系统发育谱构建方法研究

随着后基因组时代的到来,系统发育谱方法作为一种非同源性的功能注释方法,已经被成功的应用到基因组功能预测、蛋白质相互作用预测等一些重要领域的研究中去。本文阐述了系统发育谱法的基本原理,详细地介绍了现有的几种系统发育谱的构建方法,并提出了利用ortholog来构建基因的系统发育谱的思想。     

Fast classification and compositional analysis of cornstover fractions using Fourier transform near-infrared techniques

The objectives of this research were to determine the variation of chemical composition across botanical fractions of cornstover, and to probe the potential of Fourier transform near-infrared (FT-NIR) techniques in qualitatively classifying separated cornstover fractions and in quantitatively analyzing chemical compositions of cornstover by developing calibration models to predict chemical compositions of cornstover based on FT-NIR spectra. Large variations of cornstover chemical composition for wide calibration ranges, which is required by a reliable calibration model, were achieved by manually separating the cornstover samples into six botanical fractions, and their chemical compositions were determined by conventional wet chemical analyses, which proved that chemical composition varies significantly among different botanical fractions of cornstover. Different botanic fractions, having total saccharide content in descending order, are husk, sheath, pith, rind, leaf, and node. Based on FT-NIR spectra acquired on the biomass, classification by Soft Independent Modeling of Class Analogy (SIMCA) was employed to conduct qualitative classification of cornstover fractions, and partial least square (PLS) regression was used for quantitative chemical composition analysis. SIMCA was successfully demonstrated in classifying botanical fractions of cornstover. The developed PLS model yielded root mean square error of prediction (RMSEP %w/w) of 0.92, 1.03, 0.17, 0.27, 0.21, 1.12, and 0.57 for glucan, xylan, galactan, arabinan, mannan, lignin, and ash, respectively. The results showed the potential of FT-NIR techniques in combination with multivariate analysis to be utilized by biomass feedstock suppliers, bioethanol manufacturers, and bio-power producers in order to better manage bioenergy feedstocks and enhance bioconversion.     

转基因抗虫棉对棉铃虫及其内寄生蜂的双重效应

以含1%转基因（Cry1A+CpTI）抗虫棉“中抗310”棉叶粉的人工饲料为基础,建立一套抗虫棉 棉铃虫Helicoverpa armigera 棉铃虫幼虫内寄生蜂中红侧沟茧蜂Microplitis mediator和棉铃虫齿唇姬蜂Campoletis chlorideae的三级营养关系的研究系统,研究了转基因抗虫棉对棉铃虫及内寄生蜂的双重效应,分析比较了6种状态的棉铃虫生长发育动态,以及寄生蜂的生长状况。结果表明,无论是否被寄生,抗虫棉对棉铃虫生长发育的抑制作用都非常显著;寄生取食抗虫棉饲料的棉铃虫的寄生蜂,其出茧率和茧重都显著下降,对于中红侧沟茧蜂,出茧率和茧重分别下降了26.1%和1.0 mg;对于棉铃虫齿唇姬蜂,分别下降了17.9%和5.1 mg。解剖寄主发现,两种寄生蜂在取食抗虫棉饲料的寄主体内发育缓慢并出现部分畸形幼蜂。棉铃虫幼虫血淋巴总蛋白含量和血淋巴蛋白SDS-PAGE电泳分析表明,取食抗虫棉饲料后,棉铃虫血淋巴总蛋白含量低于相应的对照,推测寄主血淋巴蛋白含量降低是导致寄生蜂生长缓慢、发育不正常的一个重要原因。     

白背飞虱对水稻抗虫品种N22的适应性研究

在室内连续用感虫品种TN1和抗虫品种N22单管饲养白背飞虱(Sogatella furcifera)种群,研究它对抗虫水稻品种的适应性及其体内保护酶的变化,结果表明,白背飞虱在感虫品种TN1和抗虫品种N22品种上饲养1至2代,其卵历期、若虫期和全世代历期均无明显差异,从感虫品种TN1转移到抗虫品种N22上饲养1代,白背飞虱的若虫存活率、雌成虫寿命、体重、蜜露量、产卵量和内禀增长率等均低于在抗虫品种上连续饲养2代,而后者又低于在感虫品种上饲养的指标,白背飞虱在抗虫品种上连续饲养2代后,体内保护酶中超氧化物岐化酶(SOD)和过氧化氢酶(CAT)活性逐渐接近于感虫品种上连续饲养的结果,说明白背飞虱从感虫品种转到抗虫品种在开始时并不适应,经过连续繁殖多代后白背飞虱逐渐适应,最后导致抗虫品种的抗性丧失。     

