ClpXP affects the cell metabolism of <Emphasis Type="Italic">Salmonella typhimurium</Emphasis> partially in an RpoS-dependent manner

Introduction

ClpXP protease is an important proteolytic system in Salmonella enterica serovar typhimurium (S. typhimurium). Inactivation of ClpXP by deletion of clpP resulted in overproduction of RpoS and a growth defect phenotype. Only one report has indicated that deleting rpoS can restore the growth of a S. typhimurium clpP mutant to the wild-type level. Whether overproduction of RpoS is responsible for the growth deficiency resulting from clpP disruption and how ClpXP affects the cell metabolism of S. typhimurium remain to be elucidated.

Objectives

The aim of this study is to investigate the effect of ClpXP on cell metabolism of S. typhimurium and explore the possible co-effect of RpoS associated with ClpXP in cell metabolism.

Method

We constructed a clpP rpoS double deletion mutant TT-19 (ΔclpP ΔrpoS TT-1) using a two-step phage transduction technique. We then compared the metabolite fingerprints of Salmonella rpoS deletion mutant TT-14 (ΔrpoS TT-1), clpP deletion mutant TT-16 (ΔclpP TT-1), and clpP rpoS double deletion mutant TT-19 (ΔclpP ΔrpoS TT-1) with those of the wild-type strain TT-1 by using gas chromatography coupled with mass spectrometry (GC–MS).

Results

Deletion of rpoS recovered only a part of the growth of Salmonella clpP mutant. Further metabolome analysis indicated that clpP disruption changed the levels of 16 extra- and 19 intracellular substances, while the extracellular concentrations of 4 compounds (serine, l-5-oxoproline, l-glutamic acid, and l-tryptophan) and intracellular concentrations of 10 compounds (l-isoleucine, glycine, serine, l-methionine, l-phenylalanine, malic acid, citric acid, urea, putrescine, and 6-hydroxypurine) returned to their wild-type levels when rpoS was also deleted.

Conclusion

ClpXP affects the cell metabolism of S. typhimurium partially in an RpoS-dependent manner.

     

Diversity and dynamics of the bacterial community involved in pig manure biodegradation in a microbial fermentation bed system

Overproduction of livestock manures with unpleasant odors causes significant environmental problems. The microbial fermentation bed (MFB) system is considered an effective approach to recycling utilization of agricultural byproducts and pig manure (PM). To gain a better understanding of bacterial communities present during the degradation of PM in MFB, the PM bacterial community was evaluated at different fermentation stages using 16S rRNA high throughput sequencing technology. The heatmap plot clustered five samples into short-term fermentation stage of 0–10 days and long-term fermentation stage of 15–20 days. The most abundant OTUs at the phylum level were Firmicutes, Actinobacteria and Proteobacteria in the long-term fermentation stage of PM, whereas Firmicutes, Bacteroidetes, and Proteobacteria predominated in the short-term fermentation stage of PM. At the genus level, organic degradation strains, such as Corynebacterium, Bacillus, Virgibacillus, Pseudomonas, Actinobacteria, Lactobacillus, Pediococcus were the predominate genera at the long-term fermentation stage, but were found only rarely in the short-term fermentation stage. C/N ratios increased and the concentration of the unpleasant odor substance 3-hydroxy-5-methylisoxazole (3-MI) decreased with prolonged period of fermentation. Redundancy analysis (RDA) demonstrated that the relative abundance of Firmicutes, Actinobacteria, Acidobacteria and Proteobacteria had a close relationship with degradation of 3-MI and increasing C/N ratio. These results provide valuable additional information about bacterial community composition during PM biodegradation in animal husbandry.     

