SAMPLE SIZE ESTIMATION FOR GENE ACTION ANALYSIS BY USING ORTHOGONAL CONTRAST

IIntroductionTheuseofrestrlctlonfragmentlengthpolymorphism（RFLP）markershasgreatlyslmpllfledthegeneticanalysisofquantitativetraits,providingareliableandextensiveframeworkofquantltatlvemarkerstowhichquantltatlyetyaitIOCI（QTL）clnhilinked［‘］．TodetectthelinkagebetwwenRFLPmarkersandPhenotyPlcvariationsoh－served,generallinearmodelofanalysisofvariance（ANOVA）hasbeenextensivelyusedL‘zJ．ByusingF、populations,thecompletegeneticInformation,thatIs,thethreegenotypesofageneticfact…     

毛萼田菁和其它茎瘤固氮植物(综述)

近来,豆科植物茎瘤固氮研究取得很大进展,这种双重固氮能力在农业上具有很大应用潜力。茎瘤固氮植物主要有三个属,即田菁属（Ｓｅｓｂａｎｉａ）、合萌属（Ａｅｓｃｈｙｎｏｎｍｅｎｅ）和假含羞草属（Ｎｅｐｔｕｎｉａ）。本文论述它们的生长特性、茎瘤的形成、固氮及在农业上的应用。     

Association mapping of leaf traits, flowering time, and phytate content in Brassica rapa.

Association mapping was used to investigate the genetic basis of variation within Brassica rapa, which is an important vegetable and oil crop. We analyzed the variation of phytate and phosphate levels in seeds and leaves and additional developmental and morphological traits in a set of diverse B. rapa accessions and tested association of these traits with AFLP markers. The analysis of population structure revealed four subgroups in the population. Trait values differed between these subgroups, thus defining associations between population structure and trait values, even for traits such as phytate and phosphate levels. Marker-trait associations were investigated both with and without taking population structure into account. One hundred and seventy markers were found to be associated with the observed traits without correction for population structure. Association analysis with correction for population structure led to the identification of 27 markers, 6 of which had known map positions; 3 of these were confirmed in additional QTL mapping studies.     

Next-generation bis-locked nucleic acids with stacking linker and 2′-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes

Targeting and invading double-stranded DNA with synthetic oligonucleotides under physiological conditions remain a challenge. Bis-locked nucleic acids (bisLNAs) are clamp-forming oligonucleotides able to invade into supercoiled DNA via combined Hoogsteen and Watson–Crick binding. To improve the bisLNA design, we investigated its mechanism of binding. Our results suggest that bisLNAs bind via Hoogsteen-arm first, followed by Watson–Crick arm invasion, initiated at the tail. Based on this proposed hybridization mechanism, we designed next-generation bisLNAs with a novel linker able to stack to adjacent nucleobases, a new strategy previously not applied for any type of clamp-constructs. Although the Hoogsteen-arm limits the invasion, upon incorporation of the stacking linker, bisLNA invasion is significantly more efficient than for non-clamp, or nucleotide-linker containing LNA-constructs. Further improvements were obtained by substituting LNA with 2′-glycylamino-LNA, contributing a positive charge. For regular bisLNAs a 14-nt tail significantly enhances invasion. However, when two stacking linkers were incorporated, tail-less bisLNAs were able to efficiently invade. Finally, successful targeting of plasmids inside bacteria clearly demonstrates that strand invasion can take place in a biologically relevant context.     

Characterization and primary functional analysis of a bamboo NAC gene targeted by miR164b

Key message

PeSNAC1 , a stress-related NAC1 from Phyllostachys edulis , was characterized. Ectopic expression in Arabidopsis indicated that PeSNAC1 together with ped -miR164b participated in the regulation of organ boundaries and stress tolerance.

Abstract

NAC (NAM, ATAF1/2 and CUC2) participates in many different processes regulating plant growth, development, and stress response. A total of 125 NAC genes have been predicted in moso bamboo (Phyllostachys edulis), but their roles are poorly understood. PeSNAC1 targeted by ped-miR164b was focused for further study. The cleavage of PeSNAC1 mRNA guided by ped-miR164b was validated using RLM-5′ RACE. Tissue-specific expression analysis demonstrated that ped-miR164b had a declining trend from root, sheath, leaf, to that of stem, which was opposite to that of PeSNAC1. Transgenic Arabidopsis plants overexpressing either PeSNAC1 (OX-PeSNAC1) or, ped-miR164b (OX-ped-miR164b) driven by the CaMV35S promoter were generated. OX-ped-miR164b plants showed similar phenotype of cuc2 mutants whose growth was seriously suppressed. Compared with Col-0, sense OX-PeSNAC1 plants grew rapidly and flowered earlier, whereas antisense plants grew slowly and exhibited delayed flowering. Sense OX-PeSNAC1 plants had the greatest number of lateral roots, while antisense OX-PeSNAC1 and OX-ped-miR164b plants had fewer lateral roots than Col-0. Under NaCl and PEG6000 stresses, survival rates were higher and F _v/F _m values declined more slowly in sense OX-PeSNAC1 plants than in Col-0, with lower survival rates and a more rapid decrease in F _v/F _m values conversely observed in antisense OX-PeSNAC1 and OX-ped-miR164b plants. These findings indicated that ped-miR164b-targeted PeSNAC1 may play key roles in plant development and tolerance to salinity and drought stresses.

