Radiometrically determined dates and sedimentation rates for recent sediments in nine North African wetland lakes (the CASSARINA Project)

Sediment cores were collected from nine wetland lakes in Morocco, Tunisia and Egypt for the CASSARINA project investigating environmental change in Northern African wetlands. The cores were dated radiometrically by using natural (²¹⁰Pb) and artificial (¹³⁷Cs and ²⁴¹Am) radionuclides. At sites in Morocco and Tunisia with mean annual rainfall totals ranging from 500–1000 mm yr^–1, fallout records were generally satisfactory and it was possible to develop independent sediment chronologies based on the radiometric data alone. At the Egyptian sites, rainfall was less than 200 mm yr^–1 and fallout records were much less distinct. At these sites the radiometric data could only be used to give an indication of mean sedimentation rates during the past 30–40 years. By using a combination of fallout radionuclide, pollen, and macrofossil stratigraphic records it was however possible to determine a credible sediment chronology spanning the major part of the 20th century. Applying this chronology to records of spheroidal carbonaceous particles (SCP) from the same sediment cores, the onset of significant levels of atmospheric pollution in the Nile Delta is dated in all three cores to the mid 1950s. Results from a number of lakes (Sidi Bou Rhaba, Ichkeul and Korba) revealed high and accelerating siltation rates, threatening their continued existence beyond the next few decades. In contrast, sedimentation rates at all three Nile Delta sites appear to have declined in recent decades, most probably due to the impact of the Nile barrages.     

Terrestrial pollen record of recent land-use changes around nine North African lakes in the CASSARINA Project

Pollen analyses and related plant macrofossil records are presented from short cores from nine North African lakes in the EU-funded CASSARINA project. Terrestrial pollen reflects human impact on the vegetation and landscape over the last 150–100 years. Pollen changes, aided by radiometric dating, could be correlated with historical developments. The chronology of the landscape changes date other biostratigraphical records reflecting changes in the aquatic ecosystems.Three lakes in Morocco show gradually intensifying land-use over the last century. Accelerated technological development and landscape modification over the last 20 years culminated in one of the lakes being drained and cultivated during the project period. In Tunisia, a nationally unique acid-water lake is threatened by water withdrawal for increased catchment cultivation. The landscape around two other lakes is being increasingly cultivated and urbanised, and water withdrawal to support this has resulted in deleterious effects on the aquatic ecosystems, particularly at the internationally famous Garaet El Ichkeul where reed-marshes and macrophyte beds have been lost. The three lakes in the Egyptian Nile Delta are in the same hydrological system and show parallel changes in the balance between saltmarsh and reed-marsh. Control of Nile floods and year-round irrigation led to marked increases in cultivation in the delta region since ca. 1920. The Aswan High Dam (1964) had little detectable further effect. Documented planting of dates, palms, and olives and of introduced Casuarina and Eucalyptus trees provided a chronology to supplement the unsatisfactory radiometric dating of the sediments in this low-rainfall area.     

Melatonin and Environmental Lighting Regulate ALA‐S Gene Expression and So Porphyrin Biosynthesis in the Rat Harderian Gland

The main porphyrin in rodent Harderian glands (HGs) is the heme precursor protoporphyrin IX (PPIX). Rhythmic variations in PPIX levels have yet to be studied in rodent HGs. Moreover, the mode of regulation of heme biosynthesis in this organ is poorly documented in the rat. The aim of this study was to determine day‐night PPIX levels as well as day‐night activity and mode of expression of the porphyrinogenic enzymes δ‐aminolevulinate synthase (ALA‐S) and ferrochelatase (Fech) in the rat HG. The mRNA expression of ABCG2/Bcrp1 was also investigated. Male Wistar rats acclimatized to 12 h light (L): 12 h dark (D) cycles were sacrificed in the middle of both the L and D spans, and HG and liver tissues were collected. We report here that the HG contains an extremely high level of PPIX, 630‐ to 670‐fold higher than in the liver, without a day‐night difference, which is the consequence of both low Fech gene expression (5‐ to 7‐fold lower than in the liver) and ALA‐S over‐expression (4‐ to 7‐fold higher in the HG than liver). Fech and PPIX transporter ABCG2/Bcrp1 do not exhibit day‐night variation, whereas HG ALA‐S levels are significantly higher during the scotophase. Interestingly, when melatonin (10 mg/kg) is administered in the middle of the light phase, it increases ALA‐S mRNA levels in the HG to the ones observed during the middle of the D span. Continuous light exposure abolishes the day‐night ALA‐S variation in the HG that is observed under standard 12 L∶12 D conditions. Our results suggest that melatonin and environmental lighting regulate ALA‐S gene expression in the rat HG.     

