Construction of a cross-species cell landscape at single-cell level

Individual cells are basic units of life. Despite extensive efforts to characterize the cellular heterogeneity of different organisms, cross-species comparisons of landscape dynamics have not been achieved. Here, we applied single-cell RNA sequencing (scRNA-seq) to map organism-level cell landscapes at multiple life stages for mice, zebrafish and Drosophila. By integrating the comprehensive dataset of > 2.6 million single cells, we constructed a cross-species cell landscape and identified signatures and common pathways that changed throughout the life span. We identified structural inflammation and mitochondrial dysfunction as the most common hallmarks of organism aging, and found that pharmacological activation of mitochondrial metabolism alleviated aging phenotypes in mice. The cross-species cell landscape with other published datasets were stored in an integrated online portal—Cell Landscape. Our work provides a valuable resource for studying lineage development, maturation and aging.     

Why is the beautyberry so colourful? Evolution,biogeography, and diversification of fruit colours in Callicarpa (Lamiaceae)

Fruit colour is essential to seed dispersal, speciation, and biological diversity in global ecosystems. The relationship between fruit-colour variation and species diversification has long been of interest in evolutionary biology, but remains poorly understood at the genus level. Here, we used Callicarpa, a typical representative of pantropical angiosperm, to analyse whether fruit colours are correlated with biogeographic distribution, dispersal events, and diversification rate. We estimated a time-calibrated phylogeny for Callicarpa and reconstructed ancestral fruit colour. Utilizing phylogenetic methods, we estimated the major dispersal events across the phylogenetic tree and the most likely fruit colours related to each dispersal event, and tested whether the dispersal frequencies and distances of the four fruit colours between major biogeographical areas were equal. We then tested whether fruit colours are correlated with latitude, elevation, and diversification rate. Biogeographical reconstructions showed that Callicarpa originated in the East Asia and Southeast Asia during the Eocene (∼35.53 Ma) and diverse species diverged mainly in the Miocene and lasted into the Pleistocene. Large-scale dispersal events were significantly associated with violet-fruited lineages. Furthermore, different fruit colours were markedly correlated with different latitudes and elevations (e.g., violet fruits were correlated with higher latitudes and elevations; red fruits and black fruits with lower latitudes; white fruits with higher elevations). Notably, violet fruits were statistically associated with highest diversification rates, driving fruit colour variation among different regions globally. Our results contribute to further understanding why fruit colour is so variable at the genus level of angiosperms in different areas around the world.     

微杆菌Sneb159杀线虫活性物质的分离与鉴定

【目的】有关Microbacterium maritypicum在植物线虫生物防治方面的研究较少,探究菌株M. maritypicum Sneb159的杀线虫活性,明确菌株发酵液中具有杀线虫活性的物质,为生物农药的开发提供理论依据。【方法】本研究检测了菌株Sneb159发酵液对大豆胞囊线虫二龄幼虫的触杀活性;并以触杀活性为追踪,采用有机溶剂萃取、硅胶柱层析及半制备高效液相色谱等技术对菌株Sneb159发酵滤液中的活性物质进行分离纯化;采用核磁共振波谱对纯化物进行结构鉴定。【结果】菌株Sneb159具有杀线虫活性,在24 h和48 h处理组中线虫的死亡率均显著高于对照组。从菌株Sneb159发酵滤液中分离得到杀线虫活性物质A6,经结构鉴定确定该物质为苯乙酰胺。【结论】首次发现M. maritypicum对大豆胞囊线虫的触杀作用,并且明确活性物质为苯乙酰胺。结果表明菌株M. maritypicum Sneb159和苯乙酰胺在大豆胞囊线虫的生物防治方面具有较好的应用潜力。     

安徽巢湖地区石炭系和州组的四射珊瑚

石炭纪密西西比亚纪是四射珊瑚相对繁盛的时期。维宪晚期至谢尔普霍夫期, 受晚古生代大冰期和海西运动的影响, 西欧等不少地区的海相沉积发生相变, 四射珊瑚记录稀少。华南在此时仍广泛发育浅海相碳酸盐岩沉积, 含有丰富的四射珊瑚化石记录。通过对安徽省巢湖地区和州组四射珊瑚的研究, 共鉴定出11属15个种, 其中包含2比较种1、亲近种和3未定种。珊瑚动物群面貌具有典型华南大塘晚期四射珊瑚的特征, 属于Aulina rotiformis带(原Yuanophyllum带上部), 年代为谢尔普霍夫期。和州组的四射珊瑚组合可与湘中梓门桥组上部 Yuanophyllum带的Neoclisiophyllum yengtzeense–Koninckophyllum stellatum亚带和Lophophyllum lophyphylloidea亚带对比 , 也可与黔西赵家山组的 Palaeosmillia murchisoni murchisoni 组合带和 Lithostrotion decipiens–Dibunophyllum bipartitum组合带对比。根据珊瑚动物群的组成、生长形态、共生关系和围岩的岩性特征, 可判断动物群生活在相对浑浊、局限、富营养化的近岸浅海环境中。     

