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71.
Mio Takeuchi Takeshi Komai Satoshi Hanada Hideyuki Tamaki Susumu Tanabe Yoshinori Miyachi 《Geomicrobiology journal》2013,30(2):104-118
Microbial communities in ancient marine sediments composed of clay and silt obtained from the terrestrial subsurface were phylogenetically analyzed based on their 16S rRNA gene sequences. Chloroflexi and Miscellaneous Crenarchaeotic Group were predominant in bacterial and archaeal clone libraries, respectively. Of 44 operational taxonomic units (OTUs) that had close relatives in the database, 30 were close to sequences obtained from marine environments. Some sequences belonged to the candidate groups JS1, ANME-I, and Marine Benthic Group-C, which are typically found in marine sediments. Low chloride concentrations in the sediments suggest that these marine-affiliated sequences may not reflect currently active microbial communities. Our results indicate the existence of long-term preserved DNA or descendants of ancient oceanic microbial components in subsurface muddy sediments in a temperate region, which may reflect indigenous population of paleoenvironments. 相似文献
72.
Kazuyuki Nakamura Hirofumi Kodera Tenpei Akita Masaaki Shiina Mitsuhiro Kato Hideki Hoshino Hiroshi Terashima Hitoshi Osaka Shinichi Nakamura Jun Tohyama Tatsuro Kumada Tomonori Furukawa Satomi Iwata Takashi Shiihara Masaya Kubota Satoko Miyatake Eriko Koshimizu Kiyomi Nishiyama Mitsuko Nakashima Yoshinori Tsurusaki Noriko Miyake Kiyoshi Hayasaka Kazuhiro Ogata Atsuo Fukuda Naomichi Matsumoto Hirotomo Saitsu 《American journal of human genetics》2013
73.
A genomic fragment containing the dihydroflavonol 4-reductase B (DFR-B) gene was cloned from the sweet potato (Ipomoea batatas) and its nucleotide sequence was analyzed. The exons and flanking regions were highly homologous to those of previously reported DFR-B genes of the Japanese morning glory, whereas the introns and the intergenic region were less conserved. In addition to the sequences of three miniature inverted-repeat transposable elements (MITEs) and one direct repeat previously reported in the DFR-B gene of Japanese morning glory, two mobile element-like sequences were newly identified in the sweet potato DFR-B gene. At least four allelic sequences were found to exist by amplification of the DFR-B gene from various sweet potato cultivars. One of these allelic sequences had a 2-kb deletion in the intergenic region and was observed in the cultivars with high anthocyanin content in their storage roots. 相似文献
74.
Nucleotide-induced conformational changes of PMP70, an ATP binding cassette transporter on rat liver peroxisomal membranes 总被引:2,自引:0,他引:2
Kashiwayama Y Morita M Kamijo K Imanaka T 《Biochemical and biophysical research communications》2002,291(5):1245-1251
Nucleotide-induced conformational changes of the 70-kDa peroxisomal membrane protein (PMP70) were investigated by means of limited-trypsin digestion. Rat liver peroxisomes preincubated with various nucleotides were subsequently digested by trypsin. The digestion products were subjected to immunoblot analysis with an anti-PMP70 antibody that recognizes the carboxyl-terminal 15 amino acids of the protein. PMP70 was initially cleaved in the boundary region between the transmembrane and nucleotide-binding domains and a carboxyl-terminal 30-kDa fragment resulted. The fragment in turn was progressively digested at the helical domain between the Walker A and B motifs. The fragment, however, could be stabilized with MgATP or MgADP. In contrast to MgATP, MgATP-gammaS protected whole PMP70 as well as the fragment. The 30-kDa fragment processed by trypsin was recovered in the post-peroxisomal fraction as a complex with a molecular mass of about 60 kDa irrespective of the presence of MgATP. These results suggest that PMP70 exists as a dimer on the peroxisomal membranes and the binding and hydrolysis of ATP induce conformational changes in PMP70 close to the boundary between the transmembrane and nucleotide binding domains and the helical domain between the Walker A and B motifs. 相似文献
75.
Tohno Y Takano Y Tohno S Moriwake Y Minami T Takakura Y Yuri K 《Biological trace element research》2000,74(1):1-9
To elucidate changes of human tendons with aging, the authors studied age-related changes of elements in human Achilles’ tendons
by inductively coupled plasma-atomic emission spectrometry. The subjects consisted of seven men and seven women, ranging in
age from 61 to 97 yr. It was found that the content of calcium increased progressively with aging in the Achilles’ tendons,
whereas the contents of phosphorus and magnesium decreased gradually with aging. The previous investigations demonstrated
that the content of calcium and phosphorus increased progressively with aging in most, but not all, human tissues, except
for the bones. In ligaments, such as the anterior cruciate ligament and the ligament of the head of the femur, which are histologically
similar to the Achilles’ tendon, it was previously found that both the contents of calcium and phosphorus increased with aging
in the ligaments. It should be noted that the content of phosphorus in the Achilles’ tendons decreased during the aging process.
In addition, it was found that there was a very high direct correlation between phosphorus and magnesium contents in the tendons,
but not between calcium and phosphorus contents. 相似文献
76.
We have succeeded in establishing a method to reproducibly immortalize human T cells by oncogene(s) transfection (Alam, 1997).