Phosphoinositide-containing polymerized liposomes: stable membrane-mimetic vesicles for protein-lipid binding analysis

Stable phosphoinositide (PIP(n))-containing liposomes were prepared using polydiacetylene photochemistry. Tethered pentacosadiynyl inositol polyphosphate (InsP(n)) analogues of Ins(1,3,4)P(3), Ins(1,4,5)P(3), and Ins(1,3,4,5)P(4) were synthesized, incorporated into vesicles made up of diyne-phosphatidylcholine and -phosphatidylethanolamine, and polymerized by UV irradiation. The polymerized liposome nanoparticles showed markedly increased stability over conventional PIP(n)-containing vesicles as a result of the covalent conjugated ene-yne network in the acyl chains. The polymerized liposomes were specifically recognized by PIP(n) binding PH domains in liposome overlay assays and amplified luminescent proximity homogeneous assays. Moreover, the biotin moiety allowed attachment of the nanoparticles to a streptavidin-coated sensor chips in surface plasmon resonance (SPR) sensor. The PIP(n) headgroups displayed on SPR sensors showed higher affinities for PH domains and PIP(n) monoclonal antibodies than did monomeric PIP(n)-analogues with biotinylated acyl chains.     

Tributyl phosphate degradation by Serratia odorifera

Several strains from tributyl phosphate (TBP)-polluted soils were isolated and screened for their ability to degraded this widely used organophosphorus compound. The most active strain, identified as Serratia odorifera, degrades up to 600 microM TBP (initially present in the medium at 2 mM) during its growth phase, within 8 h from inoculation. However, this bacterium could not utilize TBP as the sole carbon and/or phosphorus source but nevertheless is a good candidate for bioremediation of TBP-polluted industrial sites.     

Determining the Binding Affinity of Therapeutic Monoclonal Antibodies towards Their Native Unpurified Antigens in Human Serum

Monoclonal antibodies (mAbs) are a growing segment of therapeutics, yet their in vitro characterization remains challenging. While it is essential that a therapeutic mAb recognizes the native, physiologically occurring epitope, the generation and selection of mAbs often rely on the use of purified recombinant versions of the antigen that may display non-native epitopes. Here, we present a method to measure both, the binding affinity of a therapeutic mAb towards its native unpurified antigen in human serum, and the antigen’s endogenous concentration, by combining the kinetic exclusion assay and Biacore’s calibration free concentration analysis. To illustrate the broad utility of our method, we studied a panel of mAbs raised against three disparate soluble antigens that are abundant in the serum of healthy donors: proprotein convertase subtilisin/kexin type 9 (PCSK9), progranulin (PGRN), and fatty acid binding protein (FABP4). We also determined the affinity of each mAb towards its purified recombinant antigen and assessed whether the interactions were pH-dependent. Of the six mAbs studied, three did not appear to discriminate between the serum and recombinant forms of the antigen; one mAb bound serum antigen with a higher affinity than recombinant antigen; and two mAbs displayed a different affinity for serum antigen that could be explained by a pH-dependent interaction. Our results highlight the importance of taking pH into account when measuring the affinities of mAbs towards their serum antigens, since the pH of serum samples becomes increasingly alkaline upon aerobic handling.     

