Mutagenicity testing with Salmonella typhimurium strains. II. The effect of unusual phenotypes on the mutagenic response.

The enhanced sensitivity of some Salmonella typhimurium strains to the mutagenic action of a number of chemicals appears to be due to the defect in the uvrB gene product and not to an inability to produce H-2-S or to the absence of formic acid hydrogenlyase which also characterizes these strains.     

Effect of leaf water deficit on stomatal and nonstomatal regulation of net carbon dioxide assimilation

The effect of leaf water deficit on net CO₂ assimilation was studied under two conditions: in one, the stomata were allowed to contribute to the regulation of CO₂ assimilation; in the other, air was forced through the leaf at a constant rate to overcome the effects of change in stomatal resistance accompanying changes in leaf water deficit. When the stomata were allowed to regulate the gaseous diffusive resistance of the leaf, CO₂ assimilation decreased with increasing leaf water deficit. However, when air was forced through the leaf, the rate of assimilation was not inhibited by increasing leaf water deficit. The results indicate that the inhibition of net CO₂ assimilation with increasing leaf water deficit is a consequence of an increase in the diffusive resistance to gas exchange and not of a change in apparent mesophyll resistance.     

Ox liver glutamate dehydrogenase. The role of lysine-126 reappraised in the light of studies of inhibition and inactivation by pyridoxal 5''-phosphate.

The time-course of inactivation of bovine liver glutamate dehydrogenase by pyridoxal 5'-phosphate was studied in the presence of varied amounts of 2-oxoglutarate or NADH. Pseudo-first-order analysis reveals that the protection by both these compounds is competitive with respect to the chemical modifier. The competition is only partial, however: saturation with either NADH or 2-oxoglutarate decreases the rate constant for inactivation to a finite minimum and not to zero. Similarly, the plot of activity at equilibrium as a function of the concentration of the protecting substrate or coenzyme reveals that neither NADH nor 2-oxoglutarate protects completely against inactivation. In initial-rate experiments, pyridoxal 5'-phosphate, used as an instantaneous inhibitor rather than a long-term inactivator, displayed non-competitive inhibition with respect to both 2-oxoglutarate and NADH. These results clearly indicate that, although there is mutual hindrance between the binding to the enzyme of pyridoxal 5'-phosphate, on the one hand, and 2-oxoglutarate or NADH on the other, binding is not mutually exclusive. These findings are discussed in terms of the two-step mechanism for inactivation by pyridoxal 5'-phosphate. It is concluded that lysine-126 cannot be solely responsible for binding either the substrate or the coenzyme, but could be essential for the catalytic step.     

Dogfish M4 lactate dehydrogenase: reversible inactivation by pyridoxal 5''-phosphate and complete protection in complexes that mimic the active ternary complex.

Dogfish M4 lactate dehydrogenase, like the corresponding pig enzyme, is inactivated by pyridoxal 5'-phosphate through modification of a single essential lysine residue. The activity is completely protected in the complexes E-NAD+-oxalate, E-NADH-oxamate and E-(NAD+-pyruvate adduct), but only partially protected in E-NAD+, E-NADH, E-NAD+-oxamate and E-NADH-oxalate.     

Strong plastid degradation is consistent within section Chondrophyllae,the most speciose lineage of Gentiana

Recovering phylogenetic relationships in lineages experiencing intense diversification has always been a persistent challenge in evolutionary studies, including in Gentiana section Chondrophyllae sensu lato (s.l.). Indeed, this subcosmopolitan taxon encompasses more than 180 mostly annual species distributed around the world. We sequenced and assembled 22 new plastomes representing 21 species in section Chondrophyllae s.l. In addition to previously released plastome data, our study includes all main lineages within the section. We reconstructed their phylogenetic relationships based on protein‐coding genes and recombinant DNA (rDNA) cistron sequences, and then investigated plastome structural evolution as well as divergence time. Despite an admittedly humble species cover overall, we recovered a well‐supported phylogenetic tree based on plastome data, and found significant discordance between phylogenetic relationships and taxonomic treatments. Our results show that G. capitata and G. leucomelaena diverged early within the section, which is then further divided into two clades. The divergence time estimation showed that section Chondrophyllae s.l. evolved in the second half of the Oligocene. We found that section Chondrophyllae s.l. had the smallest average plastome size (128 KB) in tribe Gentianeae (Gentianaceae), with frequent gene and sequence losses such as the ndh complex and its flanking regions. In addition, we detected both expansion and contraction of the inverted repeat (IR) regions. Our study suggests that plastome degradation parallels the diversification of this group, and illustrates the strong discordance between phylogenetic relationships and taxonomic treatments, which now need to be carefully revised.     

