长江平原区乡村景观的结构、管理及其对土壤氮磷的影响

通过实地研究主要位于宜兴市域的区域乡村景观代表性样方,评价并阐明了人口密集的长江平原区乡村景观的结构、管理与土壤全氮、全磷密度和储量的关系.景观绘图是基于1m分辨率的IKONOS影像并采用生态立地分类及绘图标准,通过直接解译和实地检验对均质景观缀块进行分类和绘图;依据区域权重分层取样方法,在生态立地缀块中随机设定取样点进行土壤或底泥取样;通过自助法对12个样方重取样,用区域多变量最优化方法计算样方的区域权重,并结合不确定性分析模型评价区域土地利用/覆被、土壤全氮和全磷储量.结果表明:在85.24×103km2的长江平原区乡村景观面积范围内,0～30cm土壤全氮、全磷储量分别为29.87Tg N和 19.79Tg P.最大的5种土地利用/覆被的类型为水田、水产养殖、非渗漏性建筑用地、旱地1年生作物和闲置水域,占区域总面积的82.9%;其土壤全氮、全磷储量分别占区域总量的82.6%和80.8%.其中平原稻田面积为38.93×103km2,占总面积的45.5%;其0～30cm土壤全氮、全磷储量分别高达15.26Tg N和9.13Tg P,分别占总储量的51%和45%.揭示了人口密集的乡村景观中土地利用/覆被方式对区域土壤全氮、全磷的影响模式.这种在小尺度下对土地管理调查,土壤全氮、全磷及其它生态特征研究方法的精确度明显优于传统的基于30～1000m分辨率遥感影像的土地覆被研究.     

DLGCN:基于图卷积网络的药物-lncRNA[]关联预测

为实现高通量识别新的药物-长链非编码RNA(Long non-coding RNA, lncRNA)关联,本文提出了一种基于图卷积网络模型来识别潜在药物-lncRNA关联的方法DLGCN(Drug-LncRNA graph convolution network)。首先,基于药物的结构信息和lncRNA的序列信息分别构建了药物-药物和lncRNA-lncRNA相似性网络,并整合实验证实的药物-lncRNA关联构建了药物-lncRNA异质性网络。然后,将注意力机制和图卷积运算应用于该网络中,学习药物和lncRNA的低维特征,基于整合的低维特征预测新的药物-lncRNA关联。通过效能评估,DLGCN的受试者工作特性曲线下面积(Area under receiver operating characteristic, AUROC)达到0.843 1,优于经典的机器学习方法和常见的深度学习方法。此外,DLGCN预测到姜黄素能够调控lncRNA MALAT1的表达,已被最近的研究证实。DLGCN能够有效预测药物-lncRNA关联,为肿瘤治疗新靶点的识别和抗癌药物的筛选提供了重要参考。     

Human C1orf27 protein interacts with α2A-adrenergic receptor and regulates its anterograde transport

The molecular mechanisms underlying the anterograde surface transport of G protein–coupled receptors (GPCRs) after their synthesis in the endoplasmic reticulum (ER) are not well defined. In C. elegans, odorant response abnormal 4 has been implicated in the delivery of olfactory GPCRs to the cilia of chemosensory neurons. However, the function and regulation of its human homolog, C1orf27, in GPCR transport or in general membrane trafficking remain unknown. Here, we demonstrate that siRNA-mediated knockdown of C1orf27 markedly impedes the ER-to-Golgi export kinetics of newly synthesized α_2A-adrenergic receptor (α_2A-AR), a prototypic GPCR, with the half-time being prolonged by more than 65%, in mammalian cells in retention using the selective hooks assays. Using modified bioluminescence resonance energy transfer assays and ELISAs, we also show that C1orf27 knockdown significantly inhibits the surface transport of α_2A-AR. Similarly, C1orf27 knockout by CRISPR-Cas9 markedly suppresses the ER–Golgi-surface transport of α_2A-AR. In addition, we demonstrate that C1orf27 depletion attenuates the export of β₂-AR and dopamine D2 receptor but not of epidermal growth factor receptor. We further show that C1orf27 physically associates with α_2A-AR, specifically via its third intracellular loop and C terminus. Taken together, these data demonstrate an important role of C1orf27 in the trafficking of nascent GPCRs from the ER to the cell surface through the Golgi and provide novel insights into the regulation of the biosynthesis and anterograde transport of the GPCR family members.     