Hydrothermal Synthesis of Monolithic Co3Se4 Nanowire Electrodes for Oxygen Evolution and Overall Water Splitting with High Efficiency and Extraordinary Catalytic Stability

Cobalt selenide has been proposed to be an effective low‐cost electrocatalyst toward the oxygen evolution reaction (OER) due to its well‐suited electronic configuration. However, pure cobalt selenide has by far still exhibited catalytic activity far below what is expected. Herein, this paper for the first time reports the synthesis of new monoclinic Co₃Se₄ thin nanowires on cobalt foam (CF) via a facile one‐pot hydrothermal process using selenourea. When used to catalyze the OER in basic solution, the conditioned monolithic self‐supported Co₃Se₄/CF electrode shows an exceptionally high catalytic current of 397 mA cm^?2 at a low overpotential (η) of 320 mV, a small Tafel slope of 44 mV dec^?1, a turnover frequency of 6.44 × 10^?2 s^?1 at η = 320 mV, and excellent electrocatalytic stability at various current densities. Furthermore, an electrolyzer is assembled using two symmetrical Co₃Se₄/CF electrodes as anode and cathode, which can deliver 10 and 20 mA cm^?2 at low cell voltages of 1.59 and 1.63 V, respectively. More significantly, the electrolyzer can operate at 10 mA cm^?2 over 3500 h and at 100 mA cm^?2 for at least 2000 h without noticeable degradation, showing extraordinary operational stability.     

Wearable All‐Fabric‐Based Triboelectric Generator for Water Energy Harvesting

Realizing energy harvesting from water flow using triboelectric generators (TEGs) based on our daily wearable fabric or textile has practical significance. Challenges remain on methods to fabricate conformable TEGs that can be easily incorporated into waterproof textile, or directly harvest energy from water using hydrophobic textile. Herein, a wearable all‐fabric‐based TEG for water energy harvesting, with additional self‐cleaning and antifouling properties is reported for the first time. Hydrophobic cellulose oleoyl ester nanoparticles (HCOENPs) are prepared from microcrystalline cellulose, as a low‐cost and nontoxic coating material to achieve superhydrophobic coating on fabrics, including cotton, silk, flax, polyethylene terephthalate (PET), polyamide (nylon), and polyurethane. The resultant PET fabric‐based water‐TEG can generate an instantaneous output power density of 0.14 W m^?2 at a load resistance of 100 MΩ. An all‐fabric‐based dual‐mode TEG is further realized to harvest both the electrostatic energy and mechanical energy of water, achieving the maximum instantaneous output power density of 0.30 W m^?2. The HCOENPs‐coated fabric provides excellent breathability, washability, and environmentally friendly fabric‐based TEGs, making it a promising wearable self‐powered system.     

Distinctive Supercapacitive Properties of Copper and Copper Oxide Nanocrystals Sharing a Similar Colloidal Synthetic Route

CuO and Cu₂O are non‐noble transition metal oxide supercapacitive materials with high theoretical specific capacitances above 1800 F g^?1. In this work, by adjusting organic additives of a colloidal system, Cu, Cu₂O, and CuO are grown in situ on nickel foam. CuO exhibits a specific capacitance of 1355 F g^?1 at 2 A g^?1 in 3 m KOH, a value well above those of Cu and Cu₂O (<500 F g^?1), and is superior to other known CuO electrodes. The CuO electrode exhibits 70% of its initial capacity, and the Columbic efficiency remains ≈100% after 7000 cycles at 4 A g^?1. Cu₂O exhibits the worst electrochemical performance, mainly due to the inactive barrier layer forming on the surface. This work provides an efficient synthetic platform for both comparable supercapacitive studies and cost‐effective electrochemical energy storage applications.     

An Improved Li–SeS2 Battery with High Energy Density and Long Cycle Life

Selenium–sulfur solid solutions are a class of potential cathode materials for high energy batteries, since they have higher theoretical capacities than selenium and improved conductivity over sulfur. Here, a high‐performance cathode material by confining 70 wt% of SeS₂ in a highly ordered mesoporous carbon (CMK‐3) framework with a polydopamine (PDA) protection sheath for novel Li–Se/S batteries is reported. With a relatively high SeS₂ mass loading of 2.6–3 mg cm^?2, the CMK‐3/SeS₂@PDA cathode exhibits a high capacity of >1200 mA h g^?1 at 0.2 A g^?1, excellent C‐rate capability of 535 mA h g^?1 at 5 A g^?1, and prolonged life over 500 cycles. Benefitting from the unique advantages of SeS₂ and the rationally designed host framework, this new cathode material demonstrates a feasible strategy to overcome the bottlenecks of current Li–S systems for high energy density rechargeable batteries.     