大鼠脂肪间充质干细胞诱导为类肝细胞及其细胞片的制备

成体多能干细胞,如来自骨髓和脂肪组织的间充质干细胞等具有多向分化的潜能。虽然自体干细胞移植已经发展成为器官移植的有效代替疗法之一,但是由于移植位点细胞的流失和分化条件的限制等问题使得这种疗法的效率大大降低。本研究目的是将由脂肪干细胞分化而来的类肝细胞制备成具有稳定细胞性状的可移植的肝细胞片。首先在体外分离扩增脂肪干细胞,并通过控制严格地分化条件获得类肝细胞。然后将此细胞接种到聚N-异丙基丙烯酰胺(PNIPAAm)结合的细胞培养皿表面,通过调节培养温度到20oC,使细胞成片脱离培养皿形成细胞片。对细胞片进行了常规HE染色和免疫组化观察,结果显示:这类细胞片中平均含有2～3层细胞,并且保持了细胞外基质的完整。同传统的胰酶消化收集移植用细胞相比,细胞片方法极大地减少了对移植用细胞的细胞膜和细胞外基质的损伤,这将大大促进细胞片和原位组织的相互作用,增加细胞利用效率,从而有望提高治疗效果。     

不同稻作方式对稻田杂草群落的影响

运用半试验与调查相结合的方法,以贵州省从江县传统农业区的糯稻和杂交稻为例,研究了在水稻单作（R）、稻-鱼（R-F）和稻-鱼-鸭（R-F-D）3种不同稻作方式下稻田杂草群落的特征.结果表明：糯稻在3种稻作方式下的抑制杂草能力均优于杂交稻;R-F-D显著降低了田间杂草的发生密度,对鸭舌草、节节菜等的抑制效果达到100%,总体抑制杂草效果显著优于其他稻作方式,杂草的物种丰富度及Shannon多样性指数显著降低,Pielou均匀度指数提高,表明群落物种组成发生了很大的改变,降低了原来优势杂草的发生, 是一种较好的可达到抑制杂草效果的稻作方式.     

Involvement of Matrix Metalloproteinases on the Inhibition of Cells Invasion and Migration by Emodin in Human Neuroblastoma SH-SY5Y Cells

Emodin (1,3,8-trihydroxy-6-methylanthaquinone), an active component present in the root and rhizome of Rheum palmatum L. (Polygonaceae) has anti-bacterial, anti-tumor, diuretic and vasorelaxant effects. However, its mechanism of action on the cell migration and invasion of human neuroblastoma cancer SH-SY5Y cells is not fully understood. In this study, firstly, the effects of emodin on the percentage of viable cells were examined by using MTT assay and it was found that emodin induced dose-and time-dependent inhibition in human neuroblastoma SH-SY5Y cells. Second, the effects of emodin on the migration and invasion of SH-SY5Y cells were examined by using wound assay and matrigel counting and the results showed that emodin suppressed the migration and invasion of SH-SY5Y cells. Third, we examined the effect of emodin on the levels of associated proteins by using Western blotting and the results indicated that emodin inhibited the levels of GRB2, RhoA, HIF-1α, VEGF, FAK, iNOS, COX2, p-p38, p-c-jun, MMP2, MMP9 and MMP7 but promoted the levels of PKC, PI3K, MEKK3 and NF-κB p65 that led to the inhibition of migration and invasion of SH-SY5Y cells in vitro.     

Inhibition of Filamin-A Reduces Cancer Metastatic Potential

Filamin-A cross-links actin filaments into dynamic orthogonal networks, and interacts with an array of proteins of diverse cellular functions. Because several filamin-A interaction partners are implicated in signaling of cell mobility regulation, we tested the hypothesis that filamin-A plays a role in cancer metastasis. Using four pairs of filamin-A proficient and deficient isogenic cell lines, we found that filamin-A deficiency in cancer cells significantly reduces their migration and invasion. Using a xenograft tumor model with subcutaneous and intracardiac injections of tumor cells, we found that the filamin-A deficiency causes significant reduction of lung, splenic and systemic metastasis in nude mice. We evaluated the expression of filamin-A in breast cancer tissues by immunohistochemical staining, and found that low levels of filamin-A expression in cancer cells of the tumor tissues are associated with a better distant metastasis-free survival than those with normal levels of filamin-A. These data not only validate filamin-A as a prognostic marker for cancer metastasis, but also suggest that inhibition of filamin-A in cancer cells may reduce metastasis and that filamin-A can be used as a therapeutic target for filamin-A positive cancer.