This study was based on our previous discoveries that these immortalized T cell lines contained T cells which showed cytotoxicity
against K562 cells in MHC-nonrestricted manner. Then we attempted to obtain human T cell clones exhibiting natural killer-like
activity. Here, we tried to establish clones from these immortalized T cell lines by limiting dilution after stimulation with
K562 cells, and then obtained 16 T cell clones. Two clones among them maintained their stability and showed vigorous growth
phenotype. Thus we selected these two clones for further analysis. One is derived from the T cell line transfected with oncogenes
ras and fos, the other is from the T cell line transfected with myc and fos. Both clones were demonstrated to be CD4+ T cells, indicating that CD4+ T cells were preferably expanded from T cell lines immortalized by oncogene transfection. These two clones showed cytotoxicity
against K562 cells, indicating that these two T cell clones still retain a natural killer-like activity of killing target
cells of K562 cells in a MHC-nonrestricted manner. The natural killer-like activity of the T cell clones was shown to be stable
for more than 2 yr when cultured in the presence of IL-2, indicating that introduction of two oncogenes such as ras/fos or
myc/fos resulted in the acquisition of infinite replicative life-span but not in transformational alteration of cellular function.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
77.
Sato Y Suzuki H Sato T Suda T Yoda T Iwakura Y Chida D 《Biochemical and biophysical research communications》2010,403(3-4):253-257
Glucocorticoids are extensively used in anti-inflammatory therapy and are thought to contribute to the steady-state regulation of hematopoiesis and lymphopoiesis. We have previously established MC2R(-/-) mice, a model of familial glucocorticoid deficiency, that show several similarities to patients with this disease, including undetectable levels of corticosterone, despite high levels of ACTH and unresponsiveness to ACTH. In this study, we analyzed the possible roles of endogenous glucocorticoids in hematopoiesis and lymphopoiesis in MC2R(-/-) and CRH(-/-) mice as models of chronic adrenal insufficiency. Our analysis of total peripheral blood cell counts revealed that the number of lymphocytes was increased and the number of erythrocytes was slightly, but significantly, decreased in MC2R(-/-) mice. Numbers of immature double negative (CD4(-) CD8(-)) thymocytes, transitional type 1 B cells in the spleen, and pre-B cells in the bone marrow, were significantly increased in MC2R(-/-) mice, suggesting that endogenous glucocorticoids contribute to steady-state regulation of lymphopoiesis. Oral glucocorticoid supplementation reversed peripheral blood cell counts and reduced numbers of T and B cells in the thymus and the spleen. T cells in the thymus and B cells in the spleen were also increased in CRH(-/-) mice, another animal model of chronic adrenal insufficiency. MC2R(-/-) mice were sensitive to age-related thymic involution, but they were resistant to fasting-associated thymic involution. Our data support the idea that endogenous glucocorticoids contribute to stress-induced as well as steady-state regulation of hematopoiesis and lymphopoiesis. 相似文献
78.
Hisayuki Oda Yoshinori Hatakeyama Yuuichi Yamamoto Kazuyo Enomoto Tomoaki Shigano Hidetoshi Iwano 《Applied Entomology and Zoology》2014,49(2):213-221
The fungus Beauveria bassiana (Balsamo) Vuillemin has previously been classified using morphological characteristics, but morphology cannot reveal the phylogenetic relationships among conventionally classified strains. High levels of homology have been found in gene sequences among various B. bassiana strains, complicating the determination of their evolutionary relationships. To elucidate phylogenetic relationships among conventionally known Beauveria species, we analyzed 57 major strains of B. bassiana and 3 strains of B. brongniartii (Saccardo) Petch isolated from Japan by analysis of internal transcribed spacer (ITS) sequences and genome profiling (GP) based on temperature gradient gel electrophoresis of random PCR products. The ITS sequence analysis placed the 57 conventional B. bassiana strains into two clusters, B. bassiana and Beauveria pseudobassiana Rehner et Humber. In contrast, GP analysis produced five clusters of B. bassiana strains that included B. pseudobassiana clusters. These results suggested that GP was more accurate than ITS sequence analysis for determining phylogenetic relationships within B. bassiana. In addition, our findings suggested that conventional strains of B. bassiana isolated from Japan include both B. bassiana and B. pseudobassiana groups. 相似文献
79.
Takashi Tsuchiya Atsushi Ichimura Yoshinori Nagai 《Cell biochemistry and biophysics》1987,11(1):109-122
Correlations in the baker map and the tent map as examples of one-dimensional, fully developed chaos are considered. It is
shown, utilizing symbolic dynamical systems derived from these maps, that the vanishing second-order correlation function
is not sufficient to guarantee uncorrelatedness. Importance of the higher-order, especially third-order, correlation functions
is emphasized for chaotic systems. In search of the quantities that grasp correlational behaviors as a whole in chaotic systems,
it is proposed to use the fixed-separation correlation integral, which is a modified quantity of the usual correlation integral
devised to calculate the fractal dimension of strange attractors, for these maps. It is shown that the new quantity contains
all the even-number orders of autocorrelation function that are commonly considered. 相似文献
80.
Ken Sasaki Tohru Tanaka Yoshinori Nishizawa Mitsunori Hayashi 《Applied microbiology and biotechnology》1990,32(6):727-731
Summary For the production of a herbicide, 5-amino-levulinic acid (ALA), from anaerobic digestion liquor, the utilization of the photosynthetic bacterium, Rhodobacter sphaeroides was examined. This bacterium could produce ALA extracelularly from this liquor with the addition of levulinic acid (LA), an inhibitor of ALA dehydratase (ALAD), and glycine, a precursor of ALA biosynthesis in the Shemin pathway. Succinate (another precursor) addition was unnecessary for ALA production. When repeated additions of LA were made together with glycine ALA production was significantly enhanced. However, above three additions of LA, ALA production was not further enhanced. The maximum value of ALA production attained was 4.2 mM (0.63 g/ 1), which was over double that of other ALA producers such as Chlorella vulgaris. Propionic acid was predominantly utilized compared with other lower fatty acids, suggesting that this might be converted to ALA via succinyl-coenzyme A (CoA) in the methylmalonyl-CoA pathway.Offprint requests to: Y. Nishizawa 相似文献