Developing reagents and conditions to induce mesoderm subsets from ES cells

Embryonic stem (ES) cell differentiation can serve as a model to investigate early stages of development. Nishikawa and colleagues, in a recent issue of Stem Cells (Era et al., 2007), have used selectable markers to detect lineage-specific gene expression and dissect the induction of mesoderm subsets in ES cell cultures.     

Regulation of the external mycoflora of the giant Madagascar hissing-cockroach,gromphadorhina portentosa, by its mite associate,gromphadorholaelaps schaeferi, and its implications on human health

The giant Madagascar hissing-cockroach,Gromphadorhina portentosa, and its mite associate,Gromphadorholaelaps schaeferi, constitute an intimate commensalistic symbiosis. While the mite’s very survival is dependent by feeding on cockroach saliva and associated organic debris, the degree that the cockroach benefits from this association is unclear. We investigated the mite’s potential role at regulating surface fungi on the exoskeletons of this insect. Numbers of fungal isolates that resulted were compared between captive-bred cockroaches with and without mites. The mycoflora of both groups consisted of common molds (Alternaria sp.,Aspergillus sp.,Cladosporium sp.,Geotrichum sp.,Mucor sp.,Penicillium sp.,Rhizopus sp.,Trichoderma sp.). The presence of mites reduced the number of isolates by 1/2 in mature females, 1/3 in males, and 1/4 in sixth (final) instar nymphs. Fungus levels continued to drop when mite-free cockroaches were artificially supplemented with mites. A direct correlation was detected between mites and the reduction in the quantity of surface molds up to 20 mites per cockroach. The addition of more mites above 20 per cockroach, even 4x more, had a minimal, but still reducing, effect. Mites regulated all types of fungi, not just a select few taxa. We propose that mites reduce the mycoflora not because they consume fungi, but because mites and molds compete for the same resources in an ecological niche, saliva and organic debris that accumulate in between cockroach’s legs. Cockroaches reared in captivity do not apparently benefit by the removal of surface molds by mites, lending support for a commensalistic symbiosis. This cockroach species has been linked to severe allergic reactions in children, in part, because it harbors antagonistic molds. GivenG. schaeferi’s regulatory role at suppressing fungi, these mites could conceivably impose a small indirect, albeit beneficial role to humans by reducing the amount of fungal inoculum (conidia) that might otherwise be inhaled.     

Anonymous nuclear markers for Malagasy plated lizards (Zonosaurus)

We report the development of 18, single-copy, anonymous nuclear loci from the Malagasy plated lizard Zonosaurus madagascariensis. More than 140 clones from a genomic library were examined and 38 potential loci tested across both closely and distantly related lizards. Of the 18 loci reported here, more than half (10) work in closely related zonosaurines although only one successfully amplified a homologous fragment in the distantly related iguanid (Oplurus). Sequences of these loci revealed a high frequency of single nucleotide polymorphisms, supporting previous reports of high levels of intraspecific variation in lizards.     

Chemokine Coreceptor Signaling in HIV-1 Infection and Pathogenesis

Binding of the HIV-1 envelope to its chemokine coreceptors mediates two major biological events: membrane fusion and signaling transduction. The fusion process has been well studied, yet the role of chemokine coreceptor signaling in viral infection has remained elusive through the past decade. With the recent demonstration of the signaling requirement for HIV latent infection of resting CD4 T cells, the issue of coreceptor signaling needs to be thoroughly revisited. It is likely that virus-mediated signaling events may facilitate infection in various immunologic settings in vivo where cellular conditions need to be primed; in other words, HIV may exploit the chemokine signaling network shared among immune cells to gain access to downstream cellular components, which can then serve as effective tools to break cellular barriers. This virus-hijacked aberrant signaling process may in turn facilitate pathogenesis. In this review, we summarize past and present studies on HIV coreceptor signaling. We also discuss possible roles of coreceptor signaling in facilitating viral infection and pathogenesis.     

