Vitamin Pharmacogenomics: New Insight into Individual Differences in Diseases and Drug Responses

Vitamins are vital to sustain normal physiological function, metabolism, and growth for all living organisms. Being an integral component of coenzyme, vitamins can affect the catalytic activities of many enzymes and the expression of drug transporters. Genetic variations in metabolism and/or transporter genes of drugs can influence the exposure of the human body to drugs and/or their active metabolites, thus contributing to the variations in drug responses and toxicities. Nonetheless, pharmacogenomics studies on nutrients have been rarely summarized. In this article, we reviewed recent progress on vitamin pharmacogenomics, for a better understanding on the influence of vitamin-related gene polymorphisms on inter-individual differences in diseases and drug efficacy and safety.     

In Vitro Physiological Responses of Fusarium oxysporum f. sp. niveum to Exogenously Applied Syringic Acid

ABSTRACT. Plant–microbe interactions are often accompanied by allelochemicals, such as syringic acid, released from the host plant. To explore the role of phenolic acids released from crop host plants in response to pathogen invasion, we examined the allelopathic effect of an artificially applied syringic acid on Fusarium oxysporum f. sp. niveum . We demonstrated that the growth and the conidial germination rate of F. oxysporum f. sp. niveum were stimulated at lower concentrations of syringic acid, though inhibited by higher dosage compared with control. The yield of fungus mycotoxin was increased from 60.9% to 561.5%. We conclude that syringic acid can be considered as a allelochemical inducer, stimulating the relative virulence factors of invading pathogens.     

Agrobacterium‐produced and exogenous cytokinin‐modulated Agrobacterium‐mediated plant transformation

Agrobacterium tumefaciens is a plant pathogenic bacterium that causes neoplastic growths, called ‘crown gall’, via the transfer and integration of transferred DNA (T‐DNA) from the bacterium into the plant genome. We characterized an acetosyringone (AS)‐induced tumour‐inducing (Ti) plasmid gene, tzs (trans‐zeatin synthesizing), that is responsible for the synthesis of the plant hormone cytokinin in nopaline‐type A. tumefaciens strains. The loss of Tzs protein expression and trans‐zeatin secretions by the tzs frameshift (tzs‐fs) mutant is associated with reduced tumorigenesis efficiency on white radish stems and reduced transformation efficiencies on Arabidopsis roots. Complementation of the tzs‐fs mutant with a wild‐type tzs gene restored wild‐type levels of trans‐zeatin secretions and transformation efficiencies. Exogenous application of cytokinin during infection increased the transient transformation efficiency of Arabidopsis roots infected by strains lacking Tzs, which suggests that the lower transformation efficiency resulted from the lack of Agrobacterium‐produced cytokinin. Interestingly, although the tzs‐fs mutant displayed reduced tumorigenesis efficiency on several tested plants, the loss of Tzs enhanced tumorigenesis efficiencies on green pepper and cowpea. These data strongly suggest that Tzs, by synthesizing trans‐zeatin at early stage(s) of the infection process, modulates plant transformation efficiency by A. tumefaciens.     

铜绿丽金龟对圆偏振光的行为和视网膜电位反应

圆偏振光在地球环境中是很少见的, 来自珠宝金龟甲体壁反射圆偏振光是稀有的自然资源之一。铜绿丽金龟Anomala corpulenta Motschulsky与其他珠宝金龟甲一样其体壁能够反射左旋圆偏振光。为了解铜绿丽金龟对圆偏振光的感知能力, 本研究利用室内行为、 田间诱集与视网膜电位(electroretinogram, ERG)等方法研究了铜绿丽金龟对圆偏振光的响应。室内行为研究结果表明, 铜绿丽金龟对左旋圆偏振光与右旋圆偏振光的趋光反应明显低于非偏振光, 避光反应明显大于非偏振光, 且对左旋圆偏振光的趋、 避光反应均大于右旋圆偏振光。田间选择试验结果显示, 铜绿丽金龟对左旋和右旋圆偏振光的选择明显低于非偏振光, 且右旋大于左旋圆偏振光。电生理学研究结果表明, 左旋和右旋圆偏振光与非偏振光一样, 均能引发铜绿丽金龟的ERG反应, 且无明显差异。这些研究结果表明铜绿丽金龟体壁能够反射产生左旋圆偏振光, 且能够感知和区分左旋和右旋圆偏振光, 说明铜绿丽金龟存在偏振视觉, 具有圆偏振光敏感性。     

