2 to act as a Ras/ERK pathway inhibitor in FGF signaling.     

Assessment of Natural Radioactivity Levels and Potential Radiological Risks of Common Building Materials Used in Bangladeshi Dwellings

The concentrations of primordial radionuclides (²²⁶Ra, ²³²Th and ⁴⁰K) in commonly used building materials (brick, cement and sand), the raw materials of cement and the by-products of coal-fired power plants (fly ash) collected from various manufacturers and suppliers in Bangladesh were determined via gamma-ray spectrometry using an HPGe detector. The results showed that the mean concentrations of ²²⁶Ra, ²³²Th and ⁴⁰K in all studied samples slightly exceeded the typical world average values of 50 Bq kg⁻¹, 50 Bq kg⁻¹ and 500 Bq kg⁻¹, respectively. The activity concentrations (especially ²²⁶Ra) of fly-ash-containing cement in this study were found to be higher than those of fly-ash-free cement. To evaluate the potential radiological risk to individuals associated with these building materials, various radiological hazard indicators were calculated. The radium equivalent activity values for all samples were found to be lower than the recommended limit for building materials of 370 Bq kg^-1, with the exception of the fly ash. For most samples, the values of the alpha index and the radiological hazard (external and internal) indices were found to be within the safe limit of 1. The mean indoor absorbed dose rate was observed to be higher than the population-weighted world average of 84 nGy h^–1, and the corresponding annual effective dose for most samples fell below the recommended upper dose limit of 1 mSv y^–1. For all investigated materials, the values of the gamma index were found to be greater than 0.5 but less than 1, indicating that the gamma dose contribution from the studied building materials exceeds the exemption dose criterion of 0.3 mSv y^-1 but complies with the upper dose principle of 1 mSv y⁻¹.     

Screening of Malaysian indigenous microalgae for antioxidant properties and nutritional value

Fourteen indigenous microalgal samples from Malaysia were isolated, purified and cultured from fresh, brackish and marine waters. The ability of the microalgae to be natural sources of antioxidants was studied by a screening test using three antioxidant chemical assays [ferric thiocyanate (FTC), thiobarbituric acid (TBA) and 1, 1’-diphenyl-2-picrylhydrazyl (DPPH)]. The results showed that six microalgal methanolic crude extracts (Isochrysis galbana, Chaetoceros calcitrans, Scenedesmus quadricauda, Chlorella vulgaris, Nannochloropsis oculata and Tetraselmis tetrathele) were active in inhibiting the lipid peroxidation of linoleic acid. Among all the microalgae, I. galbana and C. calcitrans showed the highest antioxidant activity (>90%) in FTC and TBA assays, indicating that these microalgae might contain active compounds for protection from lipid peroxidation. Nutritional analyses were performed on microalgae with high antioxidant activities (I. galbana and C. calcitrans) in order to investigate their nutritive value. Both microalgae were found to be rich in nutrients. For examples, I. galbana had average percentage composition of protein, carbohydrate, and lipid, as 47.9 ± 2.5; 26.8 ± 0.2; 14.5 ± 1.4%, respectively, while the corresponding values for C. calcitrans were 36.4 ± 1.7; 27.4 ± 3.0; 15.5 ± 0.9%. In addition, they contained high levels of omega-3 polyunsatrated fatty acids (PUFA) (28.0% ± 0.7 in I. galbana and 28.5% ± 1.4 in C. calcitrans), omega-6 PUFA (6.5% ± 1.8 in I. galbana and 23.0% ± 2.5 in C. calcitrans) and a high composition of essential amino acids. This study illustrates that some microalgae such as I. galbana and C. calcitrans have the potential to be used as natural sources of antioxidants with high nutritional value. Presented at the 6th Meeting of the Asian Pacific Society of Applied Phycology, Manila, Philippines.     

Immunological parameters of Javanese carp Puntius gonionotus (Bleeker) exposed to copper and challenged with Aeromonas hydrophila.

This study was to determine the median lethal concentration (LC50) of copper to Javenese carp, Puntius gonionotus (Bleeker), and the immune response after the fish were exposed to sublethal levels of copper and challenged with formalin killed Aeromonas hydrophila. The LC50 of copper on P. gonionotus at 24, 48, 72, 96 and 120 h were estimated as 2.17, 0.91, 0.57, 0.53 and 0.42 mg l(-1), respectively. To determine the effect of copper on the immune system, fish were exposed for 66 days to 0.05, 0.10 and 0.15 mg Cu l(-1). After 56 days of initial exposure to copper, fish were challenged with 0.1 ml of 4.5 x 10(5) cfu ml(-1) formalin killed A. hydrophila and maintained in the same concentration of copper. After the challenge, the immune response was monitored for 2 weeks using haematological and serological assays. During the initial phase of exposure to copper, significant changes were noted in the white blood cell, lysozyme, potential killing activity, total plasma protein, total immunoglobulin and haematocrit levels between the control and treated fish. One week after challenge with A. hydrophila, there was a significant increase in the values of white blood cells, total protein and total immunoglobulin compared to the values before the challenge. However, these values were not significantly different (P>0.05) between the control and the treated fish. In contrast, NBT and lysozyme assays exhibited a significant difference (P<0.05) in fish exposed to 0.10 mg Cu l(-1) (0.525 +/- 0.17; 24.42 +/- 3.35 x 10(2) micromg ml(-1)) and 0.15 mg Cu 1(-1) (0.536 +/- 0.19; 21.78 +/- 1.29 x 10(2) micromg ml(-1)) compared to the control (0.746 +/- 0.31; 30.73 +/- 5.42 x 10(2) micromg ml(-1)) after the bacterial challenge (day 61). There was however no significant difference (P>0.05) in NBT and lysozyme levels in fish exposed to lower level of copper (0.05 mg Cu l(-1)), suggesting the absence of immunosuppressive effects at lower level of exposure.     

