Shallow genetic divergence indicates a Congo–Nile riverine connection for the softshell turtle Trionyx triunguis

We sequenced 20 new, field-collected individuals for up to seven genes to explore the phylogeography and conservation genetics of the threatened Nile softshell turtle Trionyx triunguis, including the first known-locality specimen from sub-Saharan Africa. Samples from Cameroon (West Africa), the Mediterranean and Nile River differed by at most a single nucleotide per gene, indicating the potential for a recent connection between these currently disjunct populations via the Nile–Congo River systems. Recently reported mitochondrial diversity between Mediterranean and “sub-Saharan” samples of the Nile softshell indicate that significant divergence exists across the species’ range, but that variation cannot be fully incorporated into our analysis since those samples lack specific locality data.     

Lack of an association of programmed cell death-1 PD1.3 polymorphism with risk of hepatocellular carcinoma susceptibility in Turkish population: A case–control study

Aim

The programmed cell death-1 (PD-1) is a potent immunoregulatory molecule which is responsible for the negative regulation of T-cell activation and peripheral tolerance. Recently, overexpression of PD-1 has been reported to contribute to immune system evasion and poor survival of hepatocellular carcinoma (HCC). A common single nucleotide polymorphism in intron 4 of PD-1 gene called PD-1.3 has been reported to influence PD-1 expression, but its association with HCC has yet to be investigated. The aim of the present study was to investigate whether this polymorphism could be involved in the risk of HCC susceptibility.

Methods

The genotype frequency of PD-1.3 polymorphism was determined by using a polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) method in 236 subjects with HCC and 236 cancer-free control subjects matched on age, gender, smoking and alcohol status.

Results

No statistically significant differences were found in the genotype distributions of the PD-1.3 polymorphism among HCC and cancer-free control subjects (P = 0.22).

Conclusion

Our results demonstrate for the first time that the PD-1.3 polymorphism has not been in any major role in genetic susceptibility to hepatocellular carcinogenesis, at least in the population studied here. Independent studies are needed to validate our findings in a larger series, as well as in patients of different ethnic origins.     

Construction a hybrid biosorbent using Scenedesmus quadricauda and Ca-alginate for biosorption of Cu(II), Zn(II) and Ni(II): kinetics and equilibrium studies

The potential use of the immobilized fresh water algae (in Ca-alginate) of Scenedesmus quadricauda to remove Cu(II), Zn(II) and Ni(II) ions from aqueous solutions was evaluated using Ca-alginate beads as a control system. Ca-alginate beads containing immobilized algae were incubated for the uniform growth at 22 degrees C for 5d ays. Adsorption of Cu(II), Zn(II) and Ni(II) ions on the immobilized algae showed highest values at around pH 5.0. Adsorption of Cu(II), Zn(II) and Ni(II) ions on the immobilized algae increased as the initial concentration of metal ions increased in the medium. The maximum adsorption capacities of the immobilized algal biosorbents for Cu(II), Zn(II) and Ni(II) were 75.6, 55.2 and 30.4 mg/g (or 1.155, 0.933 and 0.465 mmol/g) biosorbent, respectively. When the heavy metal ions were in competition, the amounts of adsorbed metal ions were found to be 0.84 mol/g for Cu(II), 0.59 mol/g for Ni(II) and 0.08 mol/g for Zn(II), the immobilised algal biomass was significantly selective for Cu(II) ions. The adsorption-equilibrium was also represented with Langmuir, Freundlich and Dubinin-Radushkevich adsorption isotherms. The adsorption of Cu(II), Zn(II) and Ni(II) ions on the immobilized algae followed second-order kinetic.     

Characterisation of tyrosinase immobilised onto spacer-arm attached glycidyl methacrylate-based reactive microbeads

Immobilisation of tyrosinase onto modified poly(methyl methacrylate–glycidyl methacrylate–divinyl benzene), poly(MMA–GMA–DVB), microbeads was studied. The epoxy group containing poly(MMA–MMA–DVB) microbeads were prepared by suspension polymerisation. The epoxy groups of the poly(MMA–GMA–DVB) microbeads was converted into amino groups with either ammonia or 1,6-diaminohexane (i.e., spacer-arm). Tyrosinase was then covalently immobilised on aminated and the spacer-arm-attached poly(MMA–GMA–DVB) microbeads using glutaric dialdehyde as a coupling agent. Incorporation of the spacer-arm resulted an increase in the apparent activity of the immobilised tyrosinase with respect to the enzyme immobilised on the aminated microbeads. The activity yield of the immobilised tyrosinase on the spacer-arm-attached poly(MMA–GMA–DVB) microbeads was 68%, and this was 51% for the enzyme, which was immobilised on the aminated microbeads. Both immobilised tyrosinase preparation has resistance to temperature inactivation as compared to that of the free form. The temperature profiles were broader for both immobilised preparations than that of the free enzyme. Kinetic parameters were determined for immobilised tyrosinase preparations as well as for the free enzyme. The values of the Michaels constants (K_m) for all the immobilised tyrosinase preparations were significantly larger, indicating decreased affinity by the enzyme for its substrate, whereas V_max values were smaller for the both immobilised tyrosinase preparations. In a 40 h continuous operation with spacer-arm-attached poly(MMA–GMA–DVB) microbeads at 30 °C, only 3% of immobilised tyrosinase activity was lost. The operational inactivation rate constant (k_opi) of the immobilised tyrosinase was 1.25×10⁻⁵ min⁻¹.     

