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941.
Spatial distribution as a measure of conservation needs: an example with Asiatic black bears in south-western China 总被引:1,自引:0,他引:1
Fang Liu William McShea David Garshelis Xiaojian Zhu Dajun Wang Ji'en Gong Youping Chen 《Diversity & distributions》2009,15(4):649-659
Aim To create a fine‐scale map of the distribution of Asiatic black bears, identify landscape variables affecting the spatial range of this species and assess population trends using presence–absence data and opinions of local villagers. Location Sichuan Province, south‐western China. Methods We divided the province into 15 × 15 km cells, stratified them by forest cover, elevation and road density and randomly selected 494 cells (21% of province) for surveys. In each cell, we interviewed villagers and ground‐verified their reports of bear presence. We ground‐truthed reports of bear absence by conducting transects for bear sign in the best available habitat. We used logistic regression to identify key variables affecting presence of bears and predict their occurrence in unsampled cells. Results We detected bears in 360 cells (73%). Models correctly predicted bear occurrence in 90.3% of cells where we detected bears and 84.5% of sampled cells where bears were absent. Models predicted 42.7% of Sichuan to be occupied by bears. Bear occurrence was strongly related to forest cover throughout the province. Roads had a negative effect in western region of province. Agricultural lands had a negative effect only when they were distant from forests. Villagers were accurate in their knowledge of bear presence or absence. Interviewed villagers (n = 1816) thought that bears were increasing in 32%, stable in 10%, and decreasing in 58% of cells with bears. Where bear populations were perceived to be declining, villagers identified poaching as the most common cause. Main conclusions Our fine‐scale distribution map can be used for future monitoring and the key landscape factors related to occupancy by bears can be used in management plans for this species. Interviewing local villagers is an efficient and reliable means of assessing distribution, and changes therein, for animals such as bears that often interact with people and leave obvious signs. 相似文献
942.
Maokai Gong 《Biochemical and biophysical research communications》2009,379(4):1001-1004
Paraoxonase 1 (PON1) protects the oxidative modification of low-density lipoprotein (LDL) and is a major anti-atherosclerotic protein component of high-density lipoprotein (HDL). Quercetin, a ubiquitous plant flavonoid, has been shown to have a number of bioactivities and may offer a variety of potential therapeutic uses. We explored the roles of quercetin in the regulation of PON1 expression, serum and liver activity and protective capacity of HDL against LDL oxidation in rats. Compared to the pair-fed control group, feeding quercetin (10 mg/L) in the liquid diet for 4 weeks increased (a) hepatic expression of PON1 by 35% (p < 0.01), (b) serum and liver PON1 activities by 29% (p < 0.05) and 57% (p < 0.01), respectively, and (c) serum homocysteine thiolactonase (HCTL) activity by 23% (p < 0.05). Correspondingly, the lag time of low-density lipoprotein (LDL) oxidation was increased by >3-fold (p < 0.001) with plasma HDL from quercetin-fed group compared to the HDL from control group. Our data suggest that quercetin has antiatherogenic effect by up regulating PON1 gene expression and its protective capacity against LDL oxidation. 相似文献
943.
944.
