橙色荧光蛋白的研究进展及其应用

荧光蛋白(Fluorescent protein,FPs)可作为探针用以探究细胞内分子间相互作用,追踪特定代谢物的代谢途径,对活细胞内的各种代谢过程和细胞通路进行详细、准确的描述。目前已有的FPs几乎已经覆盖了从紫外光到远红外光的所有光谱波段,这些FPs借助高分辨率显微技术应用于生命科学的诸多领域,为生物学的发展作出巨大贡献。橙色FPs通常指光谱区间在540–570nm的FPs,近几年来关于橙色FPs的研究进展较快,并且其作为标记蛋白以及荧光共振能量转移技术(Fluorescence resonance energy transfer,FRET)中的荧光受体在生物学及医学领域得到较多的应用。文中综述了近15年橙色FPs领域的相关研究,重点聚焦橙色FPs的发展和应用,为今后橙色FPs的研究提供依据。     

不同林型树倒林隙内微立地类型的土壤微团聚体组成及其分形特征

采用野外调查和室内分析相结合的方法,分析小兴安岭地区阔叶红松林和云冷杉红松林两种林型下树倒林隙内丘坑微立地类型(丘顶和坑底)土壤微团聚体组成及其分形特征。结果表明: 两种林型的土壤微团聚体0.25～2 mm和0.05～0.25 mm粒级含量较高,分别为25.7%～50.7%和27.0%～42.8%,<0.002 mm粒级含量最小,为4.4%～8.9%。在两种林型的树倒林隙内,坑底和丘顶的土壤容重较大,且丘顶土壤养分含量均高于坑底。阔叶红松林树倒林隙内丘顶和坑底的土壤养分含量均高于云冷杉红松林。<0.002 mm土壤微团聚体与土壤物理和化学性质均无相关性,0.25～2 mm和0.002～0.02 mm土壤微团聚体分别与土壤非毛管孔隙度、总孔隙度、通气度、有机质、全磷、全氮和有机碳之间呈极显著正相关和极显著负相关。整体来看,阔叶红松林的土壤分形维数(D)和土壤特征微团聚体组成比例(PCM)大于云冷杉红松林。两种林型下,丘顶和坑底的土壤特征微团聚体粒级比值(RMD)均增高。土壤D和PCM与各土壤理化性质均无显著相关性,土壤RMD与土壤毛管孔隙度、总孔隙度、土壤容重和通气度呈显著负相关。丘顶和坑底微立地的形成会导致土壤较大粒级微团聚体减少,土壤微团聚体稳定性降低,土壤D和PCM增加,RMD显著增加;土壤RMD可作为定量化描述不同林型下丘坑微立地内土壤理化性质的指标。     

向日葵枯萎病拮抗芽胞杆菌的筛选与生防评价

目的筛选向日葵枯萎病拮抗芽胞杆菌菌株并研究其抗菌谱,探讨环境条件对菌株抑菌活性的影响并通过植物栽培完成生防评价。方法从向日葵根际土壤中选择性分离芽胞杆菌,通过5点对峙法确定1株高效拮抗菌株,进行鉴定后,测定其抑菌谱;单因素实验探讨环境条件对抑菌活性的影响;向日葵发芽实验完成生防评价。结果确定1株高效的枯萎病拮抗菌株WBFL-1,经鉴定为枯草芽胞杆菌,该菌对镰刀菌属具有广谱抗性,其抑菌活性的最佳条件是温度40℃,pH值7.0,接种量150μL,发酵时间48 h。生防评价表明该菌对枯萎病的拮抗效果显著。结论该菌可为农作物枯萎病的生物防治提供有效菌种储备。     

Meeting report on the 2019 international symposium of molecular design breeding in animals (Yangling,China) with the consensus on genome-editing agricultural animals and their regulation

Transgenic Research -     

An Efficient Plant Regeneration System of <i>Hydrangea bretschneideri</i> Dipp via Stem Segments as Explants