三峡大老岭山地常绿落叶阔叶混交林林隙干扰研究 I．林隙基本特征

为探讨我国亚热带山地常绿落叶阔叶混交林的林隙干扰特征,对三峡大老岭地区这一植被类型进行调查,分析了植被中林隙的数量、类型及成因;林隙形成木（GM）的类型、数量、物种构成和径级结构,以及林隙和GM的多尺度空间格局特征。结果表明1）林隙密度为11.7个*hm-2;冠林隙和扩展林隙分别占森林面积的11.09%和27.06%。平均每个林窗的形成木为4.5株;单株GM形成的林隙只占17.46%,其中翻倒木集群性最强。对林隙形成的贡献大小次序是翻倒木>折干>枯立>折枝。2）林隙成因方面冬雪和春、秋冻雨的影响最大;病害影响其次;树木间的牵连和撞击扩大了林隙的范围;陡峭的地形增大林隙形成的机率;干旱的影响很小。3）68种GM主要是森林建群种;常绿树种形成林隙的平均机率高于落叶种。4）GM的胸径结构表明本地森林林隙干扰十分频繁。     

猪流感病毒抗原表位基因表达载体构建与免疫原性分析

根据猪流感病毒血凝素蛋白基因(Heamuglutinine, HA)的核苷酸序列, 设计、筛选HA蛋白氨基酸序列的主要表位多肽4个, 将4个片段以柔性连接串联成模拟蛋白, 核苷酸约为300 bp, 体外扩增该模拟蛋白基因, 插入到原核表达载体pET30a(+)中, 转染宿主菌诱导表达, 结果获得分子量为20 kD的表达蛋白, 该蛋白可与抗His-tag抗体、抗猪流感病毒H1N1、H3N2亚型高免血清发生免疫学反应。纯化后免疫小鼠, ELISA及血凝抑制(Heamuglutinine inhibitor, HI)试验检测, 小鼠产生针对多肽抗原的血清抗体, 同时还可检测到H1N1、H3N2亚型SIV血凝抗体。流氏细胞仪检测免疫组外周血淋巴细胞高于对照组, 说明该模拟蛋白具有与H1N1、H3N2亚型猪流感病毒相似的免疫原性及反应原性, 为H1N1、H3N2血清亚型猪流感病毒疫苗研制提供了新手段。     

Synthesis of polyhydroxyalkanoate from palm oil and some new applications

Polyhydroxyalkanoate (PHA) is a potential substitute for some petrochemical-based plastics. This biodegradable plastic is derived from microbial fermentation using various carbon substrates. Since carbon source has been identified as one of the major cost-absorbing factors in PHA production, cheap and renewable substrates are currently being investigated as substitutes for existing sugar-based feedstock. Plant oils have been found to result in high-yield PHA production. Malaysia, being the world’s second largest producer of palm oil, is able to ensure continuous supply of palm oil products for sustainable PHA production. The biosynthesis and characterization of various types of PHA using palm oil products have been described in detail in this review. Besides, by-products and waste stream from palm oil industry have also demonstrated promising results as carbon sources for PHA biosynthesis. Some new applications in cosmetic and wastewater treatment show the diversity of PHA usage. With proper management practices and efficient milling processes, it may be possible to supply enough palm oil-based raw materials for human consumption and other biotechnological applications such as production of PHA in a sustainable manner.     

鸬鹚雏鸟的生长发育

对青海省青海湖国家级自然保护区内鸬鹚（Phalacrocorax carbo)雏鸟的生长发育进行了观察和研究。结果表明,在发育过程中,鸬鹚雏鸟跗足迹和嘴峰的发育早于翅和尾;通过体长与其它各生长指标的相对生长指数的计算。得出跗足迹和翅长的生长比体长快,嘴峰和尾长的生长比体长慢,另外,根据各生长指标特性的变化,将整个生长期划分为0-9日龄,10-23日龄,24-33日龄和34-离巢出飞4个生长阶段。     

云南30个水稻品种对水稻白叶枯病的抗性评价

【目的】水稻白叶枯病是一种严重危害水稻的细菌性病害,培育抗性品种是治理该病害的重要途径。因此,明确云南水稻材料对检疫性病害水稻白叶枯病的抗性,可以为该病害的防治与监测、水稻栽培的合理布局和良好抗性资源的获取提供依据。【方法】采用剪叶接种法测定云南稻区30个品种对7个不同致病型白叶枯病菌的抗性。【结果】在供试的30个云南水稻品种中,2个品种(玉粳16和JS42糯稻)对7个不同致病型菌株均表现为抗性;15个品种对7个致病型菌株均表现感病;对HEN11、SCYC-6、YN7、YN11、FUJ、YN241和PX099等7个致病型菌株表现抗性的水稻品种分别占26.67%、16.67%、23.33%、13.33%、6.67%、10.00%和20.00%。此外,区试材料的抗性比例高于主栽品种,地方稻未发现抗性品种。【结论】现在生产上的大部分水稻品种对优势致病型病原菌入侵的抵抗能力降低甚至丧失。针对云南地区的优势致病小种FUJ筛选得到2个抗性品种:玉粳16和JS42糯稻。