Nucleotide diversity of mitochondrial DNAs between the swamp and the river types of domestic water buffaloes,Bubalus bubalis,based on restriction endonuclease cleavage patterns

Cleavage patterns of mitochondrial DNAs (mtDNAs) by 15 restriction endonucleases were analyzed for 10 swamp and 13 river types of domestic water buffaloes. Digestions with nine enzymes exhibited polymorphisms giving two or three kinds of cleavage patterns. Five mtDNA types were identified, three types in the swamp buffaloes of the Philippines, Vietnam, and Indonesia (S-types) and two types in the river buffaloes of Bangladesh and Pakistan (R-types). Nucleotide diversities ranged from 0.2 to 0.6% within the S- and R-types and from 1.9 to 2.4% between the R-types and the S-types. These values indicated that R-type and S-type mtDNAs differentiated at thesubspecific level of other mammalianspecies reported. The possibility of polyphyletic domestication in different places is discussed for the origin of two distinct types of domestic water buffaloes.     

A sensitive method to screen for hydroxyl radical scavenging activity in natural food extracts using competitive inhibition ELISA for 8-hydroxy deoxyguanosine

Summary Representative endogenous antioxidants and natural food extracts were screened for hydroxyl radical scavenging activity by an ELISA. Whereas conventional assays for hydroxyl radical scavenging activity use either spin traps following the induction of Fenton reaction or measure thiobarbituric acid-reactive substances, this assay measures 8-hydroxy deoxyguanosine liberated from the hydroxylation of deoxyguanosine by Cu²⁺/ascorbate system.     

Simultaneous effect of calcium,magnesium, copper and cobalt ions on sapogenin steroids content in callus cultures of Agave amaniensis

The simultaneous effect of calcium, cobalt, copper and magnesium ions and their interactions on growth and sapogenin steroids accumulation in callus cultures of Agave amaniensis was studied by using a central composite second-order rotatable design. The absence of calcium ions in media increased the sapogenin steroid content, while relatively high concentration of magnesium, cobalt and copper ions simultaneously inhibited the sapogenin steroid formation. This revised version was published online in June 2006 with corrections to the Cover Date.     

Identification of regions responsible for the function of the plant K+ channels KAT1 and AKT2 in Saccharomyces cerevisiae and Xenopus laevis oocytes

The Arabidopsis K⁺ channel KAT1 complements in K⁺-limited medium the growth of the K⁺ uptake defective Saccharomyces cerevisiae mutant strain CY162, while another K⁺ channel, AKT2, does not. To gain insight into the structural basis for this difference, we constructed 12 recombinant chimeric channels from these two genes. When expressed in CY162, only three of these chimeras fully rescued the growth of CY162 under K⁺-limited conditions. We conclude that the transmembrane core region of KAT1 is important for its activity in S. cerevisiae. This involves not only the pore region but also parts of its voltage-sensor domain.     

Experimental transmission and tissue tropism of Macrobrachium rosenbergii nodavirus (MrNV) and its associated extra small virus (XSV)

White tail disease (WTD) was found to be a serious problem in hatcheries and nursery ponds of Macrobrachium rosenbergii in India. The causative organisms have been identified as M. rosenbergii nodavirus (MrNV) and its associated extra small virus (XSV). Experimentally transmitted to healthy animals, they caused 100% mortality in post-larvae but failed to cause mortality in adult prawns. The RT-PCR assay revealed the presence of both viruses in moribund post-larvae and in gill tissue, head muscle, stomach, intestine, heart, hemolymph, pleopods, ovaries and tail muscle, but not in eyestalks or the hepatopancreas of experimentally infected adult prawns. The presence of these viruses in ovarian tissue indicates the possibility of vertical transmission. Pleopods have been found to be a suitable organ for detecting these viruses in brooders using the RT-PCR technique.     

