Genetic variation of the Chinese longsnout catfish Leiocassis longirostris in the Yangtze River revealed using mitochondrial DNA cytochrome b sequences

The mitochondrial DNA cytochrome b of 132 Leiocassis longirostris collected from 12 localities in the upper to lower reaches of the Yangtze River were amplified and partially sequenced using the PCR technique. The results showed that 27 nucleotide sites were variable along 817 bp length of homologous sequence (3.3%), base substitutions happened mostly at the third codon position. A total of 22 haplotypes were identified, which were characterized with moderate haplotype diversity (h = 0.5417 ± 0.0519), but low nucleotide diversity (π = 0.0019 ± 0.0012). Median-joining network analysis revealed star-shaped patterns with one common central haplotype (H3), whereas mismatch distribution analysis found that the Chinese longsnout catfish fitted a smooth unimodal distribution, which suggested that this species underwent population expansion following bottlenecks and/or they originated from a small number of founding individuals. The time that the total population of Chinese longsnout catfish in the Yangtze River expanded was estimated 169,000–337,000 years before present. The analysis of molecular variance (AMOVA) and phylogenetic reconstructions did not detect significant geographic structure between different river sections, especially between above and below the Gezhouba Dam and the Three Gorges Dam, which suggested that these recently developed dams might have not significantly resulted in population genetic differentiation in the Chinese longsnout catfish.     

Rapid detection and monitoring therapeutic efficacy of Mycobacterium tuberculosis complex using a novel real-time assay

We combined real-time RT-PCR and real-time PCR (R/P) assays using a hydrolysis probe to detect Mycobacterium tuberculosis complex (MTBC)-specific 16S rRNA and its rRNA gene (rDNA). The assay was applied to 28 nonrespiratory and 207 respiratory specimens from 218 patients. Total nucleic acids (including RNA and DNA) were extracted from samples, and results were considered positive if the repeat RT-PCR threshold cycle was < or =35 and the ratio of real-time RT-PCR and real-time PCR load was > or =1.51. The results were compared with those from existing methods, including smear, culture, and real-time PCR. Following resolution of the discrepant results between R/P assay and culture, the overall sensitivity, specificity, positive predictive values (PPV), and negative predictive values (NPV) of all samples (including nonrespiratory and respiratory specimens) were 98.2%, 97.2%, 91.7%, and 99.4%, respectively, for R/P assay, and 83.9%, 89.9%, 72.3%, and 94.7%, respectively, for real-time PCR. Furthermore, the R/P assay of four patient samples showed a higher ratio before treatment than after several days of treatment. We conclude that the R/P assay is a rapid and accurate method for direct detection of MTBC, which can distinguish viable and nonviable MTBC, and thus may guide patient therapy and public health decisions.     

Linear bactenecin analogs with cell selectivity and anti‐endotoxic activity

Bactenecin (Bac) is a 12‐residue disulfide‐linked antimicrobial peptide isolated from the granules of bovine neutrophils. In this study, to develop novel linear Bac analogs with cell selectivity and anti‐endotoxic activity, we designed and synthesized a series of linear Bac analogs with amino acid substitution in Cys^3,11 and/or Val^6,7 of Bac. Among Bac analogs, some analogs (Bac‐W, Bac‐KW, Bac‐L, Bac‐KL, Bac‐LW, and Bac‐KLW) with higher hydrophobicity showed the amalgamated property of cell selectivity and anti‐endotoxic activity. Furthermore, Bac‐W, Bac‐KW, Bac‐LW, and Bac‐KLW showed serum stability comparable with that of disulfide‐bonded Bac. Therefore, these Bac analogs (Bac‐W, Bac‐KW, Bac‐LW, and Bac‐KLW) can serve as promising antibiotics for the development of therapeutic agents for treatment against endotoxic shock and bacterial infection. In addition, our results suggest that a little increase in hydrophobicity may be responsible for the decreased cell selectivity of the multiple Arg‐containing peptides (Bac‐W, Bac‐L, and Bac‐LW) over the multiple Lys‐containing peptides (Bac‐KW, Bac‐KL, and Bac‐KLW). Copyright © 2012 European Peptide Society and John Wiley & Sons, Ltd.     

