Spatial distribution as a measure of conservation needs: an example with Asiatic black bears in south-western China

Aim To create a fine‐scale map of the distribution of Asiatic black bears, identify landscape variables affecting the spatial range of this species and assess population trends using presence–absence data and opinions of local villagers. Location Sichuan Province, south‐western China. Methods We divided the province into 15 × 15 km cells, stratified them by forest cover, elevation and road density and randomly selected 494 cells (21% of province) for surveys. In each cell, we interviewed villagers and ground‐verified their reports of bear presence. We ground‐truthed reports of bear absence by conducting transects for bear sign in the best available habitat. We used logistic regression to identify key variables affecting presence of bears and predict their occurrence in unsampled cells. Results We detected bears in 360 cells (73%). Models correctly predicted bear occurrence in 90.3% of cells where we detected bears and 84.5% of sampled cells where bears were absent. Models predicted 42.7% of Sichuan to be occupied by bears. Bear occurrence was strongly related to forest cover throughout the province. Roads had a negative effect in western region of province. Agricultural lands had a negative effect only when they were distant from forests. Villagers were accurate in their knowledge of bear presence or absence. Interviewed villagers (n = 1816) thought that bears were increasing in 32%, stable in 10%, and decreasing in 58% of cells with bears. Where bear populations were perceived to be declining, villagers identified poaching as the most common cause. Main conclusions Our fine‐scale distribution map can be used for future monitoring and the key landscape factors related to occupancy by bears can be used in management plans for this species. Interviewing local villagers is an efficient and reliable means of assessing distribution, and changes therein, for animals such as bears that often interact with people and leave obvious signs.     

PEG介导的原生质体融合方法的改进及注意事项

结合科研工作对《细胞工程》教材中PEG介导的原生质体融合方法进行了改进,并对实验过程中注意事项进行了阐述。     

Production and characterization of LEA29Y,a variant of cytotoxic T-lymphocyte antigen 4-immunoglobulin,in <Emphasis Type="Italic">Pichia pastoris</Emphasis>

Blocking the CD28/B7 costimulatory pathway is a promising strategy in the treatment of graft rejection, graft-versus-host disease and autoimmune diseases. LEA29Y, a high-affinity variant of cytotoxic T-lymphocyte antigen 4-immunoglobulin (CTLA4Ig), is a more potent inhibitor of the interaction between CD28 and B7 than is CTLA4Ig. In a previous study, LEA29Y was produced in a mammalian cell system, which is time-consuming and expensive. To obtain LEA29Y more efficiently and cost effectively, we attempted to produce LEA29Y using a Pichia pastoris expression system. The gene encoding LEA29Y, with an additional 6-His tag at the N-terminus, was cloned into the yeast vector pPIC9K and expressed in the P. pastoris strain GS115. Under the optimized induction conditions for protein expression (inoculum density, OD₆₀₀ = 80; methanol concentration added daily, 1.0–3.0%; induction time point, 72–96 h; culture medium pH = 6.0), the yield of purified LEA29Y was approximately 30 mg l⁻¹ by one-step Ni-agarose affinity chromatography. PNGase F treatment showed the purified LEA29Y to be post-translational modified by N-linked glycosylation. In biological function assays, LEA29Y expressed in P. pastoris demonstrated specific binding to B7-1/B7-2-positive Raji cells and also suppressed lymphocyte proliferation in a dose-dependent manner. These results suggest that LEA29Y produced in P. pastoris is biologically active and will be useful for experimental therapy on immunotherapy for transplant rejection and autoimmune diseases.     

人工合成甘蓝型油菜早期世代及其亲本对盐胁迫的生理响应

以白菜‘矮抗青’(基因组AA)和‘中花芥蓝’(基因组CC)及其人工合成异源四倍体甘蓝型油菜(AACC)的早期世代(F1~F4)为实验材料,采用水培方法分别比较它们在100、200mmol/L NaCl处理下的生理指标差异。结果表明:(1)在盐胁迫条件下,‘中花芥蓝’植株的生物量、脯氨酸和叶绿素含量、抗氧化酶(SOD、POD、CAT)活性均最低,而相对电导率、MDA含量则最高。在100mmol/L NaCl处理下,F2代植株的生物量、叶绿素含量、SOD活性最大,MDA含量最低;在200mmol/L NaCl处理下,F4代的生物量、叶绿素含量、POD活性最大,MDA含量最低。研究发现,亲本‘矮抗青’的耐盐特性高于亲本‘中花芥蓝’,它们的杂种后代(异源四倍体)遗传了AA基因组的耐盐特性,从而比二倍体亲本具有更强的抵御盐胁迫的能力。     

淡水湿地种子库的小尺度空间格局

以长江中下游淡水湿地湖里沼泽为对象,研究了种子库在小尺度空间范围的水平分布格局。在沼泽中选择地表植被分布比较均一的16m×4m大小的方形区域,按1m间隔获取64个内径7·8cm、深5cm的圆柱状土样,通过幼苗萌发法鉴定每个土样的种子库组成。采用2个格局指数(离散系数和Lloyd平均拥挤指数)以及Moran空间自相关系数分析了种子库中优势种的空间分布格局。结果显示种子库由17个物种组成,多年生的锐棱荸荠(Eleocharisacutangula)和龙师草(E·tetraqueter)是种子库中密度最大的物种。两个格局指数显示7个分布频率大于10%的物种的种子全部为聚集分布。MoransI统计分析显示其中只有3个物种为显著的正的空间自相关,表明这3个物种的种子斑块大小超过了目前的两个取样单位之间的距离(1m),而其它4个物种的种子斑块则小于这个尺度。     

