Gaining insights into relevance across cancers based on mutation features of TP53 gene

The tumor suppressor gene TP53, one of the most frequently mutated genes, is recognized as the guardian of genome and can provide a significant barrier to neoplastic transformation and tumor progression. Traditional theory believes that TP53 mutations are equal among cancer types. However, to date, no study has explored the TP53 mutation profile from a holistic and systematic standpoint to discovery its relevance and feature with cancers. Mutation signature, an unbiased approach to identify the mutational processes, can be a potent indicator for exploring mutation-driven tumor occurrence and progression. In this research, several features such as hotspots, mutability and mutation signature of somatic TP53 mutations derived from 18 types of cancer tissues from cBioPortal were analyzed and manifested the organizational preference among cancers. Mutation signatures found in almost all cancer types were Signature 6 related to mismatch repair deficiency, and Signature 1 that reflects the natural decomposition of 5-methylcytosine into thymine associated with aging. Meanwhile, several signatures of TP53 mutations displayed tissue-selective. Mutations enriched in bladder, skin, lung cancer were associated with signatures of APOBEC activity (Signature 2 and 13), alkylating agents (Signature 11), and tobacco smoke (Signature 4), respectively. Moreover, Signature 4 and 29 associated with tobacco smoking or chewing found in lung, sarcoma, esophageal, and head and neck cancer may be related to their smoking history. In addition, several digestive cancers, including colorectal, stomach, pancreatic and esophageal cancers, showed the high correlation in context and mutation signature profiles. Our study suggests that the tissue-selective activity of mutational processes would reflect the tissue-specific enrichment of TP53 mutations and provides a new perspective to understand the relevance of diverse diseases based on the spectrum of TP53 mutations.     

马尾松花粉中植物甾醇成分分析

采用正己烷超声浸提法提取破壁马尾松花粉中的植物甾醇成分,L-B比色法(Liebermann-Burchard)测定马尾松花粉中总甾醇含量,并用GC-MS(气相色谱-质谱联用法)首次对马尾松花粉中的植物甾醇进行详细定性分析。测得马尾松花粉中总甾醇含量为1.680 mg/g,并鉴定出8种植物甾醇成分,分别为:Δ5-菜油甾醇,豆甾醇,Δ7-菜油甾醇,β-谷甾醇,Δ5-燕麦甾醇,禾本甾醇,环阿屯醇和24-亚甲基环木菠萝烷醇。     

Transcriptome Profile of a Long-Juvenile Soybean Genotype Huaxia-3 Under Short and Long Photoperiod

Plant Molecular Biology Reporter - The j allele delays flowering and enhances yield of long juvenile (LJ) soybean under short day (SD) condition. However, the underlying mechanism of j in flowering...     

Effects of Bacillus Subtilis-Zinc on Rats with Congenital Zinc Deficiency

Biological Trace Element Research - This study investigated the effects of dietary supplementation of Bacillus subtilis-zinc on growth rates of the body and organs, nutrient utilization, microbial...     

Metagenomic insights into the alteration of soil N-cycling-related microbiome and functions under long-term conversion of cropland to Miscanthus

Miscanthus spp. show excellent application prospects due to its bioenergy potential and multiple ecological services. Annual N export with biomass harvest from Miscanthus, even without fertilizer supplement, do not reduce soil N levels. The question arises regarding how Miscanthus can maintain stable soil N levels. Metagenomic strategies were used to reveal soil N-cycling-related microbiome and their functional contributions to processes of soil N-cycling based on the comparison among the bare land, cropland, 10-year Miscanthus × giganteus, and 15-year Miscanthus sacchariflorus fields. The results showed that, after long-term cropland-to-Miscanthus conversion (LCMC), 16 of 21 bacterial phyla and all the archaeal phyla exhibited significant changes. Soil microbial denitrification and nitrification functions were significantly weakened, and N fixation (NF) was significantly enhanced. The biosynthesis of amino acids, especially alanine, aspartate, and glutamate metabolism, in soil N-cycling-related microbiome was dramatically promoted. The genus Anaeromyxobacter contributed largely to the NF process after LCMC. Variations in the soil available potassium, available N, organic C, and total N contents drove a functional shift of soil microbiome from cropland to Miscanthus pattern. We conclude that Miscanthus can recruit Anaeromyxobacter communities to enhance NF benefiting its biomass sustainability and soil N balance.     