Age,growth and length–weight relationships of Pinna bicolor Gmelin (Bivalvia: Pinnidae) in the seagrass beds of Sungai Pulai Estuary,Johor, Peninsular Malaysia

Age and growth of Pinna bicolor were examined in the seagrass beds of Merambong shoal (N 1°19′55.62″; E 103°35′57.75″) off the south‐western coast of Johor, Peninsular Malaysia between May 2006 and April 2007. Monthly growth increment data of P. bicolor were analyzed using FiSAT software (FAO‐ICLARM Stock Assessment Tools) to estimate the asymptotic length (L_∞) and growth coefficient (K). Average growth rate of P. bicolor was 1.42 (±0.01) cm per month; the estimated asymptotic length (L_∞) and growth coefficient (K) were 34.66 cm and 0.88 per year, respectively. In their natural habitat, P. bicolor attain shell heights of approximately 17, 25 and 30 cm at the end of their first, second and third years of growth. The length–weight relationship was estimated as Log W = ?5.397 + 3.111Log L, and in exponential form the equation was W = 0.000004L^3.111 (r² = 0.99, P < 0.01). Habitat temperature and salinity ranged between 27.47 and 29.66°C and 28.66–33.00 ppt with a mean of 29.10 (±0.66) m°C and 30.52 (±1.41) ppt, respectively.     

Effect of hydrogen sulphide on liver somatic index and Fulton's condition factor in Mystus nemurus

The growth rate and liver somatic index were significantly ( P <0.05) lower in Mystus nemurus exposed to hydrogen sulphide compared to controls. These differences increased with corresponding increases in hydrogen sulphide concentrations. No significant differences ( P >0.05) in Fulton's condition factor were detected between the exposed fish and the controls. The results revealed that liver somatic index is a more sensitive indicator of hydrogen sulphide toxicity compared to Fulton's condition factor.     

The application of an life cycle inventory (LCI) model for solid waste disposal systems in malaysia

This paper discusses the application of an LCt model for solid waste management systems in Malaysia. The model was used to analyze the environmental and economic impacts of municipal waste management systems in Malaysia. In the first part of the study, the LCI model was adapted to analyze waste management systems of four selected cities: Kuala Lumpur and Penang to represent urban areas; Seremban to represent moderately urban areas and Muar to represent rural areas. The results have shown that Kuala Lumpur and Penang had greater Global Warming Potential (GWP) and the costs spent on the solid waste management were also higher as compared to that in suburban areas. In the second part of the study, a detailed evaluation was carried out by analyzing the implication of introducing incineration and composting into the solid waste management system, and the results were compared with the current system, i.e. 100 % landfilled. The relative GWP was lower for incineration, but the cost was extremely high. The results also showed that the final solid waste to be disposed to landfills and the impact due to water emissions could be reduced significantly when incineration and composting were introduced.     

Direct Association of Sprouty-related Protein with an EVH1 Domain (SPRED) 1 or SPRED2 with DYRK1A Modifies Substrate/Kinase Interactions

The mammalian SPRED (Sprouty-related protein with an EVH1 domain) proteins include a family of three members, SPRED1–3. Currently, little is known about their biochemistry. The best described, SPRED1, has been shown to inhibit the Ras/ERK pathway downstream of Ras. All three SPREDs have a cysteine-rich domain (CRD) that has high homology to the CRD of the Sprouty family of proteins, several of which are also Ras/ERK inhibitors. In the belief that binding partners would clarify SPRED function, we assayed for their associated proteins. Here, we describe the direct and endogenous interaction of SPRED1 and SPRED2 with the novel kinase, DYRK1A. DYRK1A has become the subject of recent research focus as it plays a central role in Caenorhabditis elegans oocyte maturation and egg activation, and there is strong evidence that it could be involved in Down syndrome in humans. Both SPRED1 and SPRED2 inhibit the ability of DYRK1A to phosphorylate its substrates, Tau and STAT3. This inhibition occurs via an interaction of the CRD of the SPREDs with the kinase domain of DYRK1A. DYRK1A substrates must bind to the kinase to enable phosphorylation, and SPRED proteins compete for the same binding site to modify this process. Our accumulated evidence indicates that the SPRED proteins are likely physiological modifiers of DYRK1A.