Recent insights into cotton functional genomics: progress and future perspectives

Functional genomics has transformed from futuristic concept to well‐established scientific discipline during the last decade. Cotton functional genomics promise to enhance the understanding of fundamental plant biology to systematically exploit genetic resources for the improvement of cotton fibre quality and yield, as well as utilization of genetic information for germplasm improvement. However, determining the cotton gene functions is a much more challenging task, which has not progressed at a rapid pace. This article presents a comprehensive overview of the recent tools and resources available with the major advances in cotton functional genomics to develop elite cotton genotypes. This effort ultimately helps to filter a subset of genes that can be used to assemble a final list of candidate genes that could be employed in future novel cotton breeding programme. We argue that next stage of cotton functional genomics requires the draft genomes refinement, re‐sequencing broad diversity panels with the development of high‐throughput functional genomics tools and integrating multidisciplinary approaches in upcoming cotton improvement programmes.     

An efficient gene disruption method using a positive–negative split-selection marker and <Emphasis Type="Italic"> Agrobacterium tumefaciens</Emphasis>-mediated transformation for <Emphasis Type="Italic">Nomuraea rileyi</Emphasis>

Targeted gene disruption via Agrobacterium tumefaciens-mediated transformation (ATMT) and homologous recombination is the most common method used to identify and investigate the functions of genes in fungi. However, the gene disruption efficiency of this method is low due to ectopic integration. In this study, a high-efficiency gene disruption strategy based on ATMT and the split-marker method was developed for use in Nomuraea rileyi. The β-glucuronidase (gus) gene was used as a negative selection marker to facilitate the screening of putative transformants. We assessed the efficacy of this gene disruption method using the NrCat1, NrCat4, and NrPex16 genes and found that the targeting efficiency was between 36.2 and 60.7%, whereas the targeting efficiency using linear cassettes was only 1.0–4.2%. The efficiency of negative selection assays was between 64.1 and 82.3%. Randomly selected deletion mutants exhibited a single copy of the hph cassette. Therefore, high-throughput gene disruption could be possible using the split-marker method and the majority of ectopic integration transformants can be eliminated using negative selection markers. This study provides a platform to study the function of genes in N. rileyi.     

The emerging role of microRNA-4487/6845-3p in Alzheimer’s disease pathologies is induced by Aβ25–35 triggered in SH-SY5Y cell

Background

Accumulation of amyloid β-peptide (Aβ) is implicated in the pathogenesis and development of Alzheimer’s disease (AD). Neuron-enriched miRNA was aberrantly regulated and may be associated with the pathogenesis of AD. However, regarding whether miRNA is involved in the accumulation of Aβ in AD, the underlying molecule mechanism remains unclear. Therefore, we conduct a systematic identification of the promising role of miRNAs in Aβ deposition, and shed light on the molecular mechanism of target miRNAs underlying SH-SY5Y cells treated with Aβ-induced cytotoxicity.

Results

Statistical analyses of microarray data revealed that 155 significantly upregulated and 50 significantly downregulated miRNAs were found on the basis of log2 | Fold Change |?≥?0.585 and P?< 0.05 filter condition through 2588 kinds of mature miRNA probe examined. PCR results show that the expression change trend of the selected six miRNAs (miR-6845-3p, miR-4487, miR-4534, miR-3622-3p, miR-1233-3p, miR-6760-5p) was consistent with the results of the gene chip. Notably, Aβ_25–35 downregulated hsa-miR-4487 and upregulated hsa-miR-6845-3p in SH-SY5Y cell lines associated with Aβ-mediated pathophysiology. Increase of hsa-miR-4487 could inhibit cells apoptosis, and diminution of hsa-miR-6845-3p could attenuate axon damage mediated by Aβ_25–35 in SH-SY5Y.

Conclusions

Together, these findings suggest that dysregulation of hsa-miR-4487 and hsa-miR-6845-3p contributed to the pathogenesis of AD associated with Aβ25–35 mediated by triggering cell apoptosis and synaptic dysfunction. It might be beneficial to understand the pathogenesis and development of clinical diagnosis and treatment of AD. Further, our well-designed validation studies will test the miRNAs signature as a prognostication tool associated with clinical outcomes in AD.

     

Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer

Background

Bladder cancer (BC) is the most common cancer of the urinary bladder and upper tract, in which the clinical management is limited. AURKA (aurora kinase A) has been identified as an oncogene in cancer development; however, its potential role and underlying mechanisms in the progression of BC remain unknown.

Results

In this study, we evaluated Aurora kinase A (AURKA) expression in patient samples by performing gene expression profiling, and found that AURKA expression levels were significantly higher in BC tissues than in normal tissues. Increased AURKA in BC was strongly associated with stage and grade. Moreover, BC patients with elevated AURKA achieved poor overall survival rates. The experiments in vitro comprehensively validated the critical role of AURKA in promoting BC cell proliferation using the methods of gene overexpression and gene silencing. Furthermore, we proved that AURKA inhibitor MLN8237 arrested BC cell growth and induced apoptosis.

Conclusions

These findings implicate AURKA acting as an effective biomarker for BC detection and prognosis, as well as therapeutic target.

     

紫杉醇替代资源研究进展

紫杉醇是近30年来从植物中筛选出的首选抗癌药物,已被美国的FDA批准治疗晚期卵巢癌和转移性乳腺癌。由于资源奇缺已出现严重供给危机。本文综述了近3年来紫杉醇替代资源研究的新进展,主要包括组织培养、遗传转化、化学合成和紫杉霉等方面的新成就。