The Joint Effect of hOGG1, APE1, and ADPRT Polymorphisms and Cooking Oil Fumes on the Risk of Lung Adenocarcinoma in Chinese Non-Smoking Females

Background

The human 8-oxoguanine DNA glycosylase 1 (hOGG1), apurinic/apyrimidinic endonuclease 1 (APE1), and adenosine diphosphate ribosyl transferase (ADPRT) genes play an important role in the DNA base excision repair pathway. Single nucleotide polymorphisms (SNPs) in critical genes are suspected to be associated with the risk of lung cancer. This study aimed to identify the association between the polymorphisms of hOGG1 Ser326Cys, APE1 Asp148Glu, and ADPRT Val762Ala, and the risk of lung adenocarcinoma in the non-smoking female population, and investigated the interaction between genetic polymorphisms and environmental exposure in lung adenocarcinoma.

Methods

We performed a hospital-based case-control study, including 410 lung adenocarcinoma patients and 410 cancer-free hospital control subjects who were matched for age. Each case and control was interviewed to collect information by well-trained interviewers. A total of 10 ml of venous blood was collected for genotype testing. Three polymorphisms were analyzed by the polymerase chain reaction-restriction fragment length polymorphism technique.

Results

We found that individuals who were homozygous for the variant hOGG1 326Cys/Cys showed a significantly increased risk of lung adenocarcinoma (OR = 1.54; 95% CI: 1.01–2.36; P = 0.045). When the combined effect of variant alleles was analyzed, we found an increased OR of 1.89 (95% CI: 1.24–2.88, P = 0.003) for lung adenocarcinoma individuals with more than one homozygous variant allele. In stratified analyses, we found that the OR for the gene-environment interaction between Ser/Cys and Cys/Cys genotypes of hOGG1 codon 326 and cooking oil fumes for the risk of lung adenocarcinoma was 1.37 (95% CI: 0.77–2.44; P = 0.279) and 2.79 (95% CI: 1.50–5.18; P = 0.001), respectively.

Conclusions

The hOGG1 Ser326Cys polymorphism might be associated with the risk of lung adenocarcinoma in Chinese non-smoking females. Furthermore, there is a significant gene-environment association between cooking oil fumes and hOGG1 326 Cys/Cys genotype in lung adenocarcinoma among female non-smokers.     

Statistical method for prediction of gait kinematics with Gaussian process regression

We propose a novel methodology for predicting human gait pattern kinematics based on a statistical and stochastic approach using a method called Gaussian process regression (GPR). We selected 14 body parameters that significantly affect the gait pattern and 14 joint motions that represent gait kinematics. The body parameter and gait kinematics data were recorded from 113 subjects by anthropometric measurements and a motion capture system. We generated a regression model with GPR for gait pattern prediction and built a stochastic function mapping from body parameters to gait kinematics based on the database and GPR, and validated the model with a cross validation method. The function can not only produce trajectories for the joint motions associated with gait kinematics, but can also estimate the associated uncertainties. Our approach results in a novel, low-cost and subject-specific method for predicting gait kinematics with only the subject's body parameters as the necessary input, and also enables a comprehensive understanding of the correlation and uncertainty between body parameters and gait kinematics.     

植物苯丙氨酸解氨酶(PAL)在细胞分化中的作用

烟草、丹参和甜叶菊愈伤组织在分化过程中一般都出现两个PAL活性高峰。第一高峰在培养第一、二、三天中出现;第二高峰在第十一天前后出现。前者在分化或不分化培养基中都存在,似与组织分化无关,后者只在分化条件下才有,似可作为组织启动分化的指示酶。分化程度不同的组织,PAL活性有很大差异,即将或刚分化的组织活性最高,随着分化的进程活性趋于降低,老化的组织甚至丧失活性。PAL活性、木质素合成和管状份子形成之间有着紧密的相关性。     

影响棉铃虫增殖马尾松毛虫质型多角体病毒的条件因子的初步探讨

棉铃虫为马尾松毛虫多角体病毒 (DPCPV)理想的替代寄主。试验结果表明 ,不同接毒方法、接种浓度、接种温度及接种虫龄对棉铃虫增殖病毒有影响 ,以病毒涂在人工饲料表面的接毒方法、2 0～ 2 3℃温度及 3龄虫为最佳组合条件。由于利用棉铃虫生产出的病毒 (Ha DPCPV)容易诱发棉铃虫本身的多角体病毒 (NPV) ,尤其对那些带有NPV源的虫种 ,Ha DPCPV不宜作毒种 ,因此为慎重起见 ,最好用马尾松毛虫复制出的病毒作为生产毒种。     

