新疆三种独尾草的适宜分布及其对未来气候变化的响应

研究国内仅分布于新疆的3种短命植物阿尔泰独尾草(Eremurus altaicus)、粗柄独尾草(Eremurus inderiensis)和异翅独尾草(Eremurus anisopterus)的适宜分布及其对未来气候的可能响应,对新疆短命植物资源的分布、利用与科学保护具有重要意义。共收集了64个自然分布点,筛选了6个气候因子和2个地形因子数据,利用MaxEnt模型和地理信息系统ArcGIS软件模拟了当前气候情景下3种独尾草的生态适宜性,探讨影响3种植物分布的主导因子及其数值范围,预测3种独尾草的适宜分布对未来气候变化(2001—2040年、2041—2080年,基于温室气体中等排放情景：SSP2-4.5共享社会经济路径)的可能响应。结果表明：(1)基准气候下,3种独尾草在新疆的适宜分布存在较大差异：阿尔泰独尾草主要分布于伊犁河谷、天山北麓、阿尔泰山中段和准噶尔西部山地;两种沙生独尾草均分布于天山中段的绿洲-荒漠区过渡带,古尔班通古特沙漠西南部沙地;(2)最干月降水量(1—25mm)主要限制了阿尔泰独尾草的适宜分布;温度季节性变动指数(1150—1672)主要限制了两种沙生独尾草的适...     

甘肃宝积山盆地中侏罗世植物群地质时代及植物区系探讨

本文对甘肃宝积山盆地中侏罗世植物群地质时代及植物区系进行了探讨,共统计植物大化石18属53种,主要包括银杏纲10属24种,真蕨纲5属22种,苏铁纲1属3种,松柏纲1属2种,楔叶纲1属2种。该植物群在组成特征上表现为银杏类、真蕨类植物繁盛,其他植物类群相对贫乏。基于该植物群特征与国内其他植物群的对比,提出其地质时代为中侏罗世Aalenian期–Bajocian期。通过哈曼、欧式距离、罗杰斯–塔尼莫特和索卡尔–施尼斯4种方法对宝积山盆地及中国北方其余11个中侏罗世植物群进行系统聚类分析,在此基础上进一步划分了中国北方植物区系。通过计算属、种相似性系数,探讨宝积山邻近植物区系间的亲缘关系,结果表明宝积山植物区系与同属西北地区的华亭植物区系关系较为亲近。     

Circular RNA circDVL1 inhibits clear cell renal cell carcinoma progression through the miR-412-3p/PCDH7 axis

Clear cell renal cell carcinoma (ccRCC) is a primary kidney cancer with high aggressive phenotype and extremely poor prognosis. Accumulating evidence suggests that circular RNAs (circRNAs) play pivotal roles in the occurrence and development of various human cancers. However, the expression, clinical significance and regulatory role of circRNAs in ccRCC remain largely unclear. Here we report that circDVL1 to be reduced in the serums and tissues from ccRCC patients, and to negatively correlate with ccRCC malignant features. Overexpression of circDVL1 inhibits proliferation, induces G1/S arrest, triggers apoptosis, and reduces migration and invasion in different ccRCC cells in vitro. Correspondingly, circDVL1 overexpression suppresses ccRCC tumorigenicity in a mouse xenograft model. Mechanistically, circDVL1 serves as a sponge for oncogenic miR-412-3p, thereby preventing miR-412-3p-mediated repression of its target protocadherin 7 (PCDH7) in ccRCC cells. Collectively, our results demonstrate that circDVL1 exerts tumor-suppressive function during ccRCC progression through circDVL1/miR-412-3p/PCDH7 axis, and suggest that circDVL1 could be a novel diagnostic and prognositc marker and therapeutic target for ccRCC.     

CRL4-DCAF8L1 Regulates BRCA1 and BARD1 Protein Stability

BRCA1 is frequently down-regulated in breast cancer, the underlying mechanism is unclear. Here we identified DCAF8L1, an X-linked gene product, as a DDB1-Cullin associated Factor (DCAF) for CUL4 E3 ligases to target BRCA1 and BARD1 for proteasomal degradation. Forced expression of DCAF8L1 caused reduction of BRCA1 and BARD1, and impaired DNA damage repair function, conferring increased sensitivity to irradiation and DNA damaging agents, as well as Olaparib, a PARPi anticancer drug; while depletion of DCAF8L1 restored BRCA1 and suppressed the growth of its xenograft tumors. Furthermore, the expression of DCAF8L1 was induced in human H9 ES cells during transition from primed to naïve state when Xi chromosome was reactivated. Aberrant expression of DCAF8L1 was observed in human breast fibroadenoma and breast cancer. These findings suggest that CRL4^DCAF8L1 is an important E3 ligase that may participate in the development of breast cancer, probably through regulating the stability of BRCA1 and BARD1 tumor suppressor, linking BRCA1 and X chromosome inactivation to breast carcinogenesis.     

TNFAIP8 protein functions as a tumor suppressor in inflammation-associated colorectal tumorigenesis

Tumor necrosis factor-α-induced protein 8 (TNFAIP8 or TIPE) is a member of the TNFAIP8 family. While TIPE was broadly considered to be pro-cancerous, its precise roles in carcinogenesis especially those of the intestinal tract are not clear. Here, we show that genetic deletion of TIPE in mice exacerbated chemical-induced colitis and colitis-associated colon cancer. Loss of TIPE exacerbated inflammatory responses and inflammation-associated dysbiosis, leading to the activation of NF-κB and STAT3, and it also accelerated dysplasia, DNA damage and proliferation of intestinal epithelial cells. We further show that colon microbiota were essential for increased tumor growth and progression in Tipe^−/− mice. The tumor suppressive function of TIPE originated primarily from the non-hematopoietic compartment. Importantly, TIPE was downregulated in human colorectal cancers, and patients with low levels of Tipe mRNA were associated with reduced survival. These results indicate that TIPE serves as an important modulator of colitis and colitis-associated colon cancer.Subject terms: Cancer microenvironment, Chronic inflammation     

scGET: Predicting Cell Fate Transition During Early Embryonic Development by Single-cell Graph Entropy

During early embryonic development, cell fate commitment represents a critical transition or"tipping point"of embryonic differentiation, at which there is a drastic and qualitative shift of the cell populations. In this study, we presented a computational approach, scGET, to explore the gene–gene associations based on single-cell RNA sequencing (scRNA-seq) data for critical transition prediction. Specifically, by transforming the gene expression data to the local network entropy, the single-cell graph entropy (SGE) value quantitatively characterizes the stability and criticality of gene regu-latory networks among cell populations and thus can be employed to detect the critical signal of cell fate or lineage commitment at the single-cell level. Being applied to five scRNA-seq datasets of embryonic differentiation, scGET accurately predicts all the impending cell fate transitions. After identifying the"dark genes"that are non-differentially expressed genes but sensitive to the SGE value, the underlying signaling mechanisms were revealed, suggesting that the synergy of dark genes and their downstream targets may play a key role in various cell development processes. The application in all five datasets demonstrates the effectiveness of scGET in analyzing scRNA-seq data from a network perspective and its potential to track the dynamics of cell differentiation. The source code of scGET is accessible at https://github.com/zhongjiayuna/scGET_Project.