不同光环境对海南龙血树幼苗表型可塑性及生存策略的影响

为了解光照对海南龙血树(Dracaena cambodiana)幼苗生长的影响,研究了不同光照环境下海南龙血树幼苗形态、生理特性和生物量分配的变化,并分析了其生态适应性。结果表明,海南龙血树幼苗的形态、生理和生物量分配指标在不同光照强度间存在显著差异,各指标的可塑性指数为0.08~0.86,其中根茎叶及总生物量的可塑性指数普遍较高(0.67~0.86),表明海南龙血树幼苗有较好的光照适应性,其策略主要是通过调整根茎叶生物量的分配来适应光照的变化。随着光照强度的降低,海南龙血树幼苗的比叶面积、叶根比呈现显著增大趋势,表明幼苗可通过增加单株叶面积比例,扩大光合作用面积,有效调节自身生物量配置。37.3%自然光照(L2)是海南龙血树幼苗生长的最佳光照强度。现存海南龙血树生境改变,生境缺少林荫以致光照强度过大,不利于幼苗根系生长,难以度过干旱季节,可能是海南龙血树自然更新失败的重要原因之一。     

新Y-STR DYS605在山西汉族人群中的多态性分布

为了应用更多的Y染色体特异性STR基因座以用于法医学和人类遗传学研究,本文用PCR结合PAGE技术检测128例山西汉族无关男性DYS605等位基因分布状况。结果显示：山西地区汉族男性DYS605基因座观察到22,21,20,19,18共5个等位基因,基因频率分别为0.0156;0.1797;0.4531;0.2891;0.0625。等位基因20和19之间的电泳距离在非变性胶上非常接近,要有足够的电泳距离才能区分。测序表明该基因座包括3个串联重复区,其中一个为可变重复区。20例女性DNA未发现扩增产物。Abstract: We study the polymorphism at DYS605 ,a new tetranucleotide Y-STR locus,in a Chinese Han population of Shanxi to meet the need of more genetic markers in forensic practice and genetic analysis. DNA were extracted from 128 unrelated male venous blood, and amplified using GDB primers. PCR products were detected using non-denaturing polyacrylamide gel electrophoresis and silver staining. Five alleles named 22,21,20,19,18 were observed with frequency of 0.0156;0.1797;0.4531;0.2891;0.0625. PCR products were not found in female DNA. Using a long enough gel for a long electrophoresis time is strongly encouraged because the rung between allele 20 and allele19 is smaller than expected. Allele sequences show that the repetitive units of DYS605 were composed with the variant units and non-variant units.     

Integrated species delimitation and conservation implications of an endangered weevil Pachyrhynchus sonani (Coleoptera: Curculionidae) in Green and Orchid Islands of Taiwan

Oceanic islands are productive habitats for generating new species and high endemism, which is primarily due to their geographical isolation, smaller population sizes and local adaptation. However, the short divergence times and subtle morphological or ecological divergence of insular organisms may obscure species identity, so the cryptic endemism on islands may be underestimated. The endangered weevil Pachyrhynchus sonani Kôno (Coleoptera: Curculionidae: Entiminae: Pachyrhynchini) is endemic to Green Island and Orchid Island of the Taiwan‐Luzon Archipelago and displays widespread variation in coloration and host range, thus raising questions regarding its species boundaries and degree of cryptic diversity. We tested the species boundaries of P. sonani using an integrated approach that combined morphological (body size and shape, genital shape, coloration and cuticular scale), genetic (four genes and restriction site‐associated DNA sequencing, RAD‐seq) and ecological (host range and distribution) diversity. The results indicated that all the morphological datasets for male P. sonani, except for the colour spectrum, reveal overlapping but statistically significant differences between islands. In contrast, the morphology of the female P. sonani showed minimum divergence between island populations. The populations of P. sonani on the two islands were significantly different in their host ranges, and the genetic clustering and phylogenies of P. sonani established two valid evolutionary species. Integrated species delimitation combining morphological, molecular and ecological characters supported two distinct species of P. sonani from Green Island and Orchid Island. The Green Island population was described as P. jitanasaius sp.n. Chen & Lin, and it is recommended that its threatened conservation status be recognized. Our findings suggest that the inter‐island speciation of endemic organisms inhabiting both islands may be more common than previously thought, and they highlight the possibility that the cryptic diversity of small oceanic islands may still be largely underestimated.     

Visualization of chromatin folding patterns in chicken erythrocytes by atomic force microscopy （AFM）

The organization of the higher order structure of chromatin in chicken erythrocytes has been examined with tapping-mode scanning force microscopy under conditions close to their native envirinment.Reproducible highresolution AFM images of chromatin compaction at several levels can be demonstrated.An extended beads-on-astring (width of - 15-20nm,height of - 2-3nm for each individual nucleosome) can be consistently observed.Furthermore,superbeade (width of - 40nm,height of - 7nm) are demonstrated.Visualization of the solenoid conformation at the level of 30nm chromatin fiber is attained either by using AFM or by using electron microscopy.In addition,tightly coiled chromatin fibers (- 50-60nm and - 90-110nm) can be revealed.Our data suggest that the chromatin in the interphase nucleus of chicken erythrocyte represents a high-order conformation and AFM provides useful high-resolution structural information concerning the folding pattern of interphase chromatin fibers.