The glycosylation of the extracellular loop of β2 subunits diversifies functional phenotypes of BK Channels

Large-conductance Ca²⁺- and voltage-activated potassium (MaxiK or BK) channels are composed of a pore-forming α subunit (Slo) and 4 types of auxiliary β subunits or just a pore-forming α subunit. Although multiple N-linked glycosylation sites in the extracellular loop of β subunits have been identified, very little is known about how glycosylation influences the structure and function of BK channels. Using a combination of site-directed mutagenesis, western blot and patch-clamp recordings, we demonstrated that 3 sites in the extracellular loop of β2 subunit are N-glycosylated (N-X-T/S at N88, N96 and N119). Glycosylation of these sites strongly and differentially regulate gating kinetics, outward rectification, toxin sensitivity and physical association between the α and β2 subunits. We constructed a model and used molecular dynamics (MD) to simulate how the glycosylation facilitates the association of α/β2 subunits and modulates the dimension of the extracellular cavum above the pore of the channel, ultimately to modify biophysical and pharmacological properties of BK channels. Our results suggest that N-glycosylation of β2 subunits plays crucial roles in imparting functional heterogeneity of BK channels, and is potentially involved in the pathological phenotypes of carbohydrate metabolic diseases.     

Genome-wide analysis of codon usage bias patterns in an enterotoxigenic <Emphasis Type="Italic">Escherichia coli</Emphasis> F18 strain

Enterogenic Escherichia coli (ETEC) F18 strains are the main pathogenic bacteria causing severe diarrhea in humans and domestic animals. However, the information about synonymous codon usage pattern of ETEC F18 genome remains unclear. We conducted a genome-wide analysis of synonymous codon usage patterns in the ETEC F18 strain SRA: SAMN02471895. After filtering of the complete genome sequence, 4327 coding sequences were analyzed using multivariate statistical methods to calculate synonymous codon usage patterns and to evaluate the influence of various factors in shaping the codon usage. The mean GC content was 51.38%, with a slight preference for G/C-ending codons. Twenty-two codons were determined as ‘‘optimal codons”. ENC plots showed some of the genes were on or close to the expected curve, while only points with low-ENC values were below the curve. PR2 analysis showed that GC and AT were not used proportionally, suggesting major roles for mutational pressure and natural selection in shaping usage. Neutrality plots showed a significant correlation between GC12 and GC3, suggesting that mutational pressure is responsible for nucleotide composition in shaping the strength of codon usage. Translational selection was the main factor shaping the codon usage pattern of ETEC F18 genome, while other factors such as protein length, GRAVY and ARO values also influenced codon usage to some extent. We analyzed the codon usage pattern systematically and identified the factors shaping codon usage bias in the ETEC F18 genome. Such information further elucidates the mechanisms of synonymous codon usage bias and provides the basis of molecular genetic engineering and evolutionary studies.     

甘蓝型油菜种子中油体的超微结构及蛋白质组分析

以甘蓝型油菜（Brassica napus L.）含油量较高的品种‘ZS11’、含油量中等的品种‘Westar’和‘Topas’以及含油量较低的品种‘ZS10’为实验材料,通过超微结构观察和统计,比较分析不同品种种子中油体形态、大小和数量的差异。研究结果显示,品种‘ZS11’种子子叶细胞油体排列致密,形态较小,大部分油体的直径低于1 μm;而在含油量中等或较低的品种中,种子子叶细胞油体排列均显疏松,其中‘Westar’和‘Topas’的油体较大,而‘ZS10’的油体大小不一。本研究还通过双向电泳分析进一步检测了‘Westar’和‘ZS11’种子中总蛋白和油体蛋白的差异表达情况。结果显示,‘Westar’和‘ZS11’种子总蛋白双向电泳图谱中,表达量具有2倍以上差异的蛋白质点共有57个;其中在‘Westar’中特异表达的种子总蛋白质点有24个,在‘ZS11’中有23个。在上述2个品种油体蛋白双向电泳图谱中,表达量具有2倍以上差异的蛋白质点共有52个,在品种‘Westar’中特异表达的有2个,‘ZS11’中有13个。表明不同含油量的油菜品种种子在油体的结构和蛋白组份上均存在差异。     

An appropriate loading control for western blot analysis in animal models of myocardial ischemic infarction

An appropriate loading control is critical for Western blot analysis. Housekeeping proteins (HKPs), such as β-actin, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and β-tubulin, are commonly used to normalize protein expression. But HKP expression can be impacted by certain experimental conditions, such as ischemic myocardial infarction. This study was undertaken to look for an appropriate loading control for western blot analysis of ischemic myocardium. Myocardial ischemic infarction was induced by left anterior descending coronary artery (LAD) ligation in Rhesus monkeys and C57BL/6 mice. The heart tissue samples from different areas and time points after surgery were subjected to western blot or gel staining. The level of β-actin, GAPDH, β-tubulin, and total protein were tested. The total protein level was consistent in all groups, whereas the protein level of β-tubulin and β-actin were different in all groups. However, the protein level of GAPDH was stable in the Rhesus monkey model. We concluded that total protein was the most appropriate internal control in different stages of myocardial ischemic disease of various animal models. GAPDH is a reliable internal control only for ischemic myocardium of Rhesus monkey.     