Carbon stock assessment for a forest-to-coffee conversion landscape in Sumber-Jaya (Lampung, Indonesia): from allometric equations to land use change analysis

The change in stored carbon (C) stocks was assessed for a 700 km~2 area where forestcover decreased from 60% to 10% in the last 30 years. At the same time, the area under coffee increased from 7% to 70% with a gradual evolution from open "sun coffee" systems to multi-strata "shade coffee" systems that provide a partial compensation for C loss. The use of a generic tropi-cal forest rather than tree-specific allometric equation can lead to substantial (up to 100%) overes-timates of aboveground biomass depending on wood density and tree shape. The shoot: root ratio (biomass) of coffee shifted with age, from the 4∶1 value often assumed for tropical trees to 2∶1.Annual aboveground C stock accumulation rates during the establishment stage after slash-and-burn land clearing were 1, close to 2 or 3.5 Mg C ha~(-1)a~(-1) for sun coffee, shade coffee and fallowregrowth, respectively. Forest remnants, shade coffee and sun coffee had soil C stocks in the up-per 30 cm of the soil that were 79%, 60% or 45%, respectively, of the values expected for primary forest in Sumatra. Total C stock (time averaged, above-0.3 m in the soil) for forest, shade and sun coffee was 262, 82 and 52 Mg C ha~(-1), respectively. In the 1970-1984 period, while forest cover was reduced from 59.5% to 19.7%, the landscape lost on average 6.8 Mg C ha~(-1) a~(-1). In the1984-2000 period forest cover was further reduced to 12.6%, but the landscape lost only 0.39 MgC ha~(-1) a~(-1), as forest loss was partially compensated by an increase in shade coffee systems. Conversion of all current sun coffee to shade coffee systems while protecting the remaining forest,could increase average landscape level C stocks by 10 Mg ha~(-1) over a time frame of say 20 years,or 0.5 Mg C ha~(-1) a~(-1).     

Pedagogical effectiveness of innovative teaching methods initiated at the Department of Physiology, Government Medical College, Chandigarh

Modern teaching trends in medical education exhibit a paradigm shift from the conventional classroom teaching methods adopted in the past to nonconventional teaching aids so as to encourage interactive forms of learning in medical students through active participation and integrative reasoning where the relationship of the teacher and the taught has undergone tremendous transformation. Some of the nonconventional teaching methods adopted at our department are learning through active participation by the students through computer-assisted learning (CD-ROMs), Web-based learning (undergraduate projects), virtual laboratories, seminars, audiovisual aids (video-based demonstrations), and "physioquiz."     

Identification of the calmodulin binding domain of alpha-fodrin and implications for folding

A cDNA clone producing a protein that binds calmodulin has been isolated from a mouse macrophage library. The cDNA was sequenced and identified as coding for fodrin. By deleting part of the sequence, the calmodulin binding domain was located. The site is situated on repeat 11 of fodrin probably on its extra arm. This part of the sequence exhibits great similarity to other calmodulin binding proteins. Analysis of the sequence and spatial structure of calmodulin revealed a domain which is quite complementary to the sequence identified on fodrin. These results provide a new insight into the structure of fodrin and consequently into the structure of proteins of the spectrin family. A model for the general folding of these molecules is proposed, involving a simple three-layer folding. The structure was further corroborated by analysis of charge distribution in the vicinity of the calmodulin binding site. The folding we propose is in good agreement with digestion experiments and explains observations in diseases resulting from mutations of human spectrin.     

Prostaglandins, not cyclic GMP, inhibit oxytocinase isoenzymes from human amniotic fluid in vitro

Two isoenzymes of oxytocinase (EC 3.4.11.3) activity were fractionated from human amniotic fluid samples between the 14th and 22nd weeks of gestation by Ultrogel acrylamide-agarose gel filtration and partially characterized. The isoenzymes were competitively inhibited by PGE₁, PGE₂ and PGF_2α more at pH 6.2 than at pH 6.8, whereas cyclic GMP (cGMP) and its 8-bromo derivative had no effect at either pH. The implications of these findings are discussed and it is suggested that since the activity of amniotic fluid oxytocinases is very low or minimal at or near term, inhibition of these by prostaglandins may not have physiological significance in the initiation of human parturition.