Cloning and Drought Resistance Analysis of Soybean <i>GmHsps_p23-like</i> Gene

Soybean (Glycine max (L.) Merr.) is an important cultivated crop, which requires much water during its growth, and drought seriously affects soybean yields. Studies have shown that the expression of small heat shock proteins can enhance drought resistance, cold resistance and salt resistance of plants. In this experiment, soybean GmHsps_p23-like gene was successfully cloned by RT-PCR, the protein encoded by the GmHsps_p23-like gene was subjected to bioinformatics analysis, and the pCAMBIA3301-GmHsps_p23-like overexpression vector and pCBSG015-GmHsps_p23-like gene editing vector were constructed. Agrobacterium-mediated method was used to transform soybeans to obtain positive plants. RT-PCR detection, rehydration experiment and drought resistance physiological and biochemical index detection were performed on the T₂ generation positive transgenic soybean plants identified by PCR and Southern hybridization. The results showed that the overexpression vector plant GmHsps_p23-like gene expression increased. After rehydration, the transgenic overexpression plants returned to normal growth, and the damage to the plants was low. After drought stress, the SOD and POD activities and the PRO content of the transgenic overexpression plants increased, while the MDA content decreased. The reverse was true for soybean plants with genetically modified editing vectors. The drought resistance of the overexpressed soybeans under drought stress was higher than that of the control group, and had a stronger drought resistance. It showed that the expression of soybean GmHsps_p23-like gene can improve the drought resistance of soybean. The cloning and functional verification of soybean GmHsps_p23-like gene had not been reported yet. This is the first time that PCR technology has been used to amplify the soybean GmHsps_p23-like gene and construct an expression vector for this gene. This research has laid the foundation for transgenic technology to improve plant drought resistance and cultivate new drought-resistant transgenic soybean varieties.     

Endophytic microbes <Emphasis Type="Italic">Bacillus</Emphasis> sp. LZR216-regulated root development is dependent on polar auxin transport in <Emphasis Type="Italic">Arabidopsis</Emphasis> seedlings

Key message

Endophytic microbes Bacillus sp. LZR216 isolated from Arabidopsis root promoted Arabidopsis seedlings growth. It may be achieved by promoting the lateral root growth and inhibiting the primary root elongation.

Abstract

Plant roots are colonized by an immense number of microbes, including epiphytic and endophytic microbes. It was found that they have the ability to promote plant growth and protect roots from biotic and abiotic stresses. But little is known about the mechanism of the endophytic microbes-regulated root development. We isolated and identified a Bacillus sp., named as LZR216, of endophytic bacteria from Arabidopsis root. By employing a sterile experimental system, we found that LZR216 promoted the Arabidopsis seedlings growth, which may be achieved by promoting the lateral root growth and inhibiting the primary root elongation. By testing the cell type-specific developmental markers, we demonstrated that Bacillus sp. LZR216 increases the DR5::GUS and DR5::GFP expression but decreases the CYCB1;1::GUS expression in Arabidopsis root tips. Further studies indicated that LZR216 is able to inhibit the meristematic length and decrease the cell division capability but has little effect on the quiescent center function of the root meristem. Subsequently, it was also shown that LZR216 has no significant effects on the primary root length of the pin2 and aux1-7 mutants. Furthermore, LZR216 down-regulates the levels of PIN1-GFP, PIN2-GFP, PIN3-GFP, and AUX1-YFP. In addition, the wild-type Arabidopsis seedlings in the present of 1 or 5 µM NPA (an auxin transport inhibitor) were insensitive to LZR216-inhibited primary root elongation. Collectively, LZR216 regulates the development of root system architecture depending on polar auxin transport. This study shows a new insight on the ability of beneficial endophytic bacteria in regulating postembryonic root development.

     

喀斯特峰丛洼地不同类型森林养分循环特征

以中国西南喀斯特峰丛洼地为研究区域用标准木法和收获法对人工林、次生林、原生林3个不同类型森林的6个代表性群落的生物量、营养元素生物循环量及循环特征进行了研究。结果表明:(1)不同类型森林群落乔木各器官的养分含量大小顺序为:叶枝根干,林下植被层和凋落物层的养分含量比较高,其含量普遍高于乔木层各组分,仅次于乔木叶片;各组分中营养元素以K、Ca最高,P、Mg最低;(2)3种类型森林间乔木层的养分积累量总规律表现为原生林(4540.30 kg/hm~2)次生林(2107.09 kg/hm~2)人工林(719.51 kg/hm~2),分别占林分养分积累量的88.30%、79.57%和62.60%;(3)3种类型森林生态系统养分总贮量相差不大,均主要集中在土壤层在各层分配格局有所差异;营养元素的年吸收量和年归还量均为次生林原生林人工林,年吸收量分别为:418.80、271.17和148.79 kg hm~(-2)a~(-1);年归还量分别为:182.98、111.43和43.37 kg hm_(-2)a~(-1);(4)不同类型森林养分利用系数总规律为人工林(0.35)次生林(0.20)原生林(0.10);循环系数则相反,为原生林(0.48)次生林(0.46)人工林(0.30);而周转时间为原生林(37.32)人工林(18.63)次生林(13.93)。喀斯特峰丛洼地土层薄,养分贮存能力差,森林养分循环能力相对较弱,沿着强、中、弱干扰递减梯度,3种类型森林养分利用效率和循环能力呈增长趋势。     