Efficient Sugarcane Transformation via <Emphasis Type="Italic">bar</Emphasis> Gene Selection

Genetic engineering provides new opportunities for improving economically important traits in sugarcane cultivars. In this study, an efficient Agrobacterium-mediated transformation system that uses the bar gene (a herbicide resistance gene that is used in conjunction with the herbicide Basta) as a selection marker was developed. Using this transformation selection system, all of the resistant plants after selection were nearly 100% polymerase chain reaction (PCR) detection positive and showed herbicide resistance. Each gram of sugarcane calli used for transformation produced approximately 12 transgenic lines. It took approximately 4 months to generate transgenic plants that measured 10 cm in height for greenhouse transplantation.     

Distribution of shrublands in relation to soil and climate in mid-subtropical China

Aims Understanding relationships between vegetation and environments is of importance for ecosystem restoration and management. However, information on how environments influence the floristic patterns of shrublands is lack, especially in the subtropical China. In this study, we explored how environments regulate species composition of shrublands at landscape scale in mid-subtropical China.Methods We investigated species composition and measured the climate and soil environments for 207 shrubland plots in mid-subtropical China (24°39′–30°08′N, 108°47′–114°15′E). We applied a hierarchical cluster analysis and indicator species analysis based on the Bray–Curtis similarity index to identify the main shrubland types and employed principal coordinate analysis (PCoA) to explore the relationship between floristic composition and environment.Important findings We identified four shrubland types occurring in different environmental conditions. Montane shrubland, dominated by species suitable for cool climates (e.g. Rhododendron simsii), were distributed in steep areas at comparatively high altitudes; foothill shrubland, dominated by mesophilous species (e.g. Loropetalum chinense), were distributed in low mountains and hills; pioneer shrubland, dominated by fast grow and short-life cycles species (e.g. Rhus chinensis), were distributed at low altitudes with dense population; and finally, limestone shrubland, dominated by calcicole plants (e.g. Coriaria nepalensis), were distributed in the extensive karst areas. Communities occurring in high pH soils were completely separated from those in low pH soils according to the hierarchical cluster analysis. PCoA ordination associated the four types with distinct edaphic and climatic gradients. Soil pH explained 63.3% of variation in PCoA, followed by soil depth and soil bulk density.     

GID1 modulates stomatal response and submergence tolerance involving abscisic acid and gibberellic acid signaling in rice

Plant responses to abiotic stresses are coordinated by arrays of growth and developmental programs.Gibberellic acid(CA) and abscisic acid(ABA) play critical roles in the developmental programs and environmental responses,respectively,through complex signaling and metabolism networks.However,crosstalk between the two phytohormones in stress responses remains largely unknown.In this study,we report that CIBBERELLIN-INSENSITIVE DWARF 1(GID1),a soluble receptor for GA,regulates stomatal development and patterning in rice(Oryza sativa L.).The gid1 mutant showed impaired biosynthesis of endogenous ABA under drought stress conditions,but it exhibited enhanced sensitivity to exogenous ABA.Scanning electron microscope and infrared thermal image analysis indicated an increase in the stomatal conductance in the gid1 mutant under drought conditions.Interestingly,the gid1 mutant had increased levels of chlorophyll and carbohydrates under submergence conditions,and showed enhanced reactive oxygen species(ROS)-scavenging ability and submergence tolerance compared with the wild-type.Further analyses suggested that the function of GID1 in submergence responses is partially dependent on ABA,and GA signaling by GID1 is involved in submergence tolerance by modulating carbohydrate consumption.Taken together,these findings suggest GID1 plays distinct roles in stomatal response and submergence tolerance through both the ABA and GA signaling pathways in rice.