马鞍列岛褐菖鲉Sebasticus marmoratus栖息地适宜性评价

为了评估趋礁鱼类在岛礁海域的生境适宜度,选取马鞍列岛的褐菖鲉(Sebasticus marmoratus)为指示物种,以2009年获取的水深、盐度、叶绿素a、浊度和底质数据作为褐菖鲉春、冬季栖息地指示因子,建立栖息地适宜度曲线,并计算各站点的栖息地适宜性指数(HSI)。结果显示:1)绿华、花鸟、嵊山沿岸站点HSI普遍较低,枸杞岛、三横山、东库山沿岸站点褐菖鲉HSI相对较高,其中最大值1.0出现在枸杞岛沿岸的站点;2)春季褐菖鲉幼鱼的适宜水深在6 m左右,成鱼适宜在8—12 m的水深处生存;冬季褐菖鲉对8—12 m的水深适宜性良好;3)春季所有褐菖鲉的适宜盐度为30PSU,冬季幼鱼的适宜盐度为27—31PSU,成鱼的适宜盐度为27PSU、31PSU;4)随着叶绿素a和浊度值的增大,褐菖鲉适宜性逐渐降低。底质类型为岩时最适合褐菖鲉生存。5)相关分析显示,褐菖鲉丰度与底质类型相关性最大,而与叶绿素a、浊度呈显著负相关。研究结果表明,初级生产力和浑浊程度越高对褐菖鲉丰度抑制越明显。底质类型是褐菖鲉丰度分布的重要影响因子,其中分布有较多大型海藻的岩礁生境是其最适宜的栖息地。利用2010年春、冬季环境调查和渔获数据进行HSI模型验证,资源丰度随HSI值升高而增加,因此构建的模型可用于趋礁鱼类在岛礁海域的栖息地适宜性分析。     

Design,synthesis, and biological evaluation of novel carbazole derivatives as potent DNMT1 inhibitors with reasonable PK properties

The DNA methyltransferases (DNMTs) were found in mammals to maintain DNA methylation. Among them, DNMT1 was the first identified, and it is an attractive target for tumour chemotherapy. DC_05 and DC_517 have been reported in our previous work, which is non-nucleoside DNMT1 inhibitor with low micromolar IC₅₀ values and significant selectivity towards other S-adenosyl-_L-methionine (SAM)-dependent protein methyltransferases. In this study, through a process of similarity-based analog searching, a series of DNMT1 inhibitors were designed, synthesized, and evaluated as anticancer agents. SAR studies were conducted based on enzymatic assays. And most of the compounds showed strong inhibitory activity on human DNMT1, especially WK-23 displayed a good inhibitory effect on human DNMT1 with an IC₅₀ value of 5.0 µM. Importantly, the pharmacokinetic (PK) profile of WK-23 was obtained with quite satisfying oral bioavailability and elimination half-life. Taken together, WK-23 is worth developing as DNMT1-selective therapy for the treatment of malignant tumour.     

Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling

Background  

The potyviruses sugarcane mosaic virus (SCMV) and maize dwarf mosaic virus (MDMV) are major pathogens of maize worldwide. Two loci, Scmv1 and Scmv2, have ealier been shown to confer complete resistance to SCMV. Custom-made microarrays containing previously identified SCMV resistance candidate genes and resistance gene analogs were utilised to investigate and validate gene expression and expression patterns of isogenic lines under pathogen infection in order to obtain information about the molecular mechanisms involved in maize-potyvirus interactions.     