A gross anatomy ontology for hymenoptera

Hymenoptera is an extraordinarily diverse lineage, both in terms of species numbers and morphotypes, that includes sawflies, bees, wasps, and ants. These organisms serve critical roles as herbivores, predators, parasitoids, and pollinators, with several species functioning as models for agricultural, behavioral, and genomic research. The collective anatomical knowledge of these insects, however, has been described or referred to by labels derived from numerous, partially overlapping lexicons. The resulting corpus of information--millions of statements about hymenopteran phenotypes--remains inaccessible due to language discrepancies. The Hymenoptera Anatomy Ontology (HAO) was developed to surmount this challenge and to aid future communication related to hymenopteran anatomy. The HAO was built using newly developed interfaces within mx, a Web-based, open source software package, that enables collaborators to simultaneously contribute to an ontology. Over twenty people contributed to the development of this ontology by adding terms, genus differentia, references, images, relationships, and annotations. The database interface returns an Open Biomedical Ontology (OBO) formatted version of the ontology and includes mechanisms for extracting candidate data and for publishing a searchable ontology to the Web. The application tools are subject-agnostic and may be used by others initiating and developing ontologies. The present core HAO data constitute 2,111 concepts, 6,977 terms (labels for concepts), 3,152 relations, 4,361 sensus (links between terms, concepts, and references) and over 6,000 text and graphical annotations. The HAO is rooted with the Common Anatomy Reference Ontology (CARO), in order to facilitate interoperability with and future alignment to other anatomy ontologies, and is available through the OBO Foundry ontology repository and BioPortal. The HAO provides a foundation through which connections between genomic, evolutionary developmental biology, phylogenetic, taxonomic, and morphological research can be actualized. Inherent mechanisms for feedback and content delivery demonstrate the effectiveness of remote, collaborative ontology development and facilitate future refinement of the HAO.     

Functional analysis of all nonribosomal peptide synthetases in Cochliobolus heterostrophus reveals a factor, NPS6, involved in virulence and resistance to oxidative stress

Nonribosomal peptides, made by nonribosomal peptide synthetases, have diverse biological activities, including roles as fungal virulence effectors. Inspection of the genome of Cochliobolus heterostrophus, a fungal pathogen of maize and a member of a genus noted for secondary metabolite production, revealed eight multimodular nonribosomal peptide synthase (NPS) genes and three monomodular NPS-like genes, one of which encodes a nonribosomal peptide synthetase/polyketide synthase hybrid enzyme presumed to be involved in synthesis of a peptide/polyketide molecule. Deletion of each NPS gene and phenotypic analyses showed that the product of only one of these genes, NPS6, is required for normal virulence on maize. NPS6 is also required for resistance to hydrogen peroxide, suggesting it may protect the fungus from oxidative stress. This and all other nps mutants had normal growth, mating ability, and appressoria. Real-time PCR analysis showed that expression of all NPS genes is low (relative to that of actin), that all (except possibly NPS2) are expressed during vegetative growth, and that expression is induced by nitrogen starvation. Only NPS6 is unfailingly conserved among euascomycete fungi, including plant and human pathogens and saprobes, suggesting the possibility that NPS6 activity provides oxidative stress protection during both saprobic and parasitic growth.     

The first spectroscopic model for the S1 state multiline signal of the OEC

The parallel-mode electron paramagnetic resonance (EPR) spectrum of the S(1) state of the oxygen-evolving complex (OEC) shows a multiline signal centered around g=12, indicating an integer spin system. The series of [Mn(2)(2-OHsalpn)(2)] complexes were structurally characterized in four oxidation levels (Mn(II)(2), Mn(II)Mn(III), Mn(III)(2), and Mn(III)Mn(IV)). By using bulk electrolysis, the [Mn(III)Mn(IV)(2-OHsalpn)(2)(OH)] is oxidized to a species that contains Mn(IV) oxidation state as detected by X-ray absorption near edge spectroscopy (XANES) and that can be formulated as Mn(IV)(4) tetramer. The parallel-mode EPR spectrum of this multinuclear Mn(IV)(4) complex shows 18 well-resolved hyperfine lines center around g=11 with an average hyperfine splitting of 36 G. This EPR spectrum is very similar to that found in the S(1) state of the OEC. This is the first synthetic manganese model complex that shows an S(1)-like multiline spectrum in parallel-mode EPR.     

Internal and external mycoflora of the American dog tick,Dermacentor variabilis (Acari: Ixodidae), and its ecological implications

Scopulariopsis brevicaulis, the anamorph of Microascus brevicaulis (Microascaceae, Ascomycota), has been identified in the body contents of the tick Dermacentor variabilis. After topical application of the fungal inoculum, tick mortality was marked. This is the first account describing the internal mycoflora of D. variabilis with a novel technique used to recover potential biological control agents.