不同生物土壤结皮微生物组跨膜转运蛋白基因多样性及差异

【背景】跨膜转运蛋白在微生物转运各种物质的过程中具有重要作用。【目的】通过比较原核微生物组磷酸转移酶(phosphotransferasesystem,PTS)系统和腺苷三磷酸结合盒(ATP-binding cassette,ABC)转运蛋白编码基因在两种不同生物土壤结皮中(藻结皮与藓结皮)的差异,以期揭示随着生物土壤结皮的发育演替,微生物组跨膜转运物质的生物学过程中的潜在变化趋势。【方法】对腾格里沙漠东南缘的藻结皮和藓结皮12个样品进行宏基因组测序,参照KEGG数据库PTS系统,与ABC转运蛋白代谢通路进行比较并筛选相关基因,分析其差异显著性。【结果】藻结皮和藓结皮PTS系统和ABC转运蛋白编码基因的多样性一致。在生物土壤结皮中共检测到16种PTS系统的转运蛋白的编码基因,具有显著性差异的有5种;检测到106种ABC转运蛋白的编码基因,具有显著性差异的有46种,并对这46种转运蛋白结合的底物以及变化趋势进行了详细的描述。【结论】生物土壤结皮发育演替过程中,微生物组从环境中摄取能够增加渗透势物质的潜力总体呈现降低趋势,转运氨基酸、细胞膜和细胞壁组分的潜力总体呈现增加趋势,对于矿物离子、...     

植被综合生态质量时空变化动态监测评价模型

为了能掌握全国植被综合生态质量的高低及其时空变化,构建了既能反映植被生产力又能反映植被覆盖度的植被综合生态质量指数,建立了植被综合生态质量指数年际对比和多年变化趋势评价模型。利用构建的指数和评价模型,以2017年作为监测评价的当年,以2000—2017年作为评价的多年时段,对全国植被综合生态质量时空变化进行了监测评价。结果表明：（1）2017年全国大部地区植被综合生态质量指数高于2000—2016年多年平均值,生态质量偏好;2017年福建、广西、海南、广东、云南植被综合生态质量位居全国前五位,构建的植被综合生态质量指数及其年际对比模型可以定量反映全国植被综合生态质量的空间差异和年际差异。（2）全国有90.7%的区域2000—2017年植被综合生态质量指数呈提高趋势,东北地区西部、内蒙古东部、华北大部、西北地区东部、西南地区东部、华南西部等地生态质量指数提升明显,构建的植被综合生态质量指数多年变化趋势评价模型可以定量反映植被生态质量的多年变化趋势和幅度。（3）南方大部地区2000—2017年平均年植被综合生态质量指数在50.0以上,北方大部地区在50.0以下;我国中东部大部地区在20.0以上,西部大部地区在20.0以下,表明南方大部地区年植被生态质量好于北方、中东大部好于西部。可见,构建的植被综合生态质量指数及其年际对比和多年变化趋势评价模型,能够监测评价当年和多年全国植被综合生态质量的时空变化,可为掌握全国植被生态质量动态提供模型和方法。     

伤寒沙门菌非编码RNA617的分子鉴定及其对生物膜形成的影响研究

本研究旨在探讨伤寒沙门菌(Salmonella enterica serovar Typhi, S. Typhi)中非编码RNA617(non-coding RNA617,ncRNA617)的分子特性,并研究其对生物膜形成的影响及作用机制。采用Northern blot方法检测ncRNA617的表达,通过cDNA 5’末端快速扩增技术(5’-rapid amplification of cDNA end,5’RACE)和逆转录-聚合酶链式反应(reverse transcriotion-polymerase chain reaction,3’RT-PCR)实验分析ncRNA617可能的转录起始位点和终止位点;构建ncRNA617缺陷菌株、回补菌株和过表达菌株等相关菌株,通过生物膜形成实验,观察ncRNA617对伤寒沙门菌生物膜形成的影响,并用实时荧光定量聚合酶链式反应(quantitative real-time polymerase chain reaction,qPCR)分析生物膜形成相关基因表达水平的变化,综合运用生物信息学方法预测ncRNA617和差异基因的结合区域,初步分析ncRNA617发挥调控作用的机制。结果显示,伤寒沙门菌确有ncRNA617的表达,长度约300 nt,其转录起始位点位于mig-14终止密码子下游967 nt处,终止位点位于t2681起始密码子上游 2 378～2 560 nt处。与野生对照菌株相比,ncRNA617缺陷菌株生物膜形成能力增强(P<0.05),回补菌株的生物膜形成能力恢复至野生菌株水平,过表达菌株的生物膜形成能力有所下降(P<0.05)。qPCR结果表明,ncRNA617可负向调控多个生物膜形成相关基因的转录表达水平(P<0.05)。经生物信息学方法预测发现,ncRNA617与差异基因有不同的结合区域。本研究结果提示,ncRNA617在伤寒沙门菌中存在,其长度约270～452 nt。ncRNA617可能通过靶向结合生物膜形成相关基因下调基因表达,从而负向调控伤寒沙门菌生物膜的生成。     

