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991.
992.
Takuya Shiina Ritsuko Watanabe Iyo Shiraishi Masao Suzuki Yuki Sugaya Kentaro Fujii Akinari Yokoya 《Radiation and environmental biophysics》2013,52(1):99-112
DNA from plasmid pUC18 was irradiated with low-LET (13 keV/μm) or high-LET (60 keV/μm) carbon ions or X-rays (4 keV/μm) in solutions containing several concentrations of Tris (0.66–200 mM) to determine the yield of abasic (AP) sites and the effect of scavenging capacity. The yield of AP sites, detected as single-strand breaks (SSB) after digestion with E. coli endonuclease IV (Nfo), was compared with that of SSB and base lesions. At higher concentrations of Tris, the yields of single or clustered AP sites were significantly lower than those of single or clustered base lesions. The relative yields of single AP sites and AP clusters were less than 10 and 7 %, respectively, of the total damage produced at a scavenger capacity mimicking that in cells. The dependence of the yield of AP sites on scavenging capacity was similar to that of prompt strand breaks. The ratios of the yield of isolated AP sites to that of SSB induced by carbon ion or X-ray irradiation were relatively constant at 0.45 ± 0.15 over the tested range of scavenger capacity, although the ratio of SSB to double-strand breaks (DSB) showed the characteristic dependence on both scavenging capacity and radiation quality. These results indicate that the reaction of water radiolysis products, presumably OH radicals, with the sugar-phosphate moieties in the DNA backbone induces both AP sites and SSB with similar efficiency. Direct ionization of DNA is notably more involved in the production of DSB and base lesion clusters than in the production of AP site clusters. 相似文献
993.
994.
995.
Yuki F. Kita Kazuyoshi Hosomichi Shingo Suzuki Hidetoshi Inoko Takashi Shiina Mai Watanabe Ayumi Tanaka Taku Horie Hiroshi Ohizumi Sho Tanaka Toshihide Iwasaki Masao Ota Jerzy K. Kulski 《Marine Mammal Science》2013,29(3):474-496
The biological and genetic structure of common bottlenose dolphins (Tursiops truncatus) that migrate seasonally near Japan remains largely unknown. We investigated the genetic and family structure in a group of 165 common bottlenose dolphins caught off the coast of Japan using mitochondrial DNA (mtDNA) and 20 microsatellite DNA markers. Phylogenetic analysis of the mtDNA control region sequences suggested that the dolphins were related more closely to oceanic types from Chinese waters than other geographic regions. The information on sex, sexual maturation and age together with the genetic markers revealed a strong likelihood for 37 familial relationships related mostly to maternity and an under‐representation of juvenile female offspring. The maternal dolphins had a similar offspring‐birth interval as the coastal types from North Atlantic Ocean, but a slightly younger first‐progeny age. The sex bias in the captured group was particularly marked towards an over‐representation of males among the young and immature dolphins, whereas the mature adults had an equal number of males and females. These results should be useful for future comparative biological, genetic and evolutionary investigations of bottlenose dolphins from the North Pacific Ocean with those from other regions. 相似文献
996.
Jin Zhang Katsuhide Mizuno Yuki Murata Hideaki Koide Midori Murakami Kunio Ihara Tsutomu Kouyama 《Proteins》2013,81(9):1585-1592
Deltarhodopsin, a new member of the microbial rhodopsin family, functions as a light‐driven proton pump. Here, we report the three‐dimensional structure of deltarhodopsin (dR3) from Haloterrigena thermotolerans at 2.7 Å resolution. A crystal belonging to space group R32 (a, b = 111.71 Å, c = 198.25 Å) was obtained by the membrane fusion method. In this crystal, dR3 forms a trimeric structure as observed for bacteriorhodopsin (bR). Structural comparison of dR with bR showed that the inner part (the proton release and uptake pathways) is highly conserved. Meanwhile, residues in the protein–protein contact region are largely altered so that the diameter of the trimeric structure at the cytoplasmic side is noticeably larger in dR3. Unlike bR, dR3 possesses a helical segment at the C‐terminal region that fills the space between the AB and EF loops. A significant difference is also seen in the FG loop, which is one residue longer in dR3. Another peculiar property of dR3 is a highly crowded distribution of positively charged residues on the cytoplasmic surface, which may be relevant to a specific interaction with some cytoplasmic component.Proteins 2013; © 2013 Wiley Periodicals, Inc. 相似文献
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998.