Cytisus villosus from Northeastern Algeria is nodulated by genetically diverse Bradyrhizobium strains

Fifty-one rhizobial strains isolated from root nodules of Cytisus villosus growing in Northeastern Algeria were characterized by genomic and phenotypic analyses. Isolates were grouped into sixteen different patterns by PCR-RAPD. The phylogenetic status of one representative isolate from each pattern was examined by multilocus sequence analyses of four housekeeping genes (16S rRNA, glnII, recA, and atpD) and one symbiotic gene (nodC). Analysis of 16S rRNA gene sequences showed that all the isolates belonged to the genus Bradyrhizobium. Phylogenetic analyses based on individual or concatenated genes glnII, recA, and atpD indicated that strains cluster in three distinct groups. Ten out of the sixteen strains grouped together with Bradyrhizobium japonicum, while a second group of four clustered with Bradyrhizobium canariense. The third group, represented by isolates CTS8 and CTS57, differed significantly from all other bradyrhizobia known to nodulate members of the Genisteae tribe. In contrast with core genes, sequences of the nodC symbiotic gene from all the examined strains form a homogeneous group within the genistearum symbiovar of Bradyrhizobium. All strains tested nodulated Lupinus angustifolius, Lupinus luteus, and Spartium junceum but not Glycine max. From these results, it is concluded that C. villosus CTS8 and CTS57 strains represent a new lineage within the Bradyrhizobium genus.     

Both mating types of the wheat pathogen Mycosphaerella graminicola are present in Morocco

Septoria tritici blotch caused by the heterothallic ascomycete Mycosphaerella graminicola is one of the most currently damaging diseases on wheat crops worldwide. So far, no information was reported about the status of sexual reproduction of this pathogen under Moroccan conditions. We investigated here for the first time the occurrence of the two mating types (MAT1-1 and MAT1-2) of M. graminicola in Morocco by sampling 141 single-conidial isolates from 4 important wheat producing regions (Gharb, Sa?s, Chaouia and Tadla). The mating type of each isolate was determined by amplification with multiplex PCR of a partial sequence from the corresponding idiomorph. Overall, 43% out of the assessed isolates were MAT1-1 and 57 % were MAT1-2. Both mating types were identified within the 3 sampled regions Gharb, Sa?s and Chaouia, but not in Tadla, where only MAT1-2 isolates were found. The presence of the two mating types highlighted here offers a suitable genetic condition for M. graminicola to occur sexual reproduction in Morocco. The potential of sexual recombination will be examined by the study of mating type frequencies using a large sample size as well as by searching and quantification of pseudothecia in the field.     

Hydrological characteristics of three North African coastal lagoons: insights from the MELMARINA project

Hydrological and hydrodynamic characteristics are important controls in all wetlands including coastal lagoons. Enhanced understanding of lagoon functioning can be obtained through the acquisition and interpretation of hydrological, meteorological and related data. The MELMARINA Project investigated links between hydrological and ecological conditions within North African coastal lagoons. It employed three primary sites: Merja Zerga in Morocco, Ghar El Melh in Tunisia and Lake Manzala in Egypt. Hydrological, meteorological and related data were acquired for these lagoons. Data included precipitation, evaporation, wind speed and direction, freshwater discharges into the lagoons, tides beyond the lagoons in the open sea, lagoon bathymetry and time series of lagoon water levels/depths. Data were acquired from secondary sources (including online archives) and targeted field survey and monitoring programmes. Interpretation of these data provides insights into the hydrological functioning of the lagoons and contributed to the modelling requirements of MELMARINA. The functioning of Merja Zerga is dominated by the exchange of water between the Atlantic and the lagoon. Large, tidally induced oscillations in water level are responsible for the inundation of extensive inter-tidal mudflats whilst the rapid replacement of water by exchanges with the sea diminishes the influence of freshwater inflows and winter rainfall. The smaller Mediterranean tides reduce the magnitude of lagoon–sea exchanges and result in much smaller water level oscillations within Ghar El Melh. As a result, this lagoon lacks the inter-tidal environments found within the Moroccan site and hydrodynamic conditions are more likely influenced by wind set up. Although freshwater inflows to Ghar El Melh are smaller than those in Merja Zerga, their effects, coupled with heavy winter rainfall, can persist due to longer residence times of water within the lagoon. Freshwater inflows are central to the functioning of Lake Manzala. Large discharges of relatively freshwater are provided by major drains which cross the Nile Delta. These influence lake water levels and are responsible for the freshwater conditions within large parts of the lake. The small tidal range of the eastern Mediterranean, coupled with constricted connections with the sea, reduces the influence of lake–sea exchanges and tidally induced water level oscillations within Lake Manzala. Guest editors: J. R. Thompson & R. J. Flower Hydro-ecological Monitoring and Modelling of North African Coastal Lagoons