砷超富集植物蜈蚣草原生质体的分离及其抗砷性分析

蜈蚣草（Pteris vittata）是一种砷超富集植物,能够通过根从土壤中吸收砷,并将其输送至羽叶中富集.为了探索蜈蚣草单个细胞在砷积累和砷抗性中的特性,本文首次通过酶解方法获得了这一砷超富集蕨类植物的原生质体,并研究了原生质体在不同浓度砷胁迫下的生活力.结果显示,蜈蚣草原生质体的抗砷性远高于烟草原生质体的抗砷性,与其整体植株的抗性一致.这为探索砷抗性和超富集机理提供了一个新的研究体系.     

Seed-to-seed potential allelopathic effects between <Emphasis Type="Italic">Ligularia virgaurea</Emphasis> and native grass species of Tibetan alpine grasslands

Allelopathy is an important process in plant communities, but the role of seed allelopathy in natural ecosystems remains poorly understood. In the present study, we examined the potential allelopathic effects of Ligularia virgaurea (a dominant species in degraded Tibetan grasslands) seeds on the germination of four native grass species (Festuca sinensis, Agrostis gigantean, Bromus inermis, and Elymus nutans). The results showed that L. virgaurea seeds can have potential allelopathic effects on seed germination, mean time to germination and root growth rates of native grass species. We further demonstrate that these effects are driven by a water-soluble seed leachate. Species with smaller seeds were generally more sensitive than larger seeded species. The results suggest that seed-to-seed allelopathic potential may be an important mechanism driving the dominance of L. virgaurea in degraded alpine grasslands on the Tibetan Plateau. Further studies are required to demonstrate effects of seed-to-seed potential allelopathy in a field setting.     

塔克拉玛干沙漠腹地胡杨林土壤细菌多样性分析

【目的】对塔克拉玛干沙漠腹地胡杨林土壤细菌多样性进行初步探索,为下一步从中筛选可用于生物饲料或生物肥料的微生物奠定基础。【方法】采用可培养方法,进行细菌的分离纯化。对各菌株进行革兰氏染色及淀粉酶、酯酶、纤维素酶和NaCl耐受浓度的测定,并提取各菌株基因组DNA,进行16SrRNA基因扩增、测序及系统进化树的绘制,分析其多样性。【结果】共分离得到27株菌,其中放线菌门(Actinobacteria)16株,变形菌门(Proteobacteria)4株,厚壁菌门(Firmicutes)6株,拟杆菌门(Bacteroidetes)1株。革兰氏染色结果表明,5株菌为革兰氏阴性,其余为革兰氏阳性;酶活测定结果表明,15株菌具有淀粉酶活性,9株菌具有酯酶活性,9株菌具有纤维素酶活性;NaCl耐受浓度测定结果显示,NaCl浓度为2%时所有菌株均能生长,5%时能生长的有22株,15%时能生长的有1株。【结论】塔克拉玛干沙漠腹地胡杨林土壤中存在较丰富的细菌类群,且具有一定的酶学活性和NaCl耐受性,具有进一步研究开发的价值。     

Highly efficient expression and purification system of small-size protein domains in Escherichia coli for biochemical characterization

It is often essential to focus the study on the small-size domains of large proteins in eukaryotic cells in the post-genomic era, but the low expression level, insolubility, and instability of the domains have been continuing to hinder the massive purification of domain peptides for structural and biological investigation. In this work, a highly efficient expression and purification system based on a small-size fusion partner GB1 and histidine tag was utilized to solve these problems. Two vectors, namely pGBTNH and pGBH, were constructed to improve expression and facilitate purification. The linker and thrombin cleavage site have been optimized for minimal degradation during purification process. This system has been tested for eight domain peptides varying in size, linker, hydrophobicity, and predicted secondary structure. The results indicate that this system is achievable to produce these domain peptides with high solubility and stability for further biochemical characterization. Moreover, the fusion protein without the linker and thrombin cleavage site is also suitable for spectroscopic studies especially for NMR structural elucidation, if the target peptide is prone to precipitation or easily degraded during purification. This system will be beneficial to the research field of structure and function of small domain and peptide fragment.     