Lentivirus-mediated overexpression of microRNA-199a inhibits cell proliferation of human hepatocellular carcinoma

microRNA-199a (miR-199a) is a highly conserved miRNA, always deregulated in numerous human tumors. The results of microarray analysis indicated that miR-199a was frequently downregulated in hepatocellular carcinoma (HCC). The expression levels of miR-199a in 11 pairs of matched HCC neoplastic and adjacent non-neoplastic tissues, 5 HCC cell lines and liver cell line L02 were examined by quantitative real-time PCR analysis. We found miR-199a was significantly down-regulated in HCC tissues when compared with pair-matched adjacent non-tumor tissues. We also found the expression level of miR-199a was also substantially decreased in several human HCC cell lines including SMMC-7721, BEL-7402, BEL-7701, MHCC97H, and HepG2. To investigate the role of miR-199a in tumorigenesis, we developed a lentiviral vector for the expression of pre-miR-199a (Lenti-miR-199a). Lenti-miR-199a inhibited HCC cell proliferation in vitro and in vivo. Compared to parental cells or cells transfected with a control vector, the overexpression of microRNA-199a in the HCC cell lines HepG2 stably was showed to reduce cell proliferation in vitro and in vivo. Luciferase reporter assay revealed the regulation of miR-199a on 3’-UTR of HIF-1α. Further investigation confirmed that miR-199a significantly reduced the endogenous protein level of HIF-1α in hypoxia. MiR-199a inhibits cell proliferation in vitro and in vivo partly through down-regulation of HIF-1α in human HCC. Thus, these studies provide an important new insight into the pathogenesis of human HCC and it may open a new perspective for the development of effective gene therapy for human HCC.     

Application of ICHD-II Criteria in a Headache Clinic of China

Background

China has the huge map and the largest population in the world. Previous studies on the prevalence and classification of headaches were conducted based on the general population, however, similar studies among the Chinese outpatient population are scarce. This study aimed to analyze the characteristics of 1843 headache patients enrolled in a North China headache clinic of the General Hospital for Chinese People''s Liberation Army from October 2011 to May 2012, with the International Classification of Headache Disorders, 2nd Edition (ICHD-II).

Methods and Results

Personal interviews were carried out and a detailed questionnaire was used to collect medical records including age, sex and headache characteristics. Patients came from 28 regions of China with the median age of 40.9 (9–80) years and the female/male ratio of 1.67/1. The primary headaches (78.4%) were classified as the following: migraine (39.1%), tension-type headache (32.5%), trigeminal autonomic cephalalgias (5.3%) and other primary headache (1.5%). Among the rest patients, 12.9% were secondary headaches, 5.9% were cranial neuralgias and 2.5% were unspecified or not elsewhere classified. Fourteen point nine percent (275/1843) were given an additional diagnosis of chronic daily headache, including medication-overuse headache (MOH, 49.5%), chronic tension-type headache (CTTH, 32.7%) and chronic migraine (CM, 13.5%). The visual analogue scale (VAS) score of TTH with MOH was significantly higher than that of CTTH (6.8±2.0 vs 5.6±2.0, P<0.001). The similar result was also observed in VAS score between migraine with MOH and CM (8.0±1.5 vs 7.0±1.5, P = 0.004). The peak age at onset of TTH for male and female were both in the 3^rd decade of life. However, the age distribution at onset of migraine shows an obvious sex difference, i.e. the 2^nd decade for females and the 1^st decade for males.

Conclusions/Significance

This study revealed the characteristics of the headache clinic outpatients in a tertiary hospital of North China that migraine is the most common diagnosis. Furthermore, most headaches in this patient population can be classified using ICHD-II criteria.     

刈割对冬小麦再生积温需求及其籽粒产量和品质的影响

对黄土高原塬区冬小麦‘陇育216’于分蘖期、拔节期及孕穗期进行刈割处理,以不刈割为对照,测定冬小麦再生生长发育的积温需求及籽粒产量及其品质,探究刈割利用时间对冬小麦再生生长积温需求及产量构成的影响。结果表明:(1)分蘖中期(6个分蘖)前刈割利用,小麦再生各阶段的有效积温需求较对照无显著差异,在收获小麦青干草0.9～1.5t/hm2的同时,能保证籽粒、秸秆产量及其品质较对照均无显著下降;分蘖期后期(9个分蘖)及其后刈割利用,拔节至开花及成熟期的有效积温需求显著减少,尽管较分蘖期可多收获60%的青干草,但籽粒、秸秆产量较对照均显著降低。(2)通径分析发现,刈割主要通过降低再生植株高度及减少单位面积穗数而导致冬小麦籽粒减产。研究表明,为维持冬小麦再生生长节律、籽粒产量及品质形成的稳定,冬小麦刈割利用的时期应不迟于分蘖中期(6个分蘖)。     