An integrated fluid–structure interaction and thrombosis model for type B aortic dissection

False lumen thrombosis (FLT) in type B aortic dissection has been associated with the progression of dissection and treatment outcome. Existing computational models mostly assume rigid wall behavior which ignores the effect of flap motion on flow and thrombus formation within the FL. In this study, we have combined a fully coupled fluid–structure interaction (FSI) approach with a shear-driven thrombosis model described by a series of convection–diffusion reaction equations. The integrated FSI-thrombosis model has been applied to an idealized dissection geometry to investigate the interaction between vessel wall motion and growing thrombus. Our simulation results show that wall compliance and flap motion can influence the progression of FLT. The main difference between the rigid and FSI models is the continuous development of vortices near the tears caused by drastic flap motion up to 4.45 mm. Flap-induced high shear stress and shear rates around tears help to transport activated platelets further to the neighboring region, thus speeding up thrombus formation during the accelerated phase in the FSI models. Reducing flap mobility by increasing the Young’s modulus of the flap slows down the thrombus growth. Compared to the rigid model, the predicted thrombus volume is 25% larger using the FSI-thrombosis model with a relatively mobile flap. Furthermore, our FSI-thrombosis model can capture the gradual effect of thrombus growth on the flow field, leading to flow obstruction in the FL, increased blood viscosity and reduced flap motion. This model is a step closer toward simulating realistic thrombus growth in aortic dissection, by taking into account the effect of intimal flap and vessel wall motion.

     

Development and characterization of 33 polymorphic microsatellite markers in Trachurus japonicus by SLAF-seq technology

Trachurus japonicus is an economically important fish in the northwestern Pacific Ocean. However, its resources have declined seriously and there is an urgent need for a wide-range of investigations of the existing genetic resources. This requires a large number of diverse molecular markers with high discriminating power. In this study, we identified 43,264 perfect SSRs in T. japonicus genome using SLAF-seq technology. Of these, we randomly selected 106 SSRs (tri-nucleotide to hexa-nucleotide) to test for polymorphism. Eventually, we successfully developed a total of 33 loci including 8 tri-nucleotide and 25 long repeat motifs (tetra-nucleotide to hexa-nucleotide). The number of alleles (Na) of these loci ranged from 4 to 24 (mean 12.6). The observed heterozygosity (Ho) and expected heterozygosity (He) varied from 0.258 to 0.969 (mean 0.723) and from 0.452 to 0.962 (mean 0.827), respectively. All loci except TJ6-7 were highly informative (PIC > 0.5). These results showed that the shortlisted 33 loci exhibited moderate to relatively high genetic diversity, of which 18 were regarded as highly polymorphic and well-resolved. In summary, these diverse and potential microsatellites detected in our study provide substantial genetic basis for the screening of polymorphic SSR markers of T. japonicus and also provide a powerful tool to perform further studies on the genetic resource assessment and conservation of T. japonicus.     

Synthesis,telomerase inhibitory and anticancer activity of new 2-phenyl-4H-chromone derivatives containing 1,3,4-oxadiazole moiety

Based on previous studies, 66 2-phenyl-4H-chromone derivatives containing amide and 1,3,4-oxadiazole moieties were prepared as potential telomerase inhibitors. The results showed most of the title compounds exhibited significantly inhibitory activity on telomerase. Among them, some compounds demonstrated the most potent telomerase inhibitory activity (IC₅₀ < 1 µM), which was significantly superior to the staurosporine (IC₅₀ = 6.41 µM). In addition, clear structure–activity relationships were summarised, indicating that the substitution of the methoxy group and the position, type and number of the substituents on the phenyl ring had significant effects on telomerase activity. Among them, compound A33 showed considerable inhibition against telomerase. Flow cytometric analysis showed that compound A33 could arrest MGC-803 cell cycle at G2/M phase and induce apoptosis in a concentration-dependent way. Meanwhile, Western blotting revealed that this compound could reduce the expression of dyskerin, which is a fragment of telomerase.