大气CO2浓度升高对不同层次水稻土有机碳稳定性的影响

研究大气CO₂浓度升高对不同层次土壤有机碳(SOC)稳定性的影响对深入理解高浓度CO₂下SOC转化具有重要意义.以FACE(Free Air Carbon-dioxide Enrichment)平台长期定位试验水稻土为研究对象,通过SOC物理分级及矿化培养试验,研究大气CO₂浓度升高对稻田SOC含量、颗粒有机质(POM)含量、SOC矿化强度和酶活性变化的影响,探讨CO₂浓度升高对不同层次稻田SOC稳定性的影响.结果表明:大气CO₂浓度升高对表层SOC含量无显著影响,但使表层土壤POM-C显著增加了93.7%,同时使表层土壤蔗糖酶和多酚氧化酶活性分别提高了61.1%和83.7%,从而降低了表层SOC稳定性;大气CO₂浓度升高对深层SOC含量及其稳定性均无显著影响.研究结果将有助于评估土壤固定和储备碳的能力,为今后温室效应下农田管理提供科学依据.     

高糖通过诱导自噬障碍促进心肌细胞H9c2凋亡

目的探讨自噬对高糖（HG）诱导的心肌细胞H9c2凋亡的影响。 方法MTT法检测H9c2细胞活力;hoechst33258染色法检测凋亡细胞;Western Blot检测H9c2细胞促凋亡蛋白Bax和自噬相关蛋白（Beclin-1和P62）的表达。各组的OD值和蛋白条带灰度值均采用析因设计的方差分析,各组间差异用单因素ANOVA分析。 结果HG能诱导H9c2细胞活力降低：12、24、48 mmol/L的HG细胞活力分别为Control组（100%）的[（79.5±2.23）%]（t = 3.143,P = 0.043）、[（54.6±3.08）%]（t = 12.425,P = 0.000）和[（37.2±2.59）%]（t = 13.761,P = 0.000）;与Control组（100%）比较,甘露醇等渗对照组的细胞活力值为[（101.0±1.27）%]（t = 0.012,P = 0.094）。HG诱导H9c2细胞hoechst33258阳性细胞增加,且能诱导促凋亡蛋白Bax表达增加：与Control组比较,12、24、48 mmol/L的HG处理组凋亡蛋白Bax/β-actin灰度值分别为（1.29±0.25,t = 2.32,P = 0.045）、（1.42±0.23,t = 10.247,P = 0.000）和（1.81±0.29,t = 16.324,P = 0.000）。HG诱导自噬障碍：与Control组比较,自噬相关蛋白Beclin-1/β-actin灰度值分别为（0.82±0.16,t = 4.243,P = 0.032）、（0.78±0.19,t = 11.341,P = 0.000）和（0.62±0.11,t = 13.455,P = 0.000）,P62蛋白/β-actin蛋白灰度值分别为（1.29±0.25,t = 4.442,P = 0.014）、（1.42±0.23,t = 13.341,P = 0.000）和（1.81±0.29,t = 15.851,P = 0.000）。自噬诱导剂雷帕霉素可逆转HG诱导的hoechst33258阳性细胞增加,且逆转HG诱导的Bax表达升高：与control组比较,HG组、HG和雷帕霉素共处理组、雷帕霉素组的Bax/β-actin灰度值分别为（1.51±0.31,t = 14.342,P = 0.000）、（1.42±0.23,t = 9.621,P = 0.004）和（1.81±0.12,t = 0.172,P = 0.124）。 结论HG可促进心肌细胞H9c2凋亡,且能诱导自噬障碍,自噬诱导剂的运用逆转了HG对H9c2细胞的凋亡作用,表明自噬障碍是HG诱导H9c2细胞凋亡的重要机制。     

宁夏黄土高原马铃薯连作栽培对土壤可培养细菌遗传多样性的影响

采用平板培养、BOXAIR-PCR和16S rDNA RFLP技术对宁夏黄土高原马铃薯连作栽培土壤可培养细菌遗传多样性进行研究。结果表明,4个连作年限2个生育期8份土样共分离到91株细菌菌株, BOXAIR-PCR分析发现,91株细菌菌株的遗传相似系数为0.531～0.939,相同连作年限不同生育期根际土细菌菌群分布不同,不同连作年限同一生育期根际土细菌菌群的分布也不同,随着连作年限增加,可培养细菌遗传多样性呈现下降趋势;结合16S rDNA 的序列分析,从91株菌株中筛选出的41个代表菌株可分为23个物种,分属于细菌域的12个属,其中,芽孢杆菌属（Bacillus）占同一连作年限菌株数的53.6%。连作导致土壤细菌菌群结构发生变化,出现各自特有的菌属。系统发育分析表明,23个细菌物种分布于6个系统发育群。