马铃薯杂种F1的SSR鉴定

为选育抗黑痣病、高产优质的马铃薯新品种,选用引进品种‘大西洋’分别与‘陇薯6号’、‘陇薯7号’杂交,获得了杂种F1代,利用SSR标记技术对‘大西洋’与‘陇薯6号’的42个杂种F1、‘大西洋’与‘陇薯7号’的9个杂种F1单株进行了鉴定。从59对SSR引物中筛选出2对在亲本间存在差异、扩增稳定、条带清晰的引物S184和STM1049,用于‘大西洋’ב陇薯6号’杂种F1、‘大西洋’ב陇薯7号’杂种F1及其亲本的基因组DNA扩增。SSR带型分析显示,杂种F1的SSR带型呈双亲互补型、缺失型、父本型和母本型4类,依据带型特征鉴定出供试的51个马铃薯杂种F1单株均为真杂种,表明SSR分子标记技术用于马铃薯杂种真实性鉴定是可行的。该研究可为进一步开展马铃薯杂交后代目标性状优异株系选育提供依据。     

干旱对东北春玉米生长发育和产量的影响

选取玉米品种丹玉39为供试材料,利用大型农田水分控制试验场,采用大田池栽方式,在玉米三叶-拔节期、拔节-吐丝期、吐丝-乳熟期分别开展中度干旱胁迫及复水控制对比试验,分析3个关键生育时期干旱胁迫对春玉米生长发育和产量的影响.结果表明：与水分适宜对照（CK）相比,三叶-拔节期遭受干旱胁迫后,全生育期推迟13 d,至拔节普遍期,株高偏低29.8%,叶面积偏小41.2%,复水后,株高和产量得到较大程度恢复,果穗性状和最终产量差异不大;拔节-吐丝期遭受干旱胁迫后,全生育期缩短7 d,至吐丝普遍期,株高偏低18.6%,叶面积偏小14.1%,果穗长、穗粒数、果穗干质量、穗粒质量分别下降6.9%、19.1%、28.1%和29.4%,空秆率增加13.3%;吐丝-乳熟期遭受干旱胁迫后,全生育期缩短15 d,生长至乳熟普遍期,株高偏低2.3%,叶面积偏小37.3%,果穗长、穗粒数、果穗干质量、穗粒质量分别下降9.2%、24.1%、30.8%和27.9%,空秆率增加24.5%.拔节-吐丝期、吐丝-乳熟期干旱胁迫处理并复水后,玉米株高恢复不明显,产量降幅显著.     

Excitation of Broadband Surface Plasmons with Dye Molecules

Rhodamine B and Rhodamine 6G molecules were doped in polymethyl methacrylate solution. Then a silver film on the glass substrate was spin coated with the mixed solution to get a multilayer film. Under the irradiation of a 532-nm green laser, broadband surface plasmons (SPs) on the silver film were generated due to the coupling between the broadband fluorescence and the SP modes allowed in the multilayer film. From the back focal plane image of a leakage radiation microscopy, propagation constants of SP waves at different wavelengths were derived. Numerical calculations were also carried out and were consistent with the experimental results.     

中国跃蛃属(石蛃目,石蛃科)一新种记述

记述采自江苏南京跃蛃属1新种,老山跃蛃Pedetontinus laoshanensis sp.nov.,通过扩增其线粒体CO Ⅰ基因,与中国已知跃蛹属其它物种进行遗传距离比较,并构建系统发生树,发现其与天目跃蛹P.tianmuensis和武当跃蛹较为接近,这也更加支持了基于形态证据的系统发生关系.并提供了跃蛃属已知19种的检索表.老山跃蛹,新种Pedetontinus laoshanensis sp.nov.(图1～17)体长7.0～9.0mm,复眼长/宽为0.99 ～1.00,中连线/长为0.50 ～0.55,复眼近中连线具浅色白斑,阳基侧突为1+6型,阳茎基节/端节为2.4,阳茎和阳基侧突位于第Ⅸ肢基片的1/2,产卵管初级型,其长略超第Ⅸ腹节的刺突端刺.前产卵管,分49 ～ 50节,后产卵管,分47 ～ 50节.该物种CO Ⅰ基因信息见GenBank No.EU699175～ EU 699177.新种与泰山跃蛹P.songi、天目跃蛃P.tianmuensis和武当跃蛃P.wudangensis相似,但复眼中连线/长、阳茎基节/端节、阳茎和阳基侧突位置、产卵管分节具明显区别.基于CO Ⅰ基因序列构建BI、MP和NJ系统发生树均有效证明老山跃蛃P.laoshanensis为单系群.基于K2p模型,新种与中国跃蛹属其它物种的遗传距离比较,与天目跃蛃P.tianmuensis遗传距离最小9.7％,与栾川跃蛃P.luanchuanensis 遗传距离最大12.1％.结合形态和分子数据证明该物种的有效性.正模♂,江苏南京老山(32°07′N,118°36′E;海拔145m),2004-08-01,李鹏、张加勇采,编号ZJNUSB050.词源:新种种名源自采集地地名.