Distinct genomic traits of acral and mucosal melanomas revealed by targeted mutational profiling

The incidence of melanoma is rising globally including China. Comparing to Caucasians, the incidence of non‐cutaneous melanomas is significantly higher in Chinese. Herein, we performed genomic profiling of 89 Chinese surgically resected primary melanomas, including acral (n = 54), cutaneous (n = 22), and mucosal (n = 13), by hybrid capture‐based next‐generation sequencing. We show that mucosal melanomas tended to harbor more pathogenic mutations than other types of melanoma, though the biological significance of this finding remains uncertain. Chromosomal arm‐level alterations including 6q, 9p, and 10p/q loss were highly recurrent in all subtypes, but mucosal melanoma was significantly associated with increased genomic instability. Importantly, 7p gain significantly correlated with unfavorable clinical outcomes in non‐cutaneous melanomas, representing an intriguing prognostic biomarker of those subtypes. Furthermore, focal amplification of 4q12 (KIT, KDR, and PDGFRα) and RAD51 deletion were more abundant in mucosal melanoma, while NOTCH2 amplification was enriched in acral melanoma. Additionally, cutaneous melanomas had higher mutation load than acral melanomas, while mucosal melanomas did not differ from other subtypes in mutation burden. Together, our data revealed important features of acral and mucosal melanomas in Chinese including distinctive driver mutation pattern and increased genomic instability. These findings highlight the possibilities of combination therapies in the clinical management of melanoma.     

Mild manifestations of COVID-19 in healthcare workers

Medical staff treating Coronavirus Disease 2019 (COVID-19) patients are at high risk for exposure to Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), and many have been infected, which may cause panic among medical workers, their relatives, health professionals, and government leaders. We report the epidemiologic and clinical characteristics of healthcare workers and that the majority of infected medical staff had milder symptoms/conditions with a better prognosis than admitted patients. Timely improvement to medical staff’s working conditions such as allowing adequate rest and providing sufficient medical protection is extremely important.     

ATP binding cassette transporters ABCG1 and ABCG16 affect reproductive development via auxin signalling in Arabidopsis

Angiosperm reproductive development is a complex event that includes floral organ development, male and female gametophyte formation and interaction between the male and female reproductive organs for successful fertilization. Previous studies have revealed the redundant function of ATP binding cassette subfamily G (ABCG) transporters ABCG1 and ABCG16 in pollen development, but whether they are involved in other reproductive processes is unknown. Here we show that ABCG1 and ABCG16 were not only expressed in anthers and stamen filaments but also enriched in pistil tissues, including the stigma, style, transmitting tract and ovule. We further demonstrated that pistil‐expressed ABCG1 and ABCG16 promoted rapid pollen tube growth through their effects on auxin distribution and auxin flow in the pistil. Moreover, disrupted auxin homeostasis in stamen filaments was associated with defective filament elongation. Our work reveals the key functions of ABCG1 and ABCG16 in reproductive development and provides clues for identifying ABCG1 and ABCG16 substrates in Arabidopsis.     

小脑症蛋白ASPM和钙调蛋白的复合物的纯化和表征

常染色体隐性小脑症(Autosomal recessive primary microcephaly, MCPH)是一种与大脑缩小和智力缺陷有关的神经发育障碍。 ASPM(abnormal spindle-like microcephaly-associated)是最常见的MCPH的致病基因,但其潜在机制尚不清楚。我们发现钙调蛋白(calmodulin, CaM)通过与ASPM的IQ区域相互作用而对ASPM的功能有重要的调控作用。我们纯化了ASPM IQ区域和CaM的复合物,并通过分子排阻色谱结合多角度静态光散射（SEC-MALS）和圆二光谱（CD）实验发现了ASPM和apo_CaM的结合比例为1：8。有趣的是,在Ca2+存在时,ASPM的IQ区域与Ca2+_CaM的结合比例变为了1：7。此外,通过比较不同条件下（Ca2+存在与否）的CD光谱,ASPM-CaM复合物显示出Ca2+依赖性的热稳定性变化。综上所述,我们的研究揭示了Ca2+诱导的ASPM-CaM相互作用的调节机制。     

马铃薯StMYB44基因对蔗糖的响应

MYB转录因子存在于所有真核生物中,是最具代表的转录因子家族之一,广泛参与植物发育、苯丙烷代谢、生物与非生物胁迫响应、激素响应以及细胞形态建成等过程。该研究从马铃薯品种‘青薯9号’中克隆得到StMYB44基因(GenBank登录号XM_006367359.2),该基因CDS长为963 bp,编码320个氨基酸,含有2个SANT结构域。实时荧光定量PCR结果显示,StMYB44基因在花中表达最高,在匍匐茎中表达最低;且StMYB44基因在无蔗糖处理下表达上调,在高浓度蔗糖处理下(6%、9%)表达下调。构建表达载体并进行遗传转化烟草发现,StMYB44基因突变体在无蔗糖条件下的长势明显好于野生型,而在高蔗糖浓度下(6%、9%)的长势弱于野生型,且蔗糖浓度越高,差异越大。研究表明,蔗糖浓度能够调节StMYB44基因的表达,推测StMYB44基因可能在植物响应蔗糖中起重要作用。     