中国顶丝藻科（Acrochaetiaceae）新记录I

中国顶丝藻科新记录６种。密集旋体藻Ａｕｄｏｕｉｎｅｌｌｅｄｅｎｓａ,亮管旋体藻Ａ．ｈｙａｌｏｓｉｐｈｏｎｉａｅ,小旋体藻Ａ．ｐａｒｖｕｌａ,羽状旋体藻Ａ．ｐｌｕｍｏｓａ,顶生旋体藻Ａ．ｔｅｒｍｉｎａｌｉｓ,图氏旋体藻Ａ．ｔｈｕｒｅｔｉｉ。     

安徽马尾松人工林营养元素分配格局的研究

本文系统地研究了马尾松人工林营养元素的分配格局。结果表明马尾松不同器官营养元素含量是叶>枝皮>干皮>枝木>干木;同化器官——针叶中营养元素含量规律为N>K>Ca>Mg>P,非同化器官为Ca>N>K>Mg>P;不同器官营养元素的贮量为干木>干皮>叶>枝木>枝皮,同化器官对不同营养元素的贮量呈N>K>Ca>Mg>P,非同化器官为Ca>N>K>Mg>P;不同立地条件下,马尾松林生产1t干物质所贮存的营养元素不同,立地条件愈好,营养元素效率愈高,贮存愈少;母岩、土层厚度和养分总量是影响马尾松林地上各器官,特别是针叶营养元素含量的重要因子,土壤N、P含量越高,马尾松人工林生物量越大。     

高浓度Cd,Pb污染水域中的微生物生态

用选择性培养基和滤纸片法研究了Cd、Pb污染水域中的微生物生态分布、对Cd、Pb的抗性及富集力。结果表明,污水中微生物量的变化与Cd、Pb浓度不相关。抗性微生物生物量受环境温度影响较大。微生物对Cd、Pb的抗性是霉菌>酵母和细菌,Pb>Cd。霉菌最高抗Cd、Pb浓度可达2×10~4mg·L~(-1)。酵母和细菌最高抗Cd浓度为5000mg·L~(-1)、Pb浓度为1×10~4mg·L~(-1),抗性微生物对Cd、Pb的富集力与其抗性及Cd、Pb的毒性密切相关。含Cd、Pb污水中的优势菌有欧文氏菌、产碱杆菌、节细菌、假丝酵母、曲霉和枝孢霉。     

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

Background

Cotton fibers (produced by Gossypium species) are the premier natural fibers for textile production. The two tetraploid species, G. barbadense (Gb) and G. hirsutum (Gh), differ significantly in their fiber properties, the former having much longer, finer and stronger fibers that are highly prized. A better understanding of the genetics and underlying biological causes of these differences will aid further improvement of cotton quality through breeding and biotechnology. We evaluated an inter-specific Gh × Gb recombinant inbred line (RIL) population for fiber characteristics in 11 independent experiments under field and glasshouse conditions. Sites were located on 4 continents and 5 countries and some locations were analyzed over multiple years.

Results

The RIL population displayed a large variability for all major fiber traits. QTL analyses were performed on a per-site basis by composite interval mapping. Among the 651 putative QTLs (LOD > 2), 167 had a LOD exceeding permutation based thresholds. Coincidence in QTL location across data sets was assessed for the fiber trait categories strength, elongation, length, length uniformity, fineness/maturity, and color. A meta-analysis of more than a thousand putative QTLs was conducted with MetaQTL software to integrate QTL data from the RIL and 3 backcross populations (from the same parents) and to compare them with the literature. Although the global level of congruence across experiments and populations was generally moderate, the QTL clustering was possible for 30 trait x chromosome combinations (5 traits in 19 different chromosomes) where an effective co-localization of unidirectional (similar sign of additivity) QTLs from at least 5 different data sets was observed. Most consistent meta-clusters were identified for fiber color on chromosomes c6, c8 and c25, fineness on c15, and fiber length on c3.

Conclusions

Meta-analysis provided a reliable means of integrating phenotypic and genetic mapping data across multiple populations and environments for complex fiber traits. The consistent chromosomal regions contributing to fiber quality traits constitute good candidates for the further dissection of the genetic and genomic factors underlying important fiber characteristics, and for marker-assisted selection.