Mutational meltdown or controlled chain reaction: The dynamics of rapid plastome evolution in the hyperdiversity of Poaceae

The study of genomic structural evolution associated with accelerated evolutionary rates that result in avoidance of meltdown and increase biodiversity is becoming ever more possible as the number of available plastomes increases. To more comprehensively analyze rate heterogeneity among monocots and within Poaceae, we sequenced plastomes from four Poaceae species, combined them with publicly available data from ~200 plastomes, and conducted comparative analyses to quantify the pattern of rate heterogeneity between different lineages, functional groups, and periods of evolutionary time. We compared structural differences across the Poaceae to quantify how changes in plastome size correspond to different genomic subunits and the evolution of IR–SC junction boundaries. The substitution rates among ancestral Poaceae were inferred to be exceptionally rapid compared to other monocots but slowed after divergence into extant lineages, which could not be sufficiently explained by positive selection. As such, rapid rates in the ancestral lineage leading to Poaceae might be more closely linked to large-scale structural changes like the loss of ycf1 and ycf2. The total increase in plastome size across Poaceae was positively correlated with the total length of intergenic spacers, tandem repeats, and dispersed repeats as well as large single copy, and inverted repeats (IRs). The continuous evolution of IR–SC junction boundaries was asynchronous with sizes of total genome and subunits across Poaceae. Future work is needed to better understand what factors in ancestral Poaceae evolved to harness such rapid rates of plastome evolution, avoid a mutational meltdown, and escape the stagnation of strong purifying selection as well as if these factors could be utilized to synthetically control rates.     

Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

九种蹄盖蕨科植物配子体的酯酶同工酶分析

本文培养了蹄盖蕨科９个种即中华蹄盖蕨（Ａｔｈｙｒｉｕｍｓｉｎｅｎｓｅ）带岭蹄盖蕨（Ａ．ｄａｌｉｎｇｅｎｓｅ）、多齿蹄盖蕨（Ａ．ｍｕｌｔｉｄｅｎｔａｔｕｍ）（包括青柄和紫柄２种带岭蹄蕨类型）、东北蛾眉蕨（Ｌｕｎａｔｈｙｒｉｕｍｐｙｃｎｏｓｏｒｕｍ）、朝鲜介蕨（Ｄｒｙｏａｔｈｙｒｉｕｍｃｏｒｅａｎｕｍ）、山冷蕨（Ｃｙｓｔｏｐｔｅｒｉｓｓｕｄｅｔｉｃａ）、假冷蕨（Ｐｓｅｕｄｏｃｙｓｔｏｐｔｅｒｉｓｓｐｉｎｕｌｏｓａ）、欧洲羽节蕨（Ｇｙｍｎｏｃａｒｐｉｕｍｄｒｙｏｐｔｅｒｉｓ）和黑鳞短肠蕨（Ａｌａｎｔｏｄｉａｃｒｅｎａｔａ）的配子体为材料,进行酯酶同工酶的分析,以表明它们的种间差异,其中多齿蹄盖蕨的青柄和紫柄两种类型的酶谱存在明显差异,应考虑紫柄为多齿蹄盖蕨的变型。     

超氧化物歧化酶模拟化合物的生物活性研究

根据天然超氧化物歧化酶(SOD)活性部位结构合成了含苯并咪唑的5种配体及其32种分别含Cu（Ⅱ）、Fe（Ⅲ）、Mn（Ⅱ）、Co（Ⅱ）的模拟化合物.经光谱、电化学测试证明这些化合物具有拟S3D活性,其50％抑制率浓度（IC50）为10-6～10-8mol·L-1,催化超氧离子自由基（O-·2）歧化的反应速率常数kq为106～108mol-1·L·s-1.同时观察到几种模拟化合物有抗肿瘤活性或增强水稻抗寒性.     

达斡尔族成人的体格,体型及半个多世纪来的变化

对内蒙古自治区莫力达瓦族３５３名（男１８７,女１６６）２０－６０岁达斡尔族进行了活体观察与测量,总结了达斡尔族的体格特征和类型。并在城乡之间和与半个世纪以前同一地区达斡尔族的体质资料之间进行了比较。     

白玉兰播种苗年生长规律的研究

本文通过对白玉兰一年生播种苗年生长进程的研究,阐明了苗高、地径的年变化规律,并拟合其生长模型,从而为生产上有效采取育苗措施提供科学依据．     

中国种子植物区系定量化研究 V．区系相似性

本文总结了应用相似系数即关联系数进行植物区系相似性分析的现状,指出了存在的问题．然后,从集合论角度讨论了区系相似性、相似关系及其相似系数的实质．作者以为在区系相似性分析中应用Ｒ．Ｒ．Ｓｏｋａｌ和Ｃ．Ｄ．Ｍｉｃｈｅｎｅｒ（１９５８）提出的简单匹配系数比较适宜,同时亦能避免以往区系相似性分析中缺乏可比性及某些“表相”相似等问题．最后,还提出了总体相似系数和类型相似系数二个新概念,以便按照吴征镒教授关于中国植物区系研究的学术思想统一研究各个不同地区植物区系的相似性．对此,作者用了６个区系实例进行了演算说明．     

萌发花生种子子叶肽链内切酶的纯化和性质

萌发花生种子子叶的肽链内切酶经硫酸铵沉淀,ＳｅｐｈａｄｅｘＧ－１００凝胶层析,ＤＥＡＥ－纤维素２３阴离子交换层析和ＤＥＡＥ－ＳｅｐｈａｄｅｘＡ５０层析,得到纯化的酶,该酶有两条同工酶,分子量分别为５８和５５ＫＤ,Ｋｍ为９．９μｍｏｌ／Ｌ,是半胱氨型肽链内切酶（ＥＣ３．４．２２）,对未萌发花生种子的贮藏蛋白没有明显降解作用．     

花生种子高纯度DNA的提取（简报）

花生种子高纯度ＤＮＡ的提取（简报）王艳,何军贤,傅家瑞（中山大学生命科学学院,广州５０２７５）关键词花生;种子;ＤＮＡ;十六烷基三甲基溴化铵ＲＡＰＩＤＡＮＤＥＦＦＩＣＩＥＮＴＰＵＲＩＦＩＣＡＴＩＯＮＯＦＤＮＡＦＲＯＭＰＥＡＮＵＴ（ＡＲＡＣＨＩＳＨＹＰ...     

剂量率等因素对聚乙烯辐照交联的影响

本文研究了聚乙烯塑料在＾６０Ｃｏ－γ射线辐照下,剂量率等因素对交联度的影响,实验结果表明：交联度随辐照强度提高而增加,当交联度相同时,不同的材料需不同的辐照剂量,在相同的辐照条件下,当制备样品的方法不同时,交联度也不同。