Min Xu Lin Bai Yong Gong Wei Xie Haiying Hang Tao Jiang 《The Journal of biological chemistry》2009,284(31):20457-20461
Cellular DNA lesions are efficiently countered by DNA repair in conjunction with delays in cell cycle progression. Previous studies have demonstrated that Rad9, Hus1, and Rad1 can form a heterotrimeric complex (the 9-1-1 complex) that plays dual roles in cell cycle checkpoint activation and DNA repair in eukaryotic cells. Although the 9-1-1 complex has been proposed to form a toroidal structure similar to proliferating cell nuclear antigen (PCNA), which plays essential roles in DNA replication and repair, the structural basis by which it performs different functions has not been elucidated. Here we report the crystal structure of the human 9-1-1 complex at 3.2 Å resolution. The crystal structure, together with biochemical assays, reveals that the interdomain connecting loops (IDC loop) of hRad9, hHus1, and hRad1 are largely divergent, and further cocrystallization study indicates that a PCNA-interacting box (PIP box)-containing peptide derived from hFen1 binds tightly to the interdomain connecting loop of hRad1, providing the molecular basis for the damage repair-specific activity of the 9-1-1 complex in contrast to PCNA. Furthermore, structural comparison with PCNA reveals other unique structural features of the 9-1-1 complex that are proposed to contribute to DNA damage recognition.Cellular DNA damage triggers the activation of the cell cycle checkpoint, leading to a delay or arrest in cell cycle progression to prevent replication and inducing DNA damage repair (1, 2). In response to DNA damage, the 9-1-13 complex can be loaded onto DNA lesion sites by Rad17-RFC2–5 (which consists of one large subunit, Rad17, and four small subunits, RFC2–5), where it triggers the activation of the cell cycle checkpoint (3, 4). Moreover, the 9-1-1 complex can also directly participate in DNA repair via physical association with many factors involved in base excision repair (BER), translesion synthesis, homologous recombination, and mismatch repair pathways (5–9).Although both the 9-1-1 and the PCNA complexes perform critical functions in eukaryotic cells with predicted similar structures (10), their specific roles are distinct. First, the 9-1-1 complex is a DNA damage sensor in the cell cycle checkpoint but does not function as a scaffold for the major DNA replication factors; however, PCNA plays exactly the opposite role (1, 11). Second, although both the complexes function in DNA repair, their specific activities are different. Previous observations indicated that some BER enzymes, such as MYH (MutY glycosylate homolog) (12), TDG (thymine DNA glycosylate) (7), and NEIL (Nei-like glycosylate) (8), interact with the 9-1-1 complex via motifs that are located outside the conserved PCNA-interacting box (the PIP box), implying that the 9-1-1 complex functions as a damage repair-specific clamp, in contrast to PCNA. However, the structural basis for this hypothesis remains unclear. Another important unresolved issue concerns the damage-sensing mechanism of the 9-1-1 complex. During the DNA replication process, the PCNA·RFC clamp·clamp loader specifically recognizes the primer-template junction (13). However, the molecular basis by which the 9-1-1·Rad17-RFC2–5 clamp·clamp loader specifically recognizes the damaged DNA is little known. To address these questions, we performed structural and biochemical studies on the 9-1-1 complex. 相似文献
945.
Hong Wang Liping Hu Knut Dalen Heidi Dorward Amy Marcinkiewicz Deanna Russell Dawei Gong Constantine Londos Tomohiro Yamaguchi Cecilia Holm Mark A. Rizzo Dawn Brasaemle Carole Sztalryd 《The Journal of biological chemistry》2009,284(46):32116-32125
Lipolysis is an important metabolic pathway controlling energy homeostasis through degradation of triglycerides stored in lipid droplets and release of fatty acids. Lipid droplets of mammalian cells are coated with one or more members of the PAT protein family, which serve important functions in regulating lipolysis. In this study, we investigate the mechanisms by which PAT family members, perilipin A, adipose differentiation-related protein (ADFP), and LSDP5, control lipolysis catalyzed by hormone-sensitive lipase (HSL), a major lipase in adipocytes and several non-adipose cells. We applied fluorescence microscopic tools to analyze proteins in situ in cultured Chinese hamster ovary cells using fluorescence recovery after photobleaching and anisotropy Forster resonance energy transfer. Fluorescence recovery after photobleaching data show that ADFP and LSDP5 exchange between lipid droplet and cytoplasmic pools, whereas perilipin A does not. Differences in protein mobility do not correlate with PAT protein-mediated control of lipolysis catalyzed by HSL or endogenous lipases. Forster resonance energy transfer and co-immunoprecipitation experiments reveal that each of the three PAT proteins bind HSL through interaction of the lipase with amino acids within the highly conserved amino-terminal PAT-1 domain. ADFP and LSDP5 bind HSL under basal conditions, whereas phosphorylation of serine residues within three amino-terminal protein kinase A consensus sequences of perilipin A is required for HSL binding and maximal lipolysis. Finally, protein kinase A-mediated phosphorylation of HSL increases lipolysis in cells expressing ADFP or LSDP5; in contrast, phosphorylation of perilipin A exerts the major control over HSL-mediated lipolysis when perilipin is the main lipid droplet protein. 相似文献
946.
947.