Affinity membrane chromatography: relationship of dye-ligand type to surface polarity and their effect on lysozyme separation and purification

Two different dye-ligands, i.e. Procion Brown MX-5BR (RB-10) and Procion Green H-4G (RG-5) were immobilised onto poly(2-hydroxyethylmethacrylate) (pHEMA) membranes. The polarities of the affinity membranes were determined by contact angle measurements. Separation and purification of lysozyme from solution and egg white were investigated. The adsorption data was analysed using two adsorption kinetic models the first order and the second order to determine the best-fit equation for the separation of lysozyme using affinity membranes. The second-order equation for the adsorption of lysozyme on the RB-10 and RG-5 immobilised membranes systems is the most appropriate equation to predict the adsorption capacity for the affinity membranes. The reversible lysozyme adsorption on the RB-10 and RG-5 did not follow the Langmuir model, but obeyed the Temkin and Freundlich isotherm model. Separation and purification were monitored by determining the lysozyme activity using Micrococcus lysodeikticus as substrate. The purities of the eluted lysozyme, as determined by HPLC, were 76 and 92% with recovery 63 and 77% for RB-10 and RG-5 membranes, respectively. For the separation and purification of lysozyme the RG-5 immobilised membrane provided the best results. The affinity membranes are stable when subjected to sanitization with sodium hydroxide after repeated adsorption-elution cycles.     

Invertase reversibly immobilized onto polyethylenimine-grafted poly(GMA–MMA) beads for sucrose hydrolysis

The epoxy group containing poly(glycidyl methacrylate-co-methylmethacrylate) poly(GMA–MMA) beads were prepared by suspension polymerisation and the beads surface were grafted with polyethylenimine (PEI). The PEI-grafted beads were then used for invertase immobilization via adsorption. The immobilization of enzyme onto the poly(GMA–MMA)–PEI beads from aqueous solutions containing different amounts of invertase at different pH was investigated in a batch system. The maximum invertase immobilization capacity of the poly(GMA–MMA)–PEI beads was about 52 mg/g. It was shown that the relative activity of immobilized invertase was higher then that of the free enzyme over broader pH and temperature ranges. The Michaelis constant (K_m) and the maximum rate of reaction (V_max) were calculated from the Lineweaver–Burk plot. The K_m and V_max values of the immobilized invertase were larger than those of the free enzyme. The immobilized enzyme had a long-storage stability (only 6% activity decrease in 2 months) when the immobilized enzyme preparation was dried and stored at 4 °C while under wet condition 43% activity decrease was observed in the same period. After inactivation of enzyme, the poly(GMA–MMA)–PEI beads can be easily regenerated and reloaded with the enzyme for repeated use.     

Purification of glutathione S‐transferase enzyme from quail liver tissue and inhibition effects of (3aR,4S,7R,7aS)‐2‐(4‐((E)‐3‐(aryl)acryloyl)phenyl)‐3a,4,7,7a‐tetrahydro‐1H‐4,7‐methanoisoindole‐1,3(2H)‐dione derivatives on the enzyme activity

The use of quail meat and eggs has made this animal important in recent years, with its low cost and high yields. Glutathione S‐transferases (GST, E.C.2.5.1.18) are an important enzyme family, which play a critical role in detoxification system. In our study, GST was purified from quail liver tissue with 47.88‐fold purification and 12.33% recovery by glutathione agarose affinity chromatography. The purity of enzyme was checked by SDS‐PAGE method and showed a single band. In addition, inhibition effects of (3aR,4S,7R,7aS)‐2‐(4‐((E)‐3‐(aryl)acryloyl)phenyl)‐3a,4,7,7a‐tetrahydro‐1H‐4,7methanoisoindole‐1,3(2H)‐dion derivatives ( 1a–g ) were investigated on the enzyme activity. The inhibition parameters (IC₅₀ and K_i values) were calculated for these compounds. IC₅₀ values of these derivatives ( 1a–e ) were found as 23.00, 15.75, 115.50, 10.00, and 28.75 μM, respectively. K_i values of these derivatives ( 1a–e ) were calculated in the range of 3.04 ± 0.50 to 131.50 ± 32.50 μM. However, for f and g compounds, the inhibition effects on the enzyme were not found.     

Airborne pollen grains in Yalova,Turkey, 2004

In this study, airborne pollen grains of Yalova province were investigated using VPSS 2000 from January to December 2004. During studying period, a total of 22409 pollen grains/m³ which belonged to 46 taxa and 74 unidentified pollen grains were recorded. From the identified taxa, 26 belong to arboreal and 20 to non-arboreal plants. Total pollen grains consist of 80.50% arboreal, 19.17% non-arboreal plants and 0.33% unidentified pollen grains. In the investigated region, from arboreal plant taxa Platanus spp. (29.08%), Cupressaceae/Taxaceae (21.22%), Pinus spp. (7.34%), Alnus spp. (4.75%), Castanea spp. (3.03%), Quercus spp. (3.07%), Olea spp. (2.50%), Acer spp. (2.21%), Corylus spp. (1.41%) and Fagus spp. (1.15%), and from non-arboreal plant taxa Poaceae (10.01%), Asteraceae (2.86%), Plantago spp. (1.47%) and Artemisia spp. (1.11%) were responsible for the greatest amounts of pollen.