Effects of different nutrient sources on plasticity of reproductive strategies in a monoecious species,Sagittaria graminea (Alismataceae)

Varied nutrient sources can influence the plasticity of reproductive strategies in monoecious species differently. We examined the plasticity of sexual and clonal reproductive components in distinct nutrient sources in a monoecious species, Sagittaria graminea Michx. The results showed that for aboveground reproductive components, in rich-phosphorus and low-nitrogen conditions, the species produced more male flowers, whereas female flowers did not significantly increase in number compared to low-phosphorus and low-nitrogen conditions (control). In rich-nitrogen and low-phosphorus conditions, the species produced more flowers, particularly female, and more seeds, compared to the control conditions. In the rich-nitrogen and rich-phosphorus conditions, plants increased male flowers, female flowers, total flower number, synchronously, as well as seed production. For the belowground reproductive components, in the rich-phosphorus conditions, the plants produced bigger corms than in the rich-nitrogen and control conditions, which further enhanced their competitiveness against companion species. In rich-nitrogen conditions, the plants produced more medium and small corms, and relatively more and longer stolons, which were useful in expansion and invasion of more space. Furthermore, the species displayed trade-off relationships between the aboveground and belowground reproductive components in unbalanced nutrient conditions (add-N or add-P). However, in low nutrient levels (control) or in nutrient abundant (add-N + P) conditions, there were no significant trade-off relationships between the aboveground and belowground reproductive components, based on quantities.     

Survival and reproduction of plant species in the Qinghai–Tibet Plateau

The Qinghai–Tibet Plateau (QTP) is the highest and largest plateau in the world. It covers correspondingly wide geological, topographical, and climatic gradients, and thus hosts greater biodiversity than surrounding lowlands and other high elevation regions. Due to its extreme environmental and biological diversity, the QTP is an ideal region for studying adaptations of plant species under harsh environmental conditions at multiple evolutionary levels. Many recent ecological studies have revealed functions of distinctive morphological features of various plants in the region that improve their reproductive success. Examples include large and showy bracts, hairy inflorescences, and drooping flowers. Numerous other investigations have examined QTP plants' sexual systems, patterns of biomass allocations, and biotic interactions. This paper summarizes recent advances in understanding of morphological adaptations, plant–plant interactions, plant–pollinator interactions, floral color patterns, pollination adaptations, and resource allocation patterns of alpine plants of the QTP. The overall aim is to synthesize current knowledge of the general mechanisms of plant survival and reproduction in this fascinating region.     

初代和继代培养葡萄试管苗的内源IAA、ZRs和ABA含量变化及其与生根的关系

葡萄品种皇家秋天与藤稔初代试管苗在第10天(根原基发生)时内源IAA和ABA含量达最低点后上升;ZRs含量达最高值后下降.皇家秋天继代试管苗的IAA在第8天(根原基发生)时达最低点,而后上升达稳定值;ZRs含量达最高值后下降;ABA含量降至最低点后急剧上升,在第10天(生根时)达最高值,持续4 d后又下降.藤稔继代苗在第6天(根原基发生)时IAA含量最低,后上升,持续到第12天后又下降;ZRs含量达最高值后快速下降,至第12天达稳定状态;ABA含量达最低值后缓慢上升,第10天(生根)达最高点后又下降.     

鞘内注射M受体和GDNF反义寡脱氧核苷酸抑制吗啡戒断大鼠蓝斑c—Fos表达

The antisense approach and immunohistochemistry were used to study the effects of different muscarinic receptor (M) subtypes and glial cell derived neurotrophic factor (GDNF) on the scores of morphine-withdrawal syndrome and the expression of c-Fos in locus coeruleus (LC). Intrathecal injection of M2 receptor antisense oligonucleotides (M2AS-oligo) or GDNF antisense oligonucleotides (GDNFAS-oligo) decreased the scores of morphine withdrawal syndrome. The expression of c-Fos positive neurons in the LC increased in morphine-dependent rats and increased to a greater extent after the injection of naloxone (4mg/kg, ip) in morphine dependent rats. Intrathecal injection of M2AS-oligo or GDNFAS-oligo inhibited the increase of c-Fos expression in LC during morphine withdrawal, but there was no effect in case of M1AS-oligo. The results suggest that M2 receptor of spinal cord mediates the neural activation of LC during morphine withdrawal. And the interaction between neurons and glial cells may be involved in the ascending activation process.