Yoshitada Tanabe Fumihito Tajima Yuki Nakamura Eriko Shibasaki Mai Wakejima Takashi Shimomura Rie Murai Yoshiyuki Murawaki Koichi Hashiguchi Takamasa Kanbe Toshiya Saeki Miho Ichiba Yoko Yoshida Masahiro Mitsunari Soichi Yoshida Jun-ichiro Miake Yasutaka Yamamoto Naoki Nagata Tasuku Harada Akihiro Kurimasa Ichiro Hisatome Naoki Terakawa Yoshikazu Murawaki Goshi Shiota 《Biochemical and biophysical research communications》2011,(4):769
999.
Yukiko Matsumoto Masaya Matsumura Sugihiko Hoshizaki Yuki Sato Hiroaki Noda 《Applied Entomology and Zoology》2011,46(3):435-442
The twisted-wing parasite Elenchus japonicus is a major parasitoid of rice planthoppers (Hemiptera: Delphacidae), including the brown planthopper Nilaparvata lugens, the white-backed planthopper Sogatella furcifera, and the small brown planthopper Laodelphax striatellus. Another Elenchus species, E. yasumatsui, which is considered to be synonymous with E. japonicus, has also been described in southern Asia. However, limited biological and molecular data on this important parasitoid of
rice planthoppers are available. In this study, E. japonicas-stylopized planthoppers were obtained from various regions in Asia and Japan. Sequences of the nuclear 18S ribosomal RNA
gene and the mitochondrial cytochrome oxidase I gene of the strepsipterans were analyzed from 40 samples of E. japonicus: 14 from N. lugens, 6 from S. furcifera and 20 from L. striatellus. Sequence analysis of these samples revealed three genotypes of E. japonicus. Of the three types of E. japonicus, one was isolated only from L. striatellus from northern Japan. The other two types were found in all three rice planthopper species collected from a wide area in Asia.
These results suggest that the three different genotypes of Elenchus can be associated with a particular geographical region and/or planthopper species. The relationship between two previously
described Elenchus species and the present three genotypes needs to be elucidated. 相似文献
1000.
Kouchi Z Fujiwara Y Yamaguchi H Nakamura Y Fukami K 《Biochemical and biophysical research communications》2011,(4):384-529
Numerous epidemiological data indicate that vitamin D receptor (VDR) signaling induced by its ligand or active metabolite 1α,25-dihydroxyvitamin D3 (1α,25(OH)2D3) has anti-cancer activity in several colon cancers. 1α,25(OH)2D3 induces the epithelial differentiation of SW480 colon cancer cells expressing VDR (SW480-ADH) by upregulating E-cadherin expression; however, its precise mechanism remains unknown. We found that phosphatidylinositol-5-phosphate 4-kinase type II beta (PIPKIIβ) but not PIPKIIα is required for VDR-mediated E-cadherin induction in SW480-ADH cells. The syntenin-2 postsynaptic density protein/disc large/zona occludens (PDZ) domain and pleckstrin homology domain of phospholipase C-delta1 (PLCδ1 PHD) possess high affinity for phosphatidylinositol-4,5-bisphosphate (PI(4,5)P2) mainly localized to the nucleus and plasma membrane, respectively. The expression of syntenin-2 PDZ but not PLCδ1 PHD inhibited 1α,25(OH)2D3-induced E-cadherin upregulation, suggesting that nuclear PI(4,5)P2 production mediates E-cadherin expression through PIPKIIβ in a VDR-dependent manner. PIPKIIβ is also involved in the suppression of the cell motility induced by 1α,25(OH)2D3. These results indicate that PIPKIIβ-mediated PI(4,5)P2 signaling is important for E-cadherin upregulation and inhibition of cellular motility induced by VDR activation. 相似文献