Hydrangea bretschneideri Dipp is a highly popular ornamental plant for garden decoration. Genetic engineering technology has been successfully used in many plant species, but it is limited in Hydrangea. Here we established an efficient regeneration system by using stem segments as explants for the first time. In our study, the plant growth regulators (PGRs) were evaluated at the different regeneration processes, including axillary shoots regeneration and root induction. We found that the optimal concentration for axillary buds’ induction was 2.0 mgL⁻¹ 6-BA and 0.5 mgL⁻¹ 1 IAA, its highest induction rate was 70%. Moreover, the highest axillary shoots proliferation coefficient was 10.7 on the Murashige and Skoog (MS) medium with 2.0 mgL⁻¹ 6-benzyladenine (BA), 0.2 mgL⁻¹ indole-3-butyric acid (IBA), and 1.0 mgL⁻¹ gibberellin A3 (GA3). The highest frequency of root induction was 80.0 ± 0.06% by culturing the elongated shoots in 1/2 MS medium containing 0.1 mgL⁻¹ IBA. In summary, our study will provide an effective technology for large-scale propagation and important pathway for promoting the popularization and application of Hydrangea bretschneideri Dipp.     

DNA barcoding of Oryza: conventional,specific, and super barcodes

Key message

We applied the phylogenomics to clarify the concept of rice species, aid in the identification and use of rice germplasms, and support rice biodiversity.

Abstract

Rice (genus Oryza) is one of the most important crops in the world, supporting half of the world’s population. Breeding of high-yielding and quality cultivars relies on genetic resources from both cultivated and wild species, which are collected and maintained in seed banks. Unfortunately, numerous seeds are mislabeled due to taxonomic issues or misidentifications. Here, we applied the phylogenomics of 58 complete chloroplast genomes and two hypervariable nuclear genes to determine species identity in rice seeds. Twenty-one Oryza species were identified. Conspecific relationships were determined between O. glaberrima and O. barthii, O. glumipatula and O. longistaminata, O. grandiglumis and O. alta, O. meyeriana and O. granulata, O. minuta and O. malampuzhaensis, O. nivara and O. sativa subsp. indica, and O. sativa subsp. japonica and O. rufipogon. D and L genome types were not found and the H genome type was extinct. Importantly, we evaluated the performance of four conventional plant DNA barcodes (matK, rbcL, psbA-trnH, and ITS), six rice-specific chloroplast DNA barcodes (psaJ-rpl33, trnC-rpoB, rps16-trnQ, rpl22-rps19, trnK-matK, and ndhC-trnV), two rice-specific nuclear DNA barcodes (NP78 and R22), and a chloroplast genome super DNA barcode. The latter was the most reliable marker. The six rice-specific chloroplast barcodes revealed that 17% of the 53 seed accessions from rice seed banks or field collections were mislabeled. These results are expected to clarify the concept of rice species, aid in the identification and use of rice germplasms, and support rice biodiversity.

     

miR-194-5p negatively regulates the proliferation and differentiation of rabbit skeletal muscle satellite cells

Molecular and Cellular Biochemistry - Skeletal muscle satellite cells (SMSCs), also known as a multipotential stem cell population, play a crucial role during muscle growth and regeneration. In...     

MicroRNA-197-3p mediates damage to human coronary artery endothelial cells via targeting TIMP3 in Kawasaki disease

Kawasaki disease (KD) causes cardiovascular system injury in children. However, the pathogenic mechanisms of KD have not been well defined. Recently, strong correlation between aberrant microRNAs and KD nosogenesis has been revealed. A role of microRNA-197-3p (miR-197-3p) in the pathogenesis of KD is identified in the present study. Cell proliferation assay showed human coronary artery endothelial cells (HCAECs) were suppressed by serum from KD patients, which was correlated with high levels of miR-197-3p in both KD serum and HCAECs cultured with KD serum. The inhibition of HCAECs by miR-197-3p was confirmed by cells expressing miR-197-3p mimic and miR-197-3p inhibitor. Comparative proteomics analysis and Ingenuity Pathway Analysis (IPA) revealed TIMP3 as a potential target of miR-197-3p, which was demonstrated by western blot and dual-luciferase reporter assays. Subsequently, by detecting the endothelium damage markers THBS1, VWF, and HSPG2, the role of miR-197-3p/TIMP3 in KD-induced damage to HCAECs was confirmed, which was further validated by a KD mouse model in vivo. The expressions of miR-197-3p and its target, TIMP3, are dramatically variational in KD serum and HCAECs cultured with KD serum. Increased miR-197-3p induces HCAECs abnormal by restraining TIMP3 expression directly. Hence, dysregulation of miR-197-3p/TIMP3 expression in HCAECs may be an important mechanism in cardiovascular endothelium injury in KD patients, which offers a feasible therapeutic target for KD treatment.