Comparative Genomic Analysis of 45 Type Strains of the Genus Bifidobacterium: A Snapshot of Its Genetic Diversity and Evolution

Bifidobacteria are well known for their human health-promoting effects and are therefore widely applied in the food industry. Members of the Bifidobacterium genus were first identified from the human gastrointestinal tract and were then found to be widely distributed across various ecological niches. Although the genetic diversity of Bifidobacterium has been determined based on several marker genes or a few genomes, the global diversity and evolution scenario for the entire genus remain unresolved. The present study comparatively analyzed the genomes of 45 type strains. We built a robust genealogy for Bifidobacterium based on 402 core genes and defined its root according to the phylogeny of the tree of bacteria. Our results support that all human isolates are of younger lineages, and although species isolated from bees dominate the more ancient lineages, the bee was not necessarily the original host for bifidobacteria. Moreover, the species isolated from different hosts are enriched with specific gene sets, suggesting host-specific adaptation. Notably, bee-specific genes are strongly associated with respiratory metabolism and are potential in helping those bacteria adapt to the oxygen-rich gut environment in bees. This study provides a snapshot of the genetic diversity and evolution of Bifidobacterium, paving the way for future studies on the taxonomy and functional genomics of the genus.     

Comparison of Treatment Safety and Patient Survival in Elderly versus Nonelderly Patients with Advanced Hepatocellular Carcinoma Receiving Sorafenib Combined with Transarterial Chemoembolization: A Propensity Score Matching Study

AimsThis retrospective study was carried out to compare the outcomes between elderly (≥70 years of age) and nonelderly patients (<70 years of age) with advanced hepatocellular carcinoma (HCC) who received sorafenib combined with transarterial chemoembolization (TACE).Methods88 patients with a confirmed diagnosis of advanced HCC were enrolled in this study. Of these, 24 elderly patients were matched with 48 nonelderly patients at a 1:2 ratio using propensity score matching to minimize selection bias. The related adverse events and survival benefits were compared between the two groups.ResultsSorafenib combined with TACE was equally well tolerated in both age groups, and grade 3 or 4 adverse events were similarly observed in 54.2% of elderly and 50.0% of nonelderly patients (P = 0.739). There were no significant differences in survival time between the elderly and nonelderly patients (P = 0.876). Significant prognostic factors for overall survival as identified by multivariate analysis were the Child–Pugh score and portal vein invasion.ConclusionsSorafenib combined with TACE may be well tolerated and effective in elderly patients with advanced HCC. Age alone is not a parameter for the treatment of advanced HCC patients.     

SGTA基因及其蛋白的生物信息学分析

[目的]对SGTA基因及其蛋白的结构和特征进行生物信息学分析,为研究SGTA与肿瘤形成和发展的相关性提供理论基础。[方法]运用生物信息学数据库和软件对SGTA基因的结构、单核苷酸多态性位点(SNP)、SGTA基因与其他基因的相互作用网络、SGTA蛋白的理化性质、二级结构、蛋白结构域、蛋白翻译后修饰、蛋白质之间相互作用网络进行分析。[结果]人SGTA基因有5种可变剪接产物,编码区存在78个SNP位点,其中错义突变31个,无义突变1个。人SGTA蛋白由313个氨基酸组成,是稳定性不高的亲水蛋白,α-螺旋是其主要二级结构元件,属于TRP超家族,预测有3个磷酸化激酶修饰位点和数个潜在泛素化修饰位点。与SGTA存在相互作用的基因和蛋白多数与维持体内蛋白质稳定的分子伴侣功能相关。[结论]SGTA基因及其蛋白的生物信息学分析为进一步实验研究其在肿瘤形成和发展中的地位及调控机制奠定了基础。     

刺葡萄抗白腐病转录因子VdWRKY53基因克隆及表达

利用同源克隆的方法,分别获得‘刺葡萄0943’的转录因子VdWRKY53基因的编码区和启动子区域,分析其序列特征,通过实时荧光定量检测其对白腐病菌侵染和水杨酸诱导的反应,并以感病品种欧亚种‘黑比诺’为对照,分析不同种质中转录因子VdWRKY53基因序列及表达差异。结果表明:‘刺葡萄0943’的VdWRKY53基因,在其编码区和启动子区域都有抗病基因的序列和位点特征,在DNA和氨基酸水平上与‘黑比诺’VvWRKY53有5处差异,这5处氨基酸差异可能造成了其功能的差异;‘刺葡萄0943’和‘黑比诺’中的WRKY53基因启动子受葡萄白腐病菌和水杨酸诱导后表达量增加,且VdWRKY53基因表达量和趋势不同于‘黑比诺’VvWRKY53。生物信息学分析和实时荧光定量表明,在‘刺葡萄0943’抗病途径中VdWRKY53转录因子具有重要的生物学作用。