     

Biodiversity of arbuscular mycorrhizal fungi in the drawdown zone of the Three Gorges Reservoir under different fertilization histories

Impoundment of the Three Gorges Reservoir (TGR) has dramatically influenced the riparian environment and shaped a new drawdown zone, which has experienced long-term winter conditions and short periods of summer flooding. The community structure and diversity of arbuscular mycorrhizal (AM) fungi (AMF) were investigated in three areas with different fertilization histories [Area A (5 years of fertilization), Area B (3 years of fertilization) and Area C (no fertilization)] in the drawdown zone of the TGR. Altogether, 50 AMF species were identified; the genera Acaulospora, Funneliformis and Glomus were predominant. The AM fungal community differed among areas A, B and C. A higher isolation frequency and relative abundance of Acaulospora, Ambispora, Entrophospora and Paraglomus were observed in areas A and B; however, Claroideoglomus, Diversispora, Sclerocystis and Septoglomus were more abundant in Area C. The highest spore density occurred in Area C, and was slightly lower in Area A and lowest in Area B. Conversely, species richness and diversity indices (Shannon–Wiener and evenness indices) were the highest in Area A, followed by areas C and B. Based on nonmetric multidimensional scaling analyses, the distribution of AMF was influenced by plant host, fertilization practice and environmental factors. Among them, the soil physicochemical properties were the main drivers affecting AMF, in which three edaphic attributes (carbon/nitrogen ratio, available phosphorus and potassium content) were significantly correlated (P < 0.001) with the AM fungal community composition in the three areas of the drawdown zone of the TGR.     

Structural Correlation of the Neck Coil with the Coiled-coil (CC1)-Forkhead-associated (FHA) Tandem for Active Kinesin-3 KIF13A

Processive kinesin motors often contain a coiled-coil neck that controls the directionality and processivity. However, the neck coil (NC) of kinesin-3 is too short to form a stable coiled-coil dimer. Here, we found that the coiled-coil (CC1)-forkhead-associated (FHA) tandem (that is connected to NC by Pro-390) of kinesin-3 KIF13A assembles as an extended dimer. With the removal of Pro-390, the NC-CC1 tandem of KIF13A unexpectedly forms a continuous coiled-coil dimer that can be well aligned into the CC1-FHA dimer. The reverse introduction of Pro-390 breaks the NC-CC1 coiled-coil dimer but provides the intrinsic flexibility to couple NC with the CC1-FHA tandem. Mutations of either NC, CC1, or the FHA domain all significantly impaired the motor activity. Thus, the three elements within the NC-CC1-FHA tandem of KIF13A are structurally interrelated to form a stable dimer for activating the motor. This work also provides the first direct structural evidence to support the formation of a coiled-coil neck by the short characteristic neck domain of kinesin-3.     

Comparison of ultrastructural and physiological changes of potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) plantlets subjected to salt and modeling drought stresses

Salinity and drought are two severe abiotic stresses that affect plant growth and decrease food production worldwide. Compared to the field plants, test-tube plantlets could be more direct and fast to investigate the mechanism of stress adaptation. In the present study, the ultrastructural and physiological differences of potato (Solanum tuberosum L. c.v. “Longshu No. 3”) plantlets in response to the gradient saline (0, 25, 50, 100, and 200 mM NaCl) and the modeling drought stresses with polyethylene glycol (PEG) at the concentrations of 0, 2, 4, 6, and 8 % were analyzed. The results show that the severe salt (200 mM NaCl) and the modeling drought stresses (8 % PEG) inhibited the plantlet growth. There are considerable differences in their ultrastructural alteration under salt and modeling drought adaptation: PEG caused the increase in the number of stacked chloroplast, plastoglobuli, and starch; NaCl induced the decrease in the number of chloroplast and plastoglobuli. Moreover, plantlet has higher free proline content, less malondialdehyde (MDA) content, and higher activities of catalase (CAT) and superoxide dismutase (SOD) under the gradient NaCl treatments than the gradient PEG treatments. The results of this study will provide theoretical and practical insights into characterizing the ultrastructural and physiological differences of plants adapting to various stressful environments.