坡向和坡位对四川夹金山灌丛群落结构与物种多样性特征的影响

研究不同坡向、坡位夹金山灌丛群落结构和物种多样性特征。结果表明: 在 24 个样地中,共有维管植物 186 种,隶属于 50 科 127 属。其中,灌木层有 32 种,隶属于 14 科 22 属,阴坡下坡位物种数最多;草本层有 154 种,隶属于 43 科 109 属,阴坡物种数最少。灌木层的平均高度表现为阳坡>半阳坡>阴坡,平均密度则相反;草本层平均高度表现为阴坡>半阳坡>阳坡,平均密度无显著变化。坡位仅对阳坡草本层平均高度有显著影响,灌木层物种多样性在阴坡较高,草本层物种多样性在阳坡下坡位和阴坡中坡位较高。坡向对灌木层和草本层 Shannon多样性指数、Simpson优势度指数、物种丰富度指数、Pielou均匀度指数影响显著(除草本层 Simpson 指数),坡位对灌木层和草本层物种多样性指数均无显著影响,坡向和坡位的交互作用对草本层物种多样性的影响大于灌木层。冗余分析(RDA)表明,物种多样性不仅与坡向正弦值、坡向余弦值相关,也与群落结构特征相关性较大。     

江西双季稻氮素监测诊断模型的建立与应用

建立基于光谱仪的江西双季稻氮素监测诊断模型,可指导氮肥精确施用,达到双季稻丰产、提质、增效的目的。本研究开展了不同早、晚稻品种与氮素水平的小区试验,采用GreenSeeker光谱仪和作物生长监测诊断仪(CGMD)于分蘖期和拔节期测定了早、晚稻冠层光谱植被指数和植株氮积累量,建立了双季稻植株氮积累量光谱监测模型,并采用独立的田间试验数据对模型进行检验。利用双季稻丰产栽培经验及建立的氮素光谱诊断模型,对双季稻分蘖肥和穗肥施氮量进行定量推荐。结果表明: 双季稻氮肥施用关键期(分蘖期和拔节期)基于两种光谱仪的光谱植被指数与植株氮积累量均呈显著正相关,分蘖期和拔节期的模型预测效果比生长前期模型好。基于GreenSeeker光谱仪的归一化差值植被指数(NDVI_(780,660))的指数方程可较好地预测植株氮积累量,模型决定系数(R²)为0.92～0.94,模型检验的均方根误差(RMSE)、相对均方根误差(RRMSE)和相关系数(r)分别为3.09～5.96 kg·hm^-2、5.8%～18.5%和0.92～0.98;基于CGMD光谱仪的差值植被指数(DVI_(810,720))的线性方程可较好地预测植株氮积累量,R²为0.90～0.93,模型检验的RMSE、RRMSE和r分别为3.71～6.33 kg·hm^-2、11.7%～14.3%和0.93～0.96。基于CGMD光谱仪的模型推荐的施氮量高于基于GreenSeeker光谱仪的模型推荐的施氮量;模型生成的精确施氮方案较传统农户方案减少施氮量5.5 kg·hm^-2,氮肥农学利用率提高0.8%,纯收益提高128元·hm^-2。用双季稻氮素光谱诊断方法指导施肥能在增产的同时,降低成本,增加纯收益,对科学指导双季稻生产具有重要意义。     

干旱胁迫下喷施外源植物激素对甘薯生理特性和产量的影响

为探讨不同时期干旱胁迫下喷施外源植物激素对甘薯生理特性和产量的影响,明确喷施外源植物激素的最佳时期,在人工控水条件下研究了移栽后20(前期)、60(中期)和100 d(后期)干旱胁迫下喷施6-苄氨基嘌呤(6-BA)、α-萘乙酸(NAA)和脱落酸(ABA)对甘薯内源激素含量、光合荧光特性和产量的影响。结果表明: 与喷清水相比,喷施外源植物激素均能显著提高甘薯产量,以6-BA增幅最大,其次是NAA和ABA;前期喷施效果好于中期和后期。不同时期干旱胁迫下,喷施外源植物激素可显著提高甘薯叶片的光合和叶绿素荧光参数,缓解因干旱引起的玉米素核糖核苷(ZR)和生长素(IAA)含量下降的现象。逐步回归分析表明,内源激素和光合特性是影响甘薯产量的关键指标。通径分析表明,前期干旱胁迫下喷施外源植物激素主要通过影响净光合速率(P_n)、IAA、ZR、最大光化学效率和光化学性能指数来影响甘薯产量。生长前期喷施6-BA可调控甘薯内源激素含量,提高光合特性,有效缓解干旱造成的产量损失。