高通量测序分析实验性脑脊髓炎肠道微生物变化及与IL-17、IFN-γ相关性

【目的】通过建立实验性脑脊髓膜炎(EAE)小鼠模型,观察小鼠肠道菌群在不同发病时间点的变化和炎症因子IL-17、IFN-γ的表达情况,探讨肠道菌群的变化在EAE发病中的免疫调节作用。【方法】将48只C57BL/6小鼠按照随机数字表法分为正常对照组、EAE模型组各24只。EAE组采用MOG35-55与完全弗氏佐剂的混合物制备模型,进行神经功能评分,记录体重变化。分别取免疫后7、14、21、30 d的小鼠粪便,对样本DNA的16S rDNA V3/V4区基因测序。ELASE法检测IL-17、IFN-γ的表达。【结果】EAE组小鼠血液中IL-17、IFN-γ的表达从第7天开始逐渐升高,21 d时达到高峰。14 d时,EAE组与正常对照组相比,物种丰度有显著性差异(P0.05)的菌种有:Alistipes、布牢特氏菌属、毛螺菌科_NK4A136_group等。30dEAE组与正常对照组相比,物种丰度有显著性差异(P0.05)的菌种有:Allobaculum、真细菌属、螺杆菌等。通过LefSe分析,在7、14、21 d中分别主要作用的微生物菌种逐渐减少,在21d时最少。Odoribacter在21d时起了主要作用。【结论】与正常对照组相比,14、21、30dEAE小鼠肠道菌种的丰度均发生了变化,产生了肠道菌群的紊乱;其中普雷沃氏菌属_NK3B31_group的丰度均较正常对照组降低,与IFN-γ呈负相关(r=–0.537,P0.01)。普雷沃氏菌属_NK3B31_group可能是导致MS脱髓鞘发生的关键菌属。EAE组各个时间点相比起主要作用的肠道菌群种类减少,多样性降低。其中,Odoribacter是在21 d高峰期起主要作用的菌种,但其作用机制需要深入研究。EAE组中炎症因子IL-17、IFN-γ表达的升高,促进了MOG35-55诱发的炎症反应。     

兔肺静脉肌袖心肌细胞动作电位的特性和一些离子流机制

研究兔肺静脉肌袖心肌细胞（cardiomyocytes from rabbit pulmonary vein sleeves, PVC）动作电位的特性和一些离子流机制——内向整流钾电流（IKl）、瞬时外向钾电流（ITo）和非选择性阳离子流（I NSCC）,并与左心房心肌细胞（left atrial cardiomyocytes,LAC）进行比较。采用全细胞膜片钳技术,记录动作电位和上述各离子流。发现PVC动作电位时程（action potential duration,APD）较LAC的明显延长,并可以诱发出第二平台反应。PVC上存在I NSCC. PVC的IKl、I To和I NSCC电流密度均较LAC的明显减小。PVC和LAC存在复极离子流的差异,这种差异构成了两者动作电位差异的基础,进而可能成为肺静脉肌袖致心律失常特性的重要离子流机制。     

Purification and characterization of a fibrinolytic enzyme of Bacillus subtilis DC33, isolated from Chinese traditional Douchi

Bacillus subtilis DC33 producing a novel fibrinolytic enzyme was isolated from Ba-bao Douchi, a traditional soybean-fermented food in China. The strong fibrin-specific enzyme subtilisin FS33 was purified to electrophoretic homogeneity using the combination of various chromatographic steps. The optimum temperature, pH value, and pI of subtilisin FS33 were 55°C, 8.0, and 8.7, respectively. The molecular weight was 30 kDa measured by SDS–PAGE under both reducing and non-reducing conditions. The enzyme showed a level of fibrinolytic activity that was about six times higher than that of subtilisin Carlsberg. The first 15 amino acid residues of N-terminal sequence of the enzyme were A-Q-S-V-P-Y-G-I-P-Q-I-K-A-P-A, which are different from that of other known fibrinolytic enzymes. The amidolytic activities of subtilisin FS33 were inhibited completely by 5 mM phenylmethanesulfonyl fluoride (PMSF) and 1 mM soybean trypsin inhibitor (SBTI), but 1,4-dithiothreitol (DTT), β-mercaptoethanol, and p-hydroxymercuribenzoate (PHMB) did not affect the enzyme activity; serine and tryptophan are thus essential in the active site of the enzyme. The highest affinity of subtilisin FS33 was towards N-Succ-Ala-Ala-Pro-Phe-pNA. Therefore, the enzyme was considered to be a subtilisin-like serine protease. The fibrinolytic enzyme had a high degrading activity for the Bβ-chains and Aα-chain of fibrin(ogen), and also acted on thrombotic and fibrinolytic factors of blood, such as plasminogen, urokinase, thrombin, and kallikrein. So subtilisin FS33 was able to degrade fibrin clots in two ways, i.e., (a) by forming active plasmin from plasminogen and (b) by direct fibrinolysis.     

Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis

Oryza officinalis (CC, 2n=24) and Oryza rhizomatis (CC, 2n=24) belong to the Oryza genus, which contains more than 20 identified wild rice species. Although much has been known about the molecular composition and organization of centromeres in Oryza sativa, relatively little is known of its wild relatives. In the present study, we isolated and characterized a 126-bp centromeric satellite (CentO-C) from three bacterial artificial chromosomes of O. officinalis. In addition to CentO-C, low abundance of CentO satellites is also present in O. officinalis. In order to determine the chromosomal locations and distributions of CentO-C (126-bp), CentO (155 bp) and TrsC (366 bp) satellite within O. officinalis, fluorescence in situ hybridization examination was done on pachytene or metaphase I chromosomes. We found that only ten centromeres (excluding centromere 7 and 2) contain CentO-C arrays in O. officinalis, while centromere 7 comprises CentO satellites, and centromere 2 is devoid of any detectable satellites. For TrsC satellites, it was detected at multiple subtelomeric regions in O. officinalis, however, in O. rhizomatis, TrsC sequences were detected both in the four centromeric regions (CEN 3, 4, 10, 11) and the multiple subtelomeric regions. Therefore, these data reveal the evolutionary diversification pattern of centromere DNA within/or between close related species, and could provide an insight into the dynamic evolutionary processes of rice centromere.     

Protocol for the production of viable bimaternal mouse embryos

A reliable nuclear transfer method was first reported in 1983; it provided definite evidence that parthenogenetic embryos are lethal at early postimplantation in mammals. Subsequently, nuclear transfer has been extensively used as an important and versatile tool for investigating embryo and somatic-cell cloning and nucleo-cytoplasmic interactions. Further development of this technique has enabled the generation of bimaternal embryos containing two haploid sets of maternal genomes from female germ cells of different origins. By using a 2-d nuclear transfer system for oocyte reconstruction, viable mice can be produced solely from maternal genomes, without the participation of the paternal genome. This oocyte reconstruction system, as described in this protocol, could provide valuable guidelines for exploring the potential endowments of gametes and for conferring novel properties to them.     

亚热带不同林分土壤矿质氮库及氮矿化速率的季节动态

以亚热带地区天然林、格氏栲人工林和杉木人工林为对象,采取PVC管原位培养连续取样法,对不同林分土壤净氨化速率、净硝化速率及净氮矿化速率进行为期一年(2014年9月—2015年8月)的研究,分析林分类型和季节动态对土壤矿质氮库和净氮矿化速率的影响.结果表明: 硝态氮是该地区土壤矿质氮库的主要存在形式,天然林和杉木人工林土壤硝态氮含量分别占总土壤矿质氮库的55.1%～87.5%和56.1%～79.1%,林分间土壤铵态氮含量差异不显著,硝态氮含量差异显著,其中格氏栲人工林土壤硝态氮含量显著低于天然林和杉木人工林.土壤硝态氮库和矿质氮库在不同月份间差异显著,在植物非生长季节(10月至次年2月)较大,在植物生长季节(3—9月)较小.各林分全年土壤净硝化速率均较低,净氨化速率是净氮矿化速率的主要存在形式,林分类型对土壤净氨化速率有显著影响,其中杉木人工林显著低于天然林和格氏栲人工林.月份对土壤净氨化速率有显著影响,各林分土壤净氨化速率变化规律不一致,但均在11月和2月达到一年中的最低值.重复测量方差分析显示,林分类型和季节动态对土壤矿质氮库及氮矿化速率均有显著影响.温度和水分是影响土壤矿质库及氮矿化速率的重要因素,凋落物对土壤氮矿化速率的影响主要是通过质量控制而非数量控制.