hNUDT16: a universal decapping enzyme for small nucleolar RNA and cytoplasmic mRNA

Human NUDT16 (hNUDT16) is a decapping enzyme initially identified as the human homolog to the Xenopus laevis X29. As a metalloenzyme, hNUDT16 relies on divalent cations for its cap-hydrolysis activity to remove m⁷GDP and m²²⁷GDP from RNAs. Metal also determines substrate specificity of the enzyme. So far, only U8 small nucleolar RNA (snoRNA) has been identified as the substrate of hNUDT16 in the presence of Mg²⁺. Here we demonstrate that besides U8, hNUDT16 can also actively cleave the m⁷GDP cap from mRNAs in the presence of Mg²⁺ or Mn²⁺. We further show that hNUDT16 does not preferentially recognize U8 or mRNA substrates by our cross-inhibition and quantitative decapping assays. In addition, our mutagenesis analysis identifies several key residues involved in hydrolysis and confirms the key role of the REXXEE motif in catalysis. Finally an investigation into the subcellular localization of hNUDT16 revealed its abundance in both cytoplasm and nucleus. These findings extend the substrate spectrum of hNUDT16 beyond snoRNAs to also include mRNA, demonstrating the pleiotropic decapping activity of hNUDT16.     

固醇调节元件结合蛋白与脂质代谢

固醇调节元件结合蛋白(sterol regulatory element-binding proteins,SREBPs)是脊椎动物细胞脂质稳态的转录调节物,可直接激活多个参与胆固醇、脂肪酸、甘油三酯、磷脂合成和摄取,以及辅助因子NADPH等基因的表达,从而调控胆固醇及脂肪酸等脂类的代谢过程。本文综述了SREBPs转运和活化的过程,以及调节细胞脂质稳态功能的分子机制,并探讨了其在脂代谢紊乱相关疾病发生中的重要作用。     

Diagnostic Evaluation of Des-Gamma-Carboxy Prothrombin versus α-Fetoprotein for Hepatitis B Virus-Related Hepatocellular Carcinoma in China: A Large-Scale,Multicentre Study

An efficient serum marker for hepatocellular carcinoma (HCC) is currently lacking and requires intensive exploration. We aimed to evaluate the performance of des-gamma-carboxy prothrombin (DCP) for identifying hepatitis B virus-related HCC in a large, multicentre study in China. A total of 1034 subjects in three cohorts (A, B, and C) including HCC and various non-HCC controls were enrolled from 4 academic medical centers in China from January 2011 to February 2014. Blind parallel detections were conducted for DCP and AFP. The area under the receiver operating characteristic curve (AUC) was used to evaluate the diagnostic efficacies. In cohort A, which comprised 521 subjects, including patients with HCC, liver metastasis, liver cirrhosis (LC), and liver hemangiomas as well as healthy controls (HCs), the accuracy of DCP for distinguishing HCC from various controls was 6.2–9.7% higher than that of AFP. In cohort B, which comprised 447 subjects, including patients with HCC, LC, and chronic hepatitis B as well as HC, the accuracy of DCP was further elevated (12.3–20.67% higher than that of AFP). The superiority of DCP to AFP was more profound in the surveillance of early HCC [AUC 0.837 (95% CI: 0.771–0.903) vs. 0.650 (0.555–0.745)] and AFP-negative HCC [AUC: 0.856 (0.798–0.914)] and in discriminating HCC from LC (accuracy: 92.9% vs.64.71%). Higher DCP levels were associated with worse clinical behaviors and shorter disease-free survival. DCP not only is complementary to AFP in identifying AFP-negative HCC and in excluding AFP-positive non-HCC (liver cirrhosis), but also demonstrates improved performance in HCC surveillance, early diagnosis, treatment response and recurrence monitoring in the HBV-related population.     