Xiaowen Gong Weiyuan Ye Haibo Zhou Xiaohui Ren Zhigang Li Weiyin Zhou Jun Wu Yicheng Gong Qi Ouyang Xiaolin Zhao Xuejun Zhang 《Acta biochimica et biophysica Sinica》2009,(11):883-891
Acetylcholinesterase (ACHE) expression may be induced during apoptosis in various cell types. Here, we used the C-terminal of AChE to screen the human fetal brain library and found that it interacted with Ran-binding protein in the microtubule-organizing center (RanBPM). This interaction was further confirmed by coimmunoprecipitation analysis. In HEK293T cells, RanBPM and AChE were heterogeneously expressed in the cisplatin-untreated cytoplasmic extracts and in the cisplatin-treated cytoplasmic or nuclear extracts. Our previous studies performed using morphologic methods have shown that AChE translocates from the cytoplasm to the nucleus during apoptosis. Taken together, these results suggest that RanBPM is an AChE-interacting protein that is translocated from the cytoplasm into the nucleus during apoptosis, similar to the translocation observed in case of ACHE. 相似文献
948.
949.
Xiaoyu Guo Guilian Zhang Huili Gong Kaiyun Wang Jintun Zhang 《Frontiers of Biology in China》2009,4(2):222-227
To investigate the dynamic changes in the artificial vegetation in an abandoned mining site, we analyzed the relationships
among community types, environmental variables and community structure in the process of vegetation restoration in the Antaibao
mining site, China by survey of the communities and use of biological dating methods. By means of the quantitative classification
method (two-way indicator-species analysis, TWINSPAN) and the ordination technique (de-trended correspondence analysis, DCA;
and de-trended canonical correspondence analysis, DCCA), the plant communities were classified into seven groups: community
I, Robinia pseudoacacia + Pinus tabulaeformis-Caragana korshinskii-Agropyron cristatum; community II, Robinia pseudoacacia-Hippophae rhamnoides-Artemisia capillaries; community III, Ulmus pumila-Elaeagnus angustifolia-Artemisia capillaries;community IV, Caragana korshinskii-Agropyron cristatum + Artemisia capillaries; community V, Hippophae rhamnoides-Elymus dahuricus; community VI, Elaeagnus angustifolia + Hippophae rhamnoides-Brassica jucea;community VII, Hippophae rhamnoides + Elaeagnus angustifolia-Salsola collina. We conclude that the community types and diversity are mainly influenced by the succession time and the soil organic matter
content. The forest community is more adaptable to the special inhabitation than the shrub community. 相似文献
950.
RuiJie Zhang Xia Li YongShuai Jiang GuiYou Liu ChuanXing Li Fan Zhang Yun Xiao BinSheng Gong 《中国科学:生命科学英文版》2009,52(2):163-172
High-throughout single nucleotide polymorphism detection technology and the existing knowledge provide strong support for
mining the disease-related haplotypes and genes. In this study, first, we apply four kinds of haplotype identification methods
(Confidence Intervals, Four Gamete Tests, Solid Spine of LD and fusing method of haplotype block) into high-throughout SNP
genotype data to identify blocks, then use cluster analysis to verify the effectiveness of the four methods, and select the
alcoholism-related SNP haplotypes through risk analysis. Second, we establish a mapping from haplotypes to alcoholism-related
genes. Third, we inquire NCBI SNP and gene databases to locate the blocks and identify the candidate genes. In the end, we
make gene function annotation by KEGG, Biocarta, and GO database. We find 159 haplotype blocks, which relate to the alcoholism
most possibly on chromosome 1∼22, including 227 haplotypes, of which 102 SNP haplotypes may increase the risk of alcoholism.
We get 121 alcoholism-related genes and verify their reliability by the functional annotation of biology. In a word, we not
only can handle the SNP data easily, but also can locate the disease-related genes precisely by combining our novel strategies
of mining alcoholism-related haplotypes and genes with existing knowledge framework.
Supported by the National Natural Science Foundation of China (Grant Nos. 30570424, 60601010 and 30600367), the National High-Tech
Research and Development Program of China, (Grant No.2007AA02Z329), the Key Science and Technology Program of Heilongjiang
Province(Grant No.GB03C602-4), Natural Science Foundation of Heilongjiang Province (Grant No. F2008-02), Youth Science Foundation
of Harbin Medical University (Grant No. 060045) and Science Foundation of Heilongjiang Province Education Department (Grant
Nos. 11531113 and 1152hq28). 相似文献