ALKBH5/MAP3K8 axis regulates PD-L1+ macrophage infiltration and promotes hepatocellular carcinoma progression

Hepatocellular carcinoma is one of the most common malignant tumors.M6A is a novel epigenetic modification that have been emerged as vital regulators for the progression of HCC. However, the regulatory role, clinical significance and the details of the modification, such as the impact on the local tumor environment, remain largely unclear. Our study showed that ALKBH5 was highly expressed in HCC and high ALKBH5 expression predicted a worse prognosis of HCC patients. Prediction of ALKBH5 function by tissue samples and single cell sequencing Gene Set Variation Analysis. Primary CD3 + T lymphocytes and bone marrow-derived macrophages were used to evaluate the effect of ALKBH5 on immune microenvironment. The results indicated that ALKBH5 promote HCC cell proliferation, metastasis and PD-L1+macrophage recruitment. Mechanistically the results showed that ALKBH5 regulates MAP3K8 expression in a m6A dependent manner which mediates the proliferation and metastasis of HCC cells. ALKBH5 also promotes the activation of JNK and ERK pathways through upregulating MAP3K8, thus regulating the expression of IL-8 and promoting macrophage recruitment. Taken together, these data show that ALKBH5 promotes HCC growth, metastasis and macrophage recruitment through ALKBH5/MAP3K8 axis and it may serve as a potential diagnostic marker and target for treatment of HCC patients.     

基于高通量测序的闽楠幼林根际土壤丛枝菌根真菌群落变化

[背景]闽楠是珍贵用材树种.阐明闽楠根际土壤微生物特征,对科学经营闽楠人工林有指导作用.[目的]明确闽楠人工林恢复过程中根际土壤丛枝菌根群落随林龄的变化特征.[方法]采用高通量Illumina MiSeq测序的方法,评估不同林龄闽楠幼林根际土壤丛枝菌根真菌(Arbuscular Mycorrhiza Fungi,AMF...     

城市建成区自生草本植物群落的物种多样性与功能多样性——以深圳市为例

城市自生草本植物的物种多样性和功能多样性直接影响城市生态系统的功能和稳定性,但目前相关研究依然很缺乏。以深圳市为例,基于建成区600个1hm²样地的现场调查数据,分析自生草本植物的群落结构、物种多样性、群落功能特征及功能多样性。结果显示:①调查共记录自生草本植物61科178属273种,其中多年生草本占54.6%,乡土植物占65.6%。②占明显优势的功能特征有中小型叶(91.85%)、草质叶(42.59%)、纸质叶(32.96%)、叶片无毛或近无毛(56.67%)、中等密度绒毛(40.37%)、叶面较粗糙(52.59%)、花期4-6个月(50.78%)、果期4-6个月(49.22%)、干果(86.03%)。③群落类型间功能丰富度FDp、功能离散度Rao二次熵差异极显著(P ＜ 0.01)、功能均匀度FEve差异显著(P ＜ 0.05)。④公园绿地的物种多样性指数明显高于其他三类绿地;不同绿地类型间的功能丰富度和功能离散度在滞尘、降噪、降温增湿及生物多样性保护方面都有极显著差异(P ＜ 0.01),功能均匀度只在滞尘及生物多样性保护方面差异极显著(P ＜ 0.01)。⑤各功能多样性指数均与Margalef指数、Simpson指数及Shannon-Wiener指数呈极显著正相关关系(P ＜ 0.01)。研究结论和方法为维护城市生态系统稳定性、建设生态宜居城市、促进城市可持续发展提供理论依据。