周期性机械牵张对肺泡Ⅱ型上皮细胞Cyr61表达的影响

目的研究周期性牵张肺泡Ⅱ型上皮细胞株A549细胞对Cyr61表达的影响。方法对肺泡Ⅱ型上皮细胞株A549细胞施加周期性机械牵张应力。加载频率0.5 Hz,加载时间2 h,加载应力分别为5%,15%,30%。加载应力为15%,加载频率0.5 Hz,加载时间分别0,15 min,30 min,60 min,120 min。每个实验均设立空白对照即不给予机械应力。用PCR法测定Cyr61 mRNA的表达,用western法测定Cyr61蛋白含量。结果随着加载应力的增加和加载时间的延长,Cyr61蛋白含量和mRNA表达均增加(P<0.05);施加不同加载幅度后,Cyr61蛋白含量和mRNA表达均增加(P<0.05)。结论肺泡Ⅱ型上皮细胞IL-8的产生和释放与周期性的机械牵张应力呈强度和时间依赖性。     

Renal Function Trajectories in Patients with Prior Improved eGFR Slopes and Risk of Death

Background

Multiple prior studies demonstrated that patients with early Chronic Kidney Disease (CKD) and positive estimated Glomerular Filtration Rate (eGFR) slopes experience increased risk of death. We sought to characterize patients with positive eGFR slopes, examine the renal function trajectory that follows the time period where positive slope is observed, and examine the association between different trajectories and risk of death.

Methods and Findings

We built a cohort of 204,132 United States veterans with early CKD stage 3; eGFR slopes were defined based on Bayesian mixed-effects models using outpatient eGFR measurements between October 1999 and September 2004; to build renal function trajectories, patients were followed longitudinally thereafter (from October 2004) until September 2013. There were 41,410 (20.29%) patients with positive eGFR slope and they exhibited increased risk of death compared to patients with stable eGFR slope (HR = 1.33, CI:1.31–1.35). There was an inverse graded association between severity of albuminuria and the odds of positive eGFR slope (OR = 0.94, CI:0.90–0.98, and OR = 0.76, CI:0.69–0.84 for microalbuminuria and albuminuria; respectively). Following the time period where positive eGFR slope is observed, we characterized 4 trajectory phenotypes: high eGFR intercept and positive trajectory (HIPT) (12.42%), intermediate intercept and mild negative trajectory (IIMNT) (60.04%), low intercept and fast negative trajectory (LIFNT)(23.33%), and high intercept and fast negative trajectory (HIFNT) (4.20%). Compared to IIMNT (reference group), HIPT is associated with younger age, dementia, HIV, chronic lung disease, peripheral artery disease, weight loss, and inversely associated with albuminuria; LIFNT and HIFNT were associated with diabetes, hypertension, cardiovascular disease, peripheral artery disease, and albuminuria. The risk of death at 9 years was lowest in IIMNT (HR = 1.12, CI:1.09–1.14), highest in HIPT (HR = 1.71, CI:1.63–1.79), and intermediate in LIFNT (HR = 1.36, CI:1.32–1.40) and HIFNT (HR = 1.56, CI:1.45–1.68).

Conclusions

Our results demonstrate that patients with positive eGFR slopes, when followed over longer period of time, follow 4 distinct trajectory phenotypes that have distinct demographic and clinical correlates and are differentially associated with risk of death.     

Pluripotency-associated miR-290/302 family of microRNAs promote the dismantling of naive pluripotency

The molecular mechanism controlling the dismantling of naive pluripotency is poorly understood. Here we show that microRNAs (miRNAs) have important roles during naive to primed pluripotency transition. Dgcr8^−/− embryonic stem cells (ESCs) failed to completely silence the naive pluripotency program, as well as to establish the primed pluripotency program during differentiation. miRNA profiling revealed that expression levels of a large number of miRNAs changed dynamically and rapidly during naive to primed pluripotency transition. Furthermore, a miRNA screen identified numerous miRNAs promoting naive to primed pluripotency transition. Unexpectedly, multiple miRNAs from miR-290 and miR-302 clusters, previously shown as pluripotency-promoting miRNAs, demonstrated the strongest effects in silencing naive pluripotency. Knockout of both miR-290 and miR-302 clusters but not either alone blocked the silencing of naive pluripotency program. Mechanistically, the miR-290/302 family of miRNAs may facilitate the exit of naive pluripotency in part by promoting the activity of MEK pathway and through directly repressing Akt1. Our study reveals miRNAs as an important class of regulators potentiating ESCs to transition from naive to primed pluripotency, and uncovers context-dependent functions of the miR-290/302 family of miRNAs at different developmental stages.     

文冠果花性别分化过程中形态与解剖结构特征和气象因子分析

通过外观形态观察,结合石蜡切片技术,同时检测气象数据,研究了文冠果花性别分化过程外部形态变化、内部解剖结构以及与气象因子之间的对应关系。结果显示：（1）文冠果的雄能花和雌能花在顶、侧花序上的分布差异极显著。（2）2种花在前期的形态结构无差异;雄蕊发育包括花药壁发育和小孢子母细胞时期（20 d）、小孢子发生（11 d）,对应的外部形态分别为芽膨大至露出芽体、花序迅速伸长;雌蕊发育包括胚珠发育（30 d）、大孢子发生（11 d）,对应外部形态为花序伸长、花蕾增大至萼片开裂。（3）雄能花和雌能花在雌、雄配子体形成期出现差异;雄能花大孢子母细胞四分体时期细胞停止分裂,外观为花蕾绿色,横径2.05~4.54 mm,纵径2.99~5.32 mm,此时≥K（生物学零度）有效积温230.6 ℃;雌能花雄蕊发育异常比雄能花雌蕊发育异常出现时间晚4 d。单核花粉粒在有丝分裂期呈液泡化衰败,花蕾横径12.25~18.3 mm,纵径8.3~10.98 mm,此时≥K有效积温264 ℃。研究认为,根据花芽外部形态变化,结合气象因子数据反映花芽内部结构变化,可以判断性别分化时期。研究发现,文冠果2种花都同时具有雌雄蕊,是后期雌雄蕊发育程度不同导致性别分化,故建议从功能角度分别定义为“雌能花”和“雄能花”更准确。     

我国3个桉树人工林种植区生产力影响因素

研究影响桉树人工林生产力的主要因素,对于提高桉树人工林生产力以及经营水平和合理利用树种都具有重要的意义。收集我国3个桉树人工林种植区(广东省、广西壮族自治区、云南省)关于生物量与生产力研究中的相关数据,对海拔、林分密度、林龄、年均温和年降水量与乔木层生物量进行了主成分分析与混合模型分析,探究各因素对我国桉树人工林生物量与生产力的影响。结果显示:年均温、年降水量、林龄、海拔和林分密度均是影响广东、广西、云南这3个省(区)桉树人工林生物量的主要因素,其中年降水量对这3个地区桉树人工林的生物量影响极其显著(P0.01),林龄和林分密度对桉树人工林的生物量影响显著(P0.05)。这是因为这3个地区都位于亚热带,温度都属于桉树生长的适宜温度,而这3个地区存在明显的干湿季,降水量在季节和地域上分布不均匀,导致这3个地区年降水量存在较明显的差异。因此,年降水量成为影响这3个地区桉树人工林生物量的关键因素。     

基于暴露度-恢复力-敏感度的城市适应气候变化能力评估与特征分析

城市是人口和社会经济活动最密集的地方,随着城市化进程和气候变化的发展,城市地区面临的气候风险和影响日益凸显。提升城市适应气候变化能力已成为城市应对气候变化挑战最重要的任务和途径。通过梳理和评价我国城市适应气候变化能力及其关键要素,以期为区域适应政策的制定和实施提供科学依据。基于IPCC适应能力评价框架,构建了基于暴露度-敏感度-恢复力的城市适应气候变化能力评估框架,进而筛选了19项指标,将指标划分为适应气候变化能力对应的5个等级,以熵权法赋权重;采用集对分析方法,评估我国286个地级市的适应气候变化能力水平,并分析了主要限制因素。结果显示,我国东部的适应能力整体高于西部地区,适应能力较低的区域主要集中在西北的甘肃陕西部分城市、华中的两湖和江西等城市以及西南的广西云南等城市;城市适应能力的各项限制要素主要表现为,适应能力高主要为暴露度-恢复力-敏感度的(低-高-低)的组合;适应能力低则分别包括暴露度-恢复力-敏感度(高-高-高)、(低-低-低)和(高-低-低)3种组合。提高城市适应气候变化能力,对西部西北的甘肃-陕西等城市,重点在于提升应对气候变化的恢复力,例如建立良好的灾后恢复与应急系统等;对于华中、西南等城